Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Ac3H11_167 and Ac3H11_168 are separated by 115 nucleotides Ac3H11_168 and Ac3H11_169 are separated by 4 nucleotides
Ac3H11_167 - Glycine dehydrogenase [decarboxylating] (glycine cleavage system P protein) (EC 1.4.4.2), at 52,612 to 55,524
_167
Ac3H11_168 - FKBP-type peptidyl-prolyl cis-trans isomerase FkpA precursor (EC 5.2.1.8), at 55,640 to 56,044
_168
Ac3H11_169 - Albicidin resistance protein, at 56,049 to 57,101
_169
Position (kb) 55
56
57 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 54.667 kb on + strand, within Ac3H11_167 at 54.668 kb on - strand, within Ac3H11_167 at 54.668 kb on - strand, within Ac3H11_167 at 54.668 kb on - strand, within Ac3H11_167 at 54.946 kb on + strand, within Ac3H11_167 at 54.946 kb on + strand, within Ac3H11_167 at 54.946 kb on + strand, within Ac3H11_167 at 54.946 kb on + strand, within Ac3H11_167 at 54.946 kb on + strand, within Ac3H11_167 at 54.946 kb on + strand, within Ac3H11_167 at 54.947 kb on - strand, within Ac3H11_167 at 54.947 kb on - strand, within Ac3H11_167 at 54.947 kb on - strand, within Ac3H11_167 at 55.012 kb on + strand, within Ac3H11_167 at 55.012 kb on + strand, within Ac3H11_167 at 55.012 kb on + strand, within Ac3H11_167 at 55.012 kb on + strand, within Ac3H11_167 at 55.012 kb on + strand, within Ac3H11_167 at 55.013 kb on - strand, within Ac3H11_167 at 55.013 kb on - strand, within Ac3H11_167 at 55.013 kb on - strand, within Ac3H11_167 at 55.013 kb on - strand, within Ac3H11_167 at 55.013 kb on - strand, within Ac3H11_167 at 55.040 kb on - strand, within Ac3H11_167 at 55.051 kb on + strand, within Ac3H11_167 at 55.051 kb on + strand, within Ac3H11_167 at 55.052 kb on - strand, within Ac3H11_167 at 55.052 kb on - strand, within Ac3H11_167 at 55.387 kb on + strand at 55.387 kb on + strand at 55.408 kb on + strand at 55.438 kb on + strand at 55.438 kb on + strand at 55.438 kb on + strand at 55.439 kb on - strand at 55.439 kb on - strand at 55.516 kb on + strand at 55.516 kb on + strand at 55.517 kb on - strand at 55.599 kb on + strand at 55.627 kb on + strand at 55.628 kb on - strand at 55.736 kb on + strand, within Ac3H11_168 at 55.736 kb on + strand, within Ac3H11_168 at 55.737 kb on - strand, within Ac3H11_168 at 55.737 kb on - strand, within Ac3H11_168 at 55.737 kb on - strand, within Ac3H11_168 at 55.799 kb on + strand, within Ac3H11_168 at 55.799 kb on + strand, within Ac3H11_168 at 55.799 kb on + strand, within Ac3H11_168 at 55.799 kb on + strand, within Ac3H11_168 at 55.799 kb on + strand, within Ac3H11_168 at 55.799 kb on + strand, within Ac3H11_168 at 55.799 kb on + strand, within Ac3H11_168 at 55.799 kb on + strand, within Ac3H11_168 at 55.799 kb on + strand, within Ac3H11_168 at 55.800 kb on - strand, within Ac3H11_168 at 55.800 kb on - strand, within Ac3H11_168 at 55.842 kb on - strand, within Ac3H11_168 at 56.091 kb on - strand at 56.112 kb on + strand at 56.112 kb on + strand at 56.112 kb on + strand at 56.112 kb on + strand at 56.113 kb on - strand at 56.113 kb on - strand at 56.169 kb on + strand, within Ac3H11_169 at 56.169 kb on + strand, within Ac3H11_169 at 56.270 kb on - strand, within Ac3H11_169 at 56.270 kb on - strand, within Ac3H11_169 at 56.270 kb on - strand, within Ac3H11_169 at 56.270 kb on - strand, within Ac3H11_169 at 56.434 kb on - strand, within Ac3H11_169 at 56.434 kb on - strand, within Ac3H11_169 at 56.443 kb on - strand, within Ac3H11_169 at 56.583 kb on + strand, within Ac3H11_169 at 56.716 kb on - strand, within Ac3H11_169 at 57.022 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 54,667 + Ac3H11_167 0.71 +1.4 54,668 - Ac3H11_167 0.71 -0.5 54,668 - Ac3H11_167 0.71 +1.3 54,668 - Ac3H11_167 0.71 -1.8 54,946 + Ac3H11_167 0.80 -2.3 54,946 + Ac3H11_167 0.80 -2.0 54,946 + Ac3H11_167 0.80 -2.2 54,946 + Ac3H11_167 0.80 -0.0 54,946 + Ac3H11_167 0.80 -3.1 54,946 + Ac3H11_167 0.80 -1.4 54,947 - Ac3H11_167 0.80 -1.1 54,947 - Ac3H11_167 0.80 -0.6 54,947 - Ac3H11_167 0.80 +0.8 55,012 + Ac3H11_167 0.82 +0.7 55,012 + Ac3H11_167 0.82 -2.2 55,012 + Ac3H11_167 0.82 -1.3 55,012 + Ac3H11_167 0.82 -1.2 55,012 + Ac3H11_167 0.82 -0.8 55,013 - Ac3H11_167 0.82 -0.6 55,013 - Ac3H11_167 0.82 +0.9 55,013 - Ac3H11_167 0.82 -0.1 55,013 - Ac3H11_167 0.82 +0.5 55,013 - Ac3H11_167 0.82 -1.3 55,040 - Ac3H11_167 0.83 -0.5 55,051 + Ac3H11_167 0.84 -0.1 55,051 + Ac3H11_167 0.84 +0.2 55,052 - Ac3H11_167 0.84 +0.4 55,052 - Ac3H11_167 0.84 -0.0 55,387 + +0.3 55,387 + +0.9 55,408 + +0.7 55,438 + -2.2 55,438 + +0.6 55,438 + -1.1 55,439 - -0.9 55,439 - -2.0 55,516 + +0.5 55,516 + +1.7 55,517 - +1.0 55,599 + +0.9 55,627 + +0.3 55,628 - +0.2 55,736 + Ac3H11_168 0.24 +1.0 55,736 + Ac3H11_168 0.24 -0.5 55,737 - Ac3H11_168 0.24 +0.4 55,737 - Ac3H11_168 0.24 -2.3 55,737 - Ac3H11_168 0.24 -0.7 55,799 + Ac3H11_168 0.39 -2.1 55,799 + Ac3H11_168 0.39 -1.5 55,799 + Ac3H11_168 0.39 -1.1 55,799 + Ac3H11_168 0.39 -2.9 55,799 + Ac3H11_168 0.39 -1.7 55,799 + Ac3H11_168 0.39 -0.4 55,799 + Ac3H11_168 0.39 +1.5 55,799 + Ac3H11_168 0.39 -3.6 55,799 + Ac3H11_168 0.39 -0.5 55,800 - Ac3H11_168 0.40 -0.8 55,800 - Ac3H11_168 0.40 -1.0 55,842 - Ac3H11_168 0.50 +0.3 56,091 - +0.2 56,112 + -0.6 56,112 + +1.6 56,112 + -1.3 56,112 + -3.0 56,113 - +1.0 56,113 - +1.2 56,169 + Ac3H11_169 0.11 +0.3 56,169 + Ac3H11_169 0.11 -0.8 56,270 - Ac3H11_169 0.21 -0.4 56,270 - Ac3H11_169 0.21 +0.3 56,270 - Ac3H11_169 0.21 +0.6 56,270 - Ac3H11_169 0.21 +1.9 56,434 - Ac3H11_169 0.37 -0.2 56,434 - Ac3H11_169 0.37 -0.6 56,443 - Ac3H11_169 0.37 +0.8 56,583 + Ac3H11_169 0.51 -0.4 56,716 - Ac3H11_169 0.63 -1.3 57,022 - +0.3
Or see this region's nucleotide sequence