Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_1707

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAc3H11_1706 and Ac3H11_1707 are separated by 177 nucleotidesAc3H11_1707 and Ac3H11_1708 are separated by 19 nucleotidesAc3H11_1708 and Ac3H11_1709 are separated by 196 nucleotides Ac3H11_1706 - Fmu (Sun) /eukaryotic nucleolar NOL1/Nop2p; tRNA and rRNA cytosine-C5-methylases, at 306,986 to 308,260 _1706 Ac3H11_1707 - FIG00933533: hypothetical protein, at 308,438 to 310,291 _1707 Ac3H11_1708 - FIG00932121: hypothetical protein, at 310,311 to 310,616 _1708 Ac3H11_1709 - Phosphoribosylglycinamide formyltransferase (EC 2.1.2.2), at 310,813 to 311,400 _1709 Position (kb) 308 309 310 311Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 307.518 kb on + strand, within Ac3H11_1706at 307.519 kb on - strand, within Ac3H11_1706at 307.519 kb on - strand, within Ac3H11_1706at 307.532 kb on - strand, within Ac3H11_1706at 307.732 kb on - strand, within Ac3H11_1706at 308.019 kb on + strand, within Ac3H11_1706at 308.019 kb on + strand, within Ac3H11_1706at 308.019 kb on + strand, within Ac3H11_1706at 308.019 kb on + strand, within Ac3H11_1706at 308.020 kb on - strand, within Ac3H11_1706at 308.020 kb on - strand, within Ac3H11_1706at 308.109 kb on + strand, within Ac3H11_1706at 308.110 kb on - strand, within Ac3H11_1706at 308.110 kb on - strand, within Ac3H11_1706at 308.110 kb on - strand, within Ac3H11_1706at 308.110 kb on - strand, within Ac3H11_1706at 308.110 kb on - strand, within Ac3H11_1706at 308.110 kb on - strand, within Ac3H11_1706at 308.110 kb on - strand, within Ac3H11_1706at 308.446 kb on + strandat 308.446 kb on + strandat 308.447 kb on - strandat 308.448 kb on + strandat 308.448 kb on + strandat 308.448 kb on + strandat 308.448 kb on + strandat 308.448 kb on + strandat 308.448 kb on + strandat 308.448 kb on + strandat 308.448 kb on + strandat 308.448 kb on + strandat 308.448 kb on + strandat 308.448 kb on + strandat 308.448 kb on + strandat 308.449 kb on - strandat 308.449 kb on - strandat 308.449 kb on - strandat 308.449 kb on - strandat 308.449 kb on - strandat 308.449 kb on - strandat 308.449 kb on - strandat 308.449 kb on - strandat 308.449 kb on - strandat 308.449 kb on - strandat 308.449 kb on - strandat 308.566 kb on - strandat 308.610 kb on + strandat 308.610 kb on + strandat 308.610 kb on + strandat 308.611 kb on - strandat 308.611 kb on - strandat 308.611 kb on - strandat 308.611 kb on - strandat 308.898 kb on + strand, within Ac3H11_1707at 308.934 kb on - strand, within Ac3H11_1707at 308.934 kb on - strand, within Ac3H11_1707at 308.934 kb on - strand, within Ac3H11_1707at 309.034 kb on - strand, within Ac3H11_1707at 309.034 kb on - strand, within Ac3H11_1707at 309.588 kb on + strand, within Ac3H11_1707at 309.588 kb on + strand, within Ac3H11_1707at 309.589 kb on - strand, within Ac3H11_1707at 309.589 kb on - strand, within Ac3H11_1707at 309.639 kb on + strand, within Ac3H11_1707at 309.639 kb on + strand, within Ac3H11_1707at 309.732 kb on + strand, within Ac3H11_1707at 309.732 kb on + strand, within Ac3H11_1707at 309.733 kb on - strand, within Ac3H11_1707at 309.733 kb on - strand, within Ac3H11_1707at 309.733 kb on - strand, within Ac3H11_1707at 309.777 kb on + strand, within Ac3H11_1707at 309.778 kb on - strand, within Ac3H11_1707at 309.778 kb on - strand, within Ac3H11_1707at 310.147 kb on + strandat 310.147 kb on + strandat 310.148 kb on - strandat 310.185 kb on + strandat 310.185 kb on + strandat 310.185 kb on + strandat 310.186 kb on - strandat 310.186 kb on - strandat 310.186 kb on - strandat 310.221 kb on + strandat 310.335 kb on - strandat 310.335 kb on - strandat 310.335 kb on - strandat 310.335 kb on - strandat 310.335 kb on - strandat 310.410 kb on + strand, within Ac3H11_1708at 310.411 kb on - strand, within Ac3H11_1708at 310.419 kb on + strand, within Ac3H11_1708at 310.419 kb on + strand, within Ac3H11_1708at 310.419 kb on + strand, within Ac3H11_1708at 310.419 kb on + strand, within Ac3H11_1708at 310.419 kb on + strand, within Ac3H11_1708at 310.419 kb on + strand, within Ac3H11_1708at 310.420 kb on - strand, within Ac3H11_1708at 310.420 kb on - strand, within Ac3H11_1708at 310.420 kb on - strand, within Ac3H11_1708at 310.420 kb on - strand, within Ac3H11_1708at 310.434 kb on + strand, within Ac3H11_1708at 310.434 kb on + strand, within Ac3H11_1708at 310.434 kb on + strand, within Ac3H11_1708at 310.435 kb on - strand, within Ac3H11_1708at 310.435 kb on - strand, within Ac3H11_1708at 310.435 kb on - strand, within Ac3H11_1708at 310.435 kb on - strand, within Ac3H11_1708at 310.488 kb on + strand, within Ac3H11_1708at 310.500 kb on + strand, within Ac3H11_1708at 310.500 kb on + strand, within Ac3H11_1708at 310.500 kb on + strand, within Ac3H11_1708at 310.500 kb on + strand, within Ac3H11_1708at 310.500 kb on + strand, within Ac3H11_1708at 310.501 kb on - strand, within Ac3H11_1708at 310.501 kb on - strand, within Ac3H11_1708at 310.815 kb on - strandat 310.857 kb on - strandat 311.087 kb on + strand, within Ac3H11_1709

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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307,518 + Ac3H11_1706 0.42 +2.0
307,519 - Ac3H11_1706 0.42 -3.9
307,519 - Ac3H11_1706 0.42 +1.3
307,532 - Ac3H11_1706 0.43 +0.8
307,732 - Ac3H11_1706 0.59 -1.6
308,019 + Ac3H11_1706 0.81 -0.8
308,019 + Ac3H11_1706 0.81 -0.3
308,019 + Ac3H11_1706 0.81 -0.8
308,019 + Ac3H11_1706 0.81 -3.4
308,020 - Ac3H11_1706 0.81 -0.6
308,020 - Ac3H11_1706 0.81 +1.1
308,109 + Ac3H11_1706 0.88 +0.2
308,110 - Ac3H11_1706 0.88 +0.4
308,110 - Ac3H11_1706 0.88 +1.6
308,110 - Ac3H11_1706 0.88 -3.1
308,110 - Ac3H11_1706 0.88 +0.2
308,110 - Ac3H11_1706 0.88 -1.1
308,110 - Ac3H11_1706 0.88 +2.0
308,110 - Ac3H11_1706 0.88 -1.8
308,446 + +1.2
308,446 + -1.8
308,447 - -2.0
308,448 + +1.9
308,448 + +0.5
308,448 + -0.6
308,448 + +1.2
308,448 + +0.8
308,448 + +0.9
308,448 + -1.0
308,448 + -1.1
308,448 + -0.1
308,448 + +1.1
308,448 + -1.2
308,448 + +0.6
308,449 - +0.6
308,449 - -2.5
308,449 - -0.1
308,449 - +0.6
308,449 - -2.6
308,449 - +0.5
308,449 - -1.4
308,449 - -0.1
308,449 - -0.7
308,449 - -1.8
308,449 - +0.2
308,566 - -1.0
308,610 + +0.9
308,610 + +1.1
308,610 + +0.3
308,611 - -1.1
308,611 - -1.2
308,611 - -0.5
308,611 - +0.2
308,898 + Ac3H11_1707 0.25 -1.2
308,934 - Ac3H11_1707 0.27 +0.9
308,934 - Ac3H11_1707 0.27 +2.3
308,934 - Ac3H11_1707 0.27 +0.7
309,034 - Ac3H11_1707 0.32 +1.3
309,034 - Ac3H11_1707 0.32 +0.1
309,588 + Ac3H11_1707 0.62 -0.4
309,588 + Ac3H11_1707 0.62 +0.6
309,589 - Ac3H11_1707 0.62 +1.7
309,589 - Ac3H11_1707 0.62 -0.3
309,639 + Ac3H11_1707 0.65 -2.0
309,639 + Ac3H11_1707 0.65 -0.4
309,732 + Ac3H11_1707 0.70 +1.6
309,732 + Ac3H11_1707 0.70 +2.7
309,733 - Ac3H11_1707 0.70 +1.6
309,733 - Ac3H11_1707 0.70 +0.5
309,733 - Ac3H11_1707 0.70 +0.3
309,777 + Ac3H11_1707 0.72 -0.2
309,778 - Ac3H11_1707 0.72 -0.4
309,778 - Ac3H11_1707 0.72 +2.1
310,147 + +0.5
310,147 + +0.2
310,148 - -2.6
310,185 + -0.0
310,185 + +0.9
310,185 + +0.0
310,186 - +1.1
310,186 - -0.2
310,186 - -2.0
310,221 + +1.1
310,335 - +0.6
310,335 - -0.4
310,335 - +0.9
310,335 - +1.0
310,335 - +1.0
310,410 + Ac3H11_1708 0.32 -1.6
310,411 - Ac3H11_1708 0.33 -2.2
310,419 + Ac3H11_1708 0.35 +0.4
310,419 + Ac3H11_1708 0.35 -0.7
310,419 + Ac3H11_1708 0.35 -0.9
310,419 + Ac3H11_1708 0.35 -3.2
310,419 + Ac3H11_1708 0.35 -0.2
310,419 + Ac3H11_1708 0.35 +0.4
310,420 - Ac3H11_1708 0.36 -2.6
310,420 - Ac3H11_1708 0.36 -0.3
310,420 - Ac3H11_1708 0.36 -2.1
310,420 - Ac3H11_1708 0.36 +0.2
310,434 + Ac3H11_1708 0.40 +1.0
310,434 + Ac3H11_1708 0.40 -3.0
310,434 + Ac3H11_1708 0.40 -0.7
310,435 - Ac3H11_1708 0.41 -0.4
310,435 - Ac3H11_1708 0.41 -0.3
310,435 - Ac3H11_1708 0.41 -0.6
310,435 - Ac3H11_1708 0.41 +0.2
310,488 + Ac3H11_1708 0.58 -0.8
310,500 + Ac3H11_1708 0.62 +2.3
310,500 + Ac3H11_1708 0.62 -0.5
310,500 + Ac3H11_1708 0.62 -0.7
310,500 + Ac3H11_1708 0.62 -3.6
310,500 + Ac3H11_1708 0.62 +0.1
310,501 - Ac3H11_1708 0.62 +0.2
310,501 - Ac3H11_1708 0.62 +1.4
310,815 - -0.4
310,857 - -1.9
311,087 + Ac3H11_1709 0.47 -1.2

Or see this region's nucleotide sequence