Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Ac3H11_1767 and Ac3H11_1768 are separated by 98 nucleotides Ac3H11_1768 and Ac3H11_1769 are separated by 310 nucleotides
Ac3H11_1767 - L-lactate dehydrogenase (EC 1.1.2.3), at 381,294 to 382,553
_1767
Ac3H11_1768 - LysR family transcriptional regulator y2377 (Yersinia pestis KIM), at 382,652 to 383,551
_1768
Ac3H11_1769 - Seryl-tRNA synthetase (EC 6.1.1.11), at 383,862 to 385,223
_1769
Position (kb)
382
383
384 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 381.972 kb on + strand, within Ac3H11_1767 at 381.972 kb on + strand, within Ac3H11_1767 at 381.972 kb on + strand, within Ac3H11_1767 at 381.972 kb on + strand, within Ac3H11_1767 at 381.972 kb on + strand, within Ac3H11_1767 at 381.972 kb on + strand, within Ac3H11_1767 at 381.973 kb on - strand, within Ac3H11_1767 at 381.973 kb on - strand, within Ac3H11_1767 at 382.057 kb on - strand, within Ac3H11_1767 at 382.060 kb on + strand, within Ac3H11_1767 at 382.061 kb on - strand, within Ac3H11_1767 at 382.061 kb on - strand, within Ac3H11_1767 at 382.061 kb on - strand, within Ac3H11_1767 at 382.061 kb on - strand, within Ac3H11_1767 at 382.061 kb on - strand, within Ac3H11_1767 at 382.061 kb on - strand, within Ac3H11_1767 at 382.237 kb on + strand, within Ac3H11_1767 at 382.238 kb on - strand, within Ac3H11_1767 at 382.582 kb on + strand at 382.582 kb on + strand at 382.583 kb on - strand at 382.614 kb on - strand at 382.614 kb on - strand at 382.618 kb on - strand at 383.053 kb on - strand, within Ac3H11_1768 at 383.137 kb on - strand, within Ac3H11_1768 at 383.444 kb on + strand, within Ac3H11_1768 at 383.444 kb on + strand, within Ac3H11_1768 at 383.444 kb on + strand, within Ac3H11_1768 at 383.450 kb on + strand, within Ac3H11_1768 at 383.450 kb on + strand, within Ac3H11_1768 at 383.451 kb on - strand, within Ac3H11_1768 at 383.451 kb on - strand, within Ac3H11_1768 at 383.596 kb on + strand at 383.597 kb on - strand at 383.656 kb on + strand at 383.656 kb on + strand at 383.657 kb on - strand at 383.657 kb on - strand at 383.744 kb on + strand at 383.744 kb on + strand at 383.745 kb on - strand at 383.792 kb on + strand at 383.792 kb on + strand at 383.792 kb on + strand at 383.792 kb on + strand at 383.793 kb on - strand at 383.793 kb on - strand at 383.793 kb on - strand at 383.793 kb on - strand at 383.798 kb on + strand at 383.798 kb on + strand at 383.799 kb on - strand at 383.799 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 381,972 + Ac3H11_1767 0.54 -0.1 381,972 + Ac3H11_1767 0.54 +0.9 381,972 + Ac3H11_1767 0.54 -2.1 381,972 + Ac3H11_1767 0.54 +0.3 381,972 + Ac3H11_1767 0.54 -1.8 381,972 + Ac3H11_1767 0.54 +0.1 381,973 - Ac3H11_1767 0.54 +0.4 381,973 - Ac3H11_1767 0.54 +3.0 382,057 - Ac3H11_1767 0.61 +0.9 382,060 + Ac3H11_1767 0.61 -2.1 382,061 - Ac3H11_1767 0.61 +0.7 382,061 - Ac3H11_1767 0.61 -1.2 382,061 - Ac3H11_1767 0.61 -1.2 382,061 - Ac3H11_1767 0.61 +0.6 382,061 - Ac3H11_1767 0.61 -1.4 382,061 - Ac3H11_1767 0.61 -1.3 382,237 + Ac3H11_1767 0.75 -0.5 382,238 - Ac3H11_1767 0.75 -1.8 382,582 + -1.2 382,582 + +0.5 382,583 - +1.3 382,614 - -2.2 382,614 - +0.0 382,618 - +1.8 383,053 - Ac3H11_1768 0.45 -3.5 383,137 - Ac3H11_1768 0.54 -0.2 383,444 + Ac3H11_1768 0.88 +1.1 383,444 + Ac3H11_1768 0.88 +1.7 383,444 + Ac3H11_1768 0.88 -0.0 383,450 + Ac3H11_1768 0.89 -0.7 383,450 + Ac3H11_1768 0.89 +1.6 383,451 - Ac3H11_1768 0.89 -0.8 383,451 - Ac3H11_1768 0.89 +0.3 383,596 + -0.8 383,597 - +1.8 383,656 + -2.0 383,656 + -0.3 383,657 - +0.9 383,657 - +0.2 383,744 + +1.3 383,744 + -0.3 383,745 - -3.7 383,792 + -2.1 383,792 + -1.2 383,792 + -2.2 383,792 + -0.2 383,793 - +0.2 383,793 - -1.6 383,793 - -0.7 383,793 - -1.3 383,798 + +0.2 383,798 + +0.7 383,799 - -0.0 383,799 - +0.7
Or see this region's nucleotide sequence