Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_1990

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAc3H11_1989 and Ac3H11_1990 are separated by 150 nucleotidesAc3H11_1990 and Ac3H11_1991 are separated by 89 nucleotidesAc3H11_1991 and Ac3H11_1992 are separated by 119 nucleotides Ac3H11_1989 - Putative drug efflux protein, at 205,729 to 206,931 _1989 Ac3H11_1990 - Transcriptional regulator, LysR family, at 207,082 to 207,957 _1990 Ac3H11_1991 - hypothetical protein, at 208,047 to 208,244 _1991 Ac3H11_1992 - Glutathione S-transferase (EC 2.5.1.18), at 208,364 to 209,068 _1992 Position (kb) 207 208Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 206.198 kb on + strand, within Ac3H11_1989at 206.198 kb on + strand, within Ac3H11_1989at 206.199 kb on - strand, within Ac3H11_1989at 206.199 kb on - strand, within Ac3H11_1989at 206.263 kb on + strand, within Ac3H11_1989at 206.264 kb on - strand, within Ac3H11_1989at 206.264 kb on - strand, within Ac3H11_1989at 206.264 kb on - strand, within Ac3H11_1989at 206.264 kb on - strand, within Ac3H11_1989at 206.315 kb on + strand, within Ac3H11_1989at 206.315 kb on + strand, within Ac3H11_1989at 206.316 kb on - strand, within Ac3H11_1989at 206.792 kb on + strand, within Ac3H11_1989at 206.792 kb on + strand, within Ac3H11_1989at 206.792 kb on + strand, within Ac3H11_1989at 206.793 kb on - strand, within Ac3H11_1989at 206.793 kb on - strand, within Ac3H11_1989at 206.793 kb on - strand, within Ac3H11_1989at 207.017 kb on - strandat 207.424 kb on + strand, within Ac3H11_1990at 207.425 kb on - strand, within Ac3H11_1990at 207.463 kb on + strand, within Ac3H11_1990at 207.463 kb on + strand, within Ac3H11_1990at 207.464 kb on - strand, within Ac3H11_1990at 207.464 kb on - strand, within Ac3H11_1990at 207.464 kb on - strand, within Ac3H11_1990at 207.464 kb on - strand, within Ac3H11_1990at 207.583 kb on + strand, within Ac3H11_1990at 207.584 kb on - strand, within Ac3H11_1990at 207.883 kb on + strandat 207.883 kb on + strandat 207.884 kb on - strandat 207.884 kb on - strandat 207.884 kb on - strandat 207.884 kb on - strandat 207.884 kb on - strandat 207.884 kb on - strandat 207.886 kb on + strandat 208.279 kb on + strandat 208.279 kb on + strandat 208.280 kb on - strandat 208.280 kb on - strandat 208.280 kb on - strandat 208.280 kb on - strandat 208.280 kb on - strandat 208.280 kb on - strandat 208.479 kb on + strand, within Ac3H11_1992at 208.479 kb on + strand, within Ac3H11_1992at 208.479 kb on + strand, within Ac3H11_1992at 208.533 kb on + strand, within Ac3H11_1992at 208.533 kb on + strand, within Ac3H11_1992at 208.533 kb on + strand, within Ac3H11_1992at 208.533 kb on + strand, within Ac3H11_1992at 208.534 kb on - strand, within Ac3H11_1992at 208.534 kb on - strand, within Ac3H11_1992at 208.534 kb on - strand, within Ac3H11_1992at 208.534 kb on - strand, within Ac3H11_1992at 208.534 kb on - strand, within Ac3H11_1992at 208.534 kb on - strand, within Ac3H11_1992at 208.581 kb on - strand, within Ac3H11_1992at 208.611 kb on + strand, within Ac3H11_1992at 208.612 kb on - strand, within Ac3H11_1992at 208.612 kb on - strand, within Ac3H11_1992at 208.614 kb on - strand, within Ac3H11_1992at 208.782 kb on + strand, within Ac3H11_1992at 208.783 kb on - strand, within Ac3H11_1992at 208.783 kb on - strand, within Ac3H11_1992at 208.783 kb on - strand, within Ac3H11_1992at 208.935 kb on + strand, within Ac3H11_1992at 208.935 kb on + strand, within Ac3H11_1992at 208.935 kb on + strand, within Ac3H11_1992at 208.935 kb on + strand, within Ac3H11_1992at 208.936 kb on - strand, within Ac3H11_1992at 208.936 kb on - strand, within Ac3H11_1992at 208.936 kb on - strand, within Ac3H11_1992

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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206,198 + Ac3H11_1989 0.39 +0.8
206,198 + Ac3H11_1989 0.39 -1.2
206,199 - Ac3H11_1989 0.39 +0.9
206,199 - Ac3H11_1989 0.39 +0.3
206,263 + Ac3H11_1989 0.44 -0.2
206,264 - Ac3H11_1989 0.44 +0.4
206,264 - Ac3H11_1989 0.44 +0.8
206,264 - Ac3H11_1989 0.44 +2.3
206,264 - Ac3H11_1989 0.44 +0.3
206,315 + Ac3H11_1989 0.49 +0.3
206,315 + Ac3H11_1989 0.49 +0.2
206,316 - Ac3H11_1989 0.49 -0.7
206,792 + Ac3H11_1989 0.88 +1.1
206,792 + Ac3H11_1989 0.88 +0.7
206,792 + Ac3H11_1989 0.88 -0.4
206,793 - Ac3H11_1989 0.88 -2.5
206,793 - Ac3H11_1989 0.88 -0.5
206,793 - Ac3H11_1989 0.88 -3.8
207,017 - +1.4
207,424 + Ac3H11_1990 0.39 +0.2
207,425 - Ac3H11_1990 0.39 -2.8
207,463 + Ac3H11_1990 0.43 +0.9
207,463 + Ac3H11_1990 0.43 +0.7
207,464 - Ac3H11_1990 0.44 +0.7
207,464 - Ac3H11_1990 0.44 +0.0
207,464 - Ac3H11_1990 0.44 -1.2
207,464 - Ac3H11_1990 0.44 +1.4
207,583 + Ac3H11_1990 0.57 -4.1
207,584 - Ac3H11_1990 0.57 +1.3
207,883 + +1.0
207,883 + +0.9
207,884 - +0.2
207,884 - +0.7
207,884 - +0.9
207,884 - -1.2
207,884 - -0.0
207,884 - -0.7
207,886 + +1.2
208,279 + +1.3
208,279 + -0.9
208,280 - -0.8
208,280 - +0.2
208,280 - -0.6
208,280 - -2.2
208,280 - +2.0
208,280 - -2.6
208,479 + Ac3H11_1992 0.16 +1.5
208,479 + Ac3H11_1992 0.16 +0.3
208,479 + Ac3H11_1992 0.16 -2.6
208,533 + Ac3H11_1992 0.24 +0.4
208,533 + Ac3H11_1992 0.24 -0.6
208,533 + Ac3H11_1992 0.24 -0.5
208,533 + Ac3H11_1992 0.24 -0.7
208,534 - Ac3H11_1992 0.24 -3.6
208,534 - Ac3H11_1992 0.24 -0.5
208,534 - Ac3H11_1992 0.24 -0.7
208,534 - Ac3H11_1992 0.24 +0.5
208,534 - Ac3H11_1992 0.24 -0.3
208,534 - Ac3H11_1992 0.24 -1.2
208,581 - Ac3H11_1992 0.31 +0.5
208,611 + Ac3H11_1992 0.35 +1.1
208,612 - Ac3H11_1992 0.35 +0.6
208,612 - Ac3H11_1992 0.35 +0.1
208,614 - Ac3H11_1992 0.35 +0.3
208,782 + Ac3H11_1992 0.59 +1.7
208,783 - Ac3H11_1992 0.59 -1.6
208,783 - Ac3H11_1992 0.59 +2.2
208,783 - Ac3H11_1992 0.59 -0.4
208,935 + Ac3H11_1992 0.81 +0.9
208,935 + Ac3H11_1992 0.81 -2.2
208,935 + Ac3H11_1992 0.81 +1.1
208,935 + Ac3H11_1992 0.81 +1.6
208,936 - Ac3H11_1992 0.81 +0.5
208,936 - Ac3H11_1992 0.81 +0.1
208,936 - Ac3H11_1992 0.81 -0.1

Or see this region's nucleotide sequence