Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_1998

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAc3H11_1997 and Ac3H11_1998 are separated by 32 nucleotidesAc3H11_1998 and Ac3H11_1999 are separated by 84 nucleotidesAc3H11_1999 and Ac3H11_2000 overlap by 12 nucleotides Ac3H11_1997 - Methyl-accepting chemotaxis protein I (serine chemoreceptor protein), at 213,541 to 215,325 _1997 Ac3H11_1998 - Positive regulator of CheA protein activity (CheW), at 215,358 to 215,885 _1998 Ac3H11_1999 - hypothetical protein, at 215,970 to 216,140 _1999 Ac3H11_2000 - LSU m5C1962 methyltransferase RlmI, at 216,129 to 217,322 _2000 Position (kb) 215 216Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 214.820 kb on + strand, within Ac3H11_1997at 214.850 kb on + strand, within Ac3H11_1997at 214.850 kb on + strand, within Ac3H11_1997at 214.850 kb on + strand, within Ac3H11_1997at 214.850 kb on + strand, within Ac3H11_1997at 214.851 kb on - strand, within Ac3H11_1997at 214.851 kb on - strand, within Ac3H11_1997at 214.887 kb on + strand, within Ac3H11_1997at 214.952 kb on + strand, within Ac3H11_1997at 214.952 kb on + strand, within Ac3H11_1997at 214.952 kb on + strand, within Ac3H11_1997at 214.952 kb on + strand, within Ac3H11_1997at 214.952 kb on + strand, within Ac3H11_1997at 214.952 kb on + strand, within Ac3H11_1997at 214.953 kb on - strand, within Ac3H11_1997at 214.953 kb on - strand, within Ac3H11_1997at 214.953 kb on - strand, within Ac3H11_1997at 214.953 kb on - strand, within Ac3H11_1997at 214.953 kb on - strand, within Ac3H11_1997at 214.953 kb on - strand, within Ac3H11_1997at 215.378 kb on + strandat 215.378 kb on + strandat 215.378 kb on + strandat 215.378 kb on + strandat 215.378 kb on + strandat 215.378 kb on + strandat 215.378 kb on + strandat 215.378 kb on + strandat 215.379 kb on - strandat 215.574 kb on + strand, within Ac3H11_1998at 215.574 kb on + strand, within Ac3H11_1998at 215.574 kb on + strand, within Ac3H11_1998at 215.574 kb on + strand, within Ac3H11_1998at 215.574 kb on + strandat 215.574 kb on + strand, within Ac3H11_1998at 215.574 kb on + strand, within Ac3H11_1998at 215.574 kb on + strand, within Ac3H11_1998at 215.574 kb on + strand, within Ac3H11_1998at 215.574 kb on + strand, within Ac3H11_1998at 215.574 kb on + strand, within Ac3H11_1998at 215.575 kb on - strand, within Ac3H11_1998at 215.575 kb on - strand, within Ac3H11_1998at 215.575 kb on - strand, within Ac3H11_1998at 215.575 kb on - strand, within Ac3H11_1998at 215.575 kb on - strand, within Ac3H11_1998at 215.575 kb on - strand, within Ac3H11_1998at 215.575 kb on - strand, within Ac3H11_1998at 215.576 kb on + strand, within Ac3H11_1998at 215.576 kb on + strand, within Ac3H11_1998at 215.576 kb on + strand, within Ac3H11_1998at 215.576 kb on + strand, within Ac3H11_1998at 215.576 kb on + strand, within Ac3H11_1998at 215.576 kb on + strand, within Ac3H11_1998at 215.576 kb on + strand, within Ac3H11_1998at 215.576 kb on + strand, within Ac3H11_1998at 215.576 kb on + strand, within Ac3H11_1998at 215.576 kb on + strand, within Ac3H11_1998at 215.576 kb on + strand, within Ac3H11_1998at 215.576 kb on + strand, within Ac3H11_1998at 215.576 kb on + strand, within Ac3H11_1998at 215.576 kb on + strand, within Ac3H11_1998at 215.577 kb on - strand, within Ac3H11_1998at 215.577 kb on - strand, within Ac3H11_1998at 215.577 kb on - strand, within Ac3H11_1998at 215.577 kb on - strand, within Ac3H11_1998at 215.577 kb on - strand, within Ac3H11_1998at 215.577 kb on - strand, within Ac3H11_1998at 215.577 kb on - strand, within Ac3H11_1998at 215.577 kb on - strand, within Ac3H11_1998at 215.577 kb on - strand, within Ac3H11_1998at 215.608 kb on + strand, within Ac3H11_1998at 215.608 kb on + strand, within Ac3H11_1998at 215.608 kb on + strand, within Ac3H11_1998at 215.608 kb on + strand, within Ac3H11_1998at 215.608 kb on + strand, within Ac3H11_1998at 215.608 kb on + strand, within Ac3H11_1998at 215.608 kb on + strand, within Ac3H11_1998at 215.608 kb on + strand, within Ac3H11_1998at 215.609 kb on - strand, within Ac3H11_1998at 215.609 kb on - strand, within Ac3H11_1998at 215.609 kb on - strand, within Ac3H11_1998at 215.609 kb on - strand, within Ac3H11_1998at 215.609 kb on - strand, within Ac3H11_1998at 215.609 kb on - strand, within Ac3H11_1998at 215.768 kb on - strand, within Ac3H11_1998at 215.925 kb on - strandat 216.316 kb on + strand, within Ac3H11_2000at 216.531 kb on + strand, within Ac3H11_2000at 216.531 kb on + strand, within Ac3H11_2000at 216.531 kb on + strand, within Ac3H11_2000at 216.531 kb on + strand, within Ac3H11_2000at 216.531 kb on + strand, within Ac3H11_2000at 216.531 kb on + strand, within Ac3H11_2000at 216.532 kb on - strand, within Ac3H11_2000at 216.532 kb on - strand, within Ac3H11_2000at 216.532 kb on - strand, within Ac3H11_2000at 216.532 kb on - strand, within Ac3H11_2000at 216.532 kb on - strand, within Ac3H11_2000at 216.532 kb on - strand, within Ac3H11_2000at 216.606 kb on - strand, within Ac3H11_2000at 216.711 kb on + strand, within Ac3H11_2000at 216.712 kb on - strand, within Ac3H11_2000at 216.712 kb on - strand, within Ac3H11_2000at 216.712 kb on - strand, within Ac3H11_2000at 216.712 kb on - strand, within Ac3H11_2000at 216.712 kb on - strand, within Ac3H11_2000at 216.750 kb on + strand, within Ac3H11_2000at 216.751 kb on - strand, within Ac3H11_2000at 216.751 kb on - strand, within Ac3H11_2000at 216.795 kb on + strand, within Ac3H11_2000at 216.796 kb on - strand, within Ac3H11_2000at 216.796 kb on - strand, within Ac3H11_2000

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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214,820 + Ac3H11_1997 0.72 +0.4
214,850 + Ac3H11_1997 0.73 +0.2
214,850 + Ac3H11_1997 0.73 +2.1
214,850 + Ac3H11_1997 0.73 -1.4
214,850 + Ac3H11_1997 0.73 -1.1
214,851 - Ac3H11_1997 0.73 +0.1
214,851 - Ac3H11_1997 0.73 -1.3
214,887 + Ac3H11_1997 0.75 -1.0
214,952 + Ac3H11_1997 0.79 +1.1
214,952 + Ac3H11_1997 0.79 -0.3
214,952 + Ac3H11_1997 0.79 -2.3
214,952 + Ac3H11_1997 0.79 -2.1
214,952 + Ac3H11_1997 0.79 +1.0
214,952 + Ac3H11_1997 0.79 -1.7
214,953 - Ac3H11_1997 0.79 -2.2
214,953 - Ac3H11_1997 0.79 -0.7
214,953 - Ac3H11_1997 0.79 -2.8
214,953 - Ac3H11_1997 0.79 +0.7
214,953 - Ac3H11_1997 0.79 -0.5
214,953 - Ac3H11_1997 0.79 +1.5
215,378 + -1.9
215,378 + -2.9
215,378 + +2.4
215,378 + -0.2
215,378 + -0.2
215,378 + +0.9
215,378 + -0.5
215,378 + -1.6
215,379 - -1.4
215,574 + Ac3H11_1998 0.41 +0.4
215,574 + Ac3H11_1998 0.41 -0.6
215,574 + Ac3H11_1998 0.41 -1.4
215,574 + Ac3H11_1998 0.41 +1.4
215,574 + +0.6
215,574 + Ac3H11_1998 0.41 +0.5
215,574 + Ac3H11_1998 0.41 -0.7
215,574 + Ac3H11_1998 0.41 -2.0
215,574 + Ac3H11_1998 0.41 +1.3
215,574 + Ac3H11_1998 0.41 +1.5
215,574 + Ac3H11_1998 0.41 +1.3
215,575 - Ac3H11_1998 0.41 -0.2
215,575 - Ac3H11_1998 0.41 +1.6
215,575 - Ac3H11_1998 0.41 -1.4
215,575 - Ac3H11_1998 0.41 -0.2
215,575 - Ac3H11_1998 0.41 -0.1
215,575 - Ac3H11_1998 0.41 +0.3
215,575 - Ac3H11_1998 0.41 +0.9
215,576 + Ac3H11_1998 0.41 +1.1
215,576 + Ac3H11_1998 0.41 -0.4
215,576 + Ac3H11_1998 0.41 -0.4
215,576 + Ac3H11_1998 0.41 -2.2
215,576 + Ac3H11_1998 0.41 -0.1
215,576 + Ac3H11_1998 0.41 -0.9
215,576 + Ac3H11_1998 0.41 +0.3
215,576 + Ac3H11_1998 0.41 +0.9
215,576 + Ac3H11_1998 0.41 +1.1
215,576 + Ac3H11_1998 0.41 +0.4
215,576 + Ac3H11_1998 0.41 -0.4
215,576 + Ac3H11_1998 0.41 -1.4
215,576 + Ac3H11_1998 0.41 -0.1
215,576 + Ac3H11_1998 0.41 -1.7
215,577 - Ac3H11_1998 0.41 -2.2
215,577 - Ac3H11_1998 0.41 +0.4
215,577 - Ac3H11_1998 0.41 +1.4
215,577 - Ac3H11_1998 0.41 +1.1
215,577 - Ac3H11_1998 0.41 -1.9
215,577 - Ac3H11_1998 0.41 +0.1
215,577 - Ac3H11_1998 0.41 -0.2
215,577 - Ac3H11_1998 0.41 +0.6
215,577 - Ac3H11_1998 0.41 +0.2
215,608 + Ac3H11_1998 0.47 -1.0
215,608 + Ac3H11_1998 0.47 -0.4
215,608 + Ac3H11_1998 0.47 +0.2
215,608 + Ac3H11_1998 0.47 +2.3
215,608 + Ac3H11_1998 0.47 +2.2
215,608 + Ac3H11_1998 0.47 -2.1
215,608 + Ac3H11_1998 0.47 +0.9
215,608 + Ac3H11_1998 0.47 +1.2
215,609 - Ac3H11_1998 0.48 +1.3
215,609 - Ac3H11_1998 0.48 -2.0
215,609 - Ac3H11_1998 0.48 -0.3
215,609 - Ac3H11_1998 0.48 -1.7
215,609 - Ac3H11_1998 0.48 -0.4
215,609 - Ac3H11_1998 0.48 +0.6
215,768 - Ac3H11_1998 0.78 -1.3
215,925 - -0.6
216,316 + Ac3H11_2000 0.16 -2.3
216,531 + Ac3H11_2000 0.34 -1.2
216,531 + Ac3H11_2000 0.34 +0.2
216,531 + Ac3H11_2000 0.34 +1.1
216,531 + Ac3H11_2000 0.34 +1.4
216,531 + Ac3H11_2000 0.34 +0.7
216,531 + Ac3H11_2000 0.34 +0.7
216,532 - Ac3H11_2000 0.34 +1.3
216,532 - Ac3H11_2000 0.34 -0.3
216,532 - Ac3H11_2000 0.34 -2.6
216,532 - Ac3H11_2000 0.34 +0.6
216,532 - Ac3H11_2000 0.34 +1.4
216,532 - Ac3H11_2000 0.34 -0.3
216,606 - Ac3H11_2000 0.40 -0.6
216,711 + Ac3H11_2000 0.49 -0.6
216,712 - Ac3H11_2000 0.49 +0.4
216,712 - Ac3H11_2000 0.49 +0.3
216,712 - Ac3H11_2000 0.49 -0.2
216,712 - Ac3H11_2000 0.49 -0.0
216,712 - Ac3H11_2000 0.49 -0.9
216,750 + Ac3H11_2000 0.52 +0.7
216,751 - Ac3H11_2000 0.52 -0.6
216,751 - Ac3H11_2000 0.52 -0.2
216,795 + Ac3H11_2000 0.56 +0.4
216,796 - Ac3H11_2000 0.56 +0.1
216,796 - Ac3H11_2000 0.56 +1.7

Or see this region's nucleotide sequence