Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_167

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAc3H11_165 and Ac3H11_166 are separated by 86 nucleotidesAc3H11_166 and Ac3H11_167 are separated by 144 nucleotidesAc3H11_167 and Ac3H11_168 are separated by 115 nucleotidesAc3H11_168 and Ac3H11_169 are separated by 4 nucleotides Ac3H11_165 - Aminomethyltransferase (glycine cleavage system T protein) (EC 2.1.2.10), at 50,864 to 52,006 _165 Ac3H11_166 - Glycine cleavage system H protein, at 52,093 to 52,467 _166 Ac3H11_167 - Glycine dehydrogenase [decarboxylating] (glycine cleavage system P protein) (EC 1.4.4.2), at 52,612 to 55,524 _167 Ac3H11_168 - FKBP-type peptidyl-prolyl cis-trans isomerase FkpA precursor (EC 5.2.1.8), at 55,640 to 56,044 _168 Ac3H11_169 - Albicidin resistance protein, at 56,049 to 57,101 _169 Position (kb) 52 53 54 55 56Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 51.853 kb on - strand, within Ac3H11_165at 51.887 kb on + strand, within Ac3H11_165at 51.887 kb on + strand, within Ac3H11_165at 51.887 kb on + strand, within Ac3H11_165at 51.887 kb on + strand, within Ac3H11_165at 51.888 kb on - strand, within Ac3H11_165at 52.046 kb on + strandat 52.047 kb on - strandat 52.047 kb on - strandat 52.047 kb on - strandat 52.047 kb on - strandat 52.063 kb on + strandat 52.064 kb on - strandat 52.068 kb on - strandat 52.068 kb on - strandat 52.288 kb on + strand, within Ac3H11_166at 52.288 kb on + strand, within Ac3H11_166at 52.288 kb on + strand, within Ac3H11_166at 52.288 kb on + strand, within Ac3H11_166at 52.288 kb on + strand, within Ac3H11_166at 52.288 kb on + strand, within Ac3H11_166at 52.289 kb on - strand, within Ac3H11_166at 52.289 kb on - strand, within Ac3H11_166at 52.289 kb on - strand, within Ac3H11_166at 52.289 kb on - strand, within Ac3H11_166at 52.289 kb on - strand, within Ac3H11_166at 52.289 kb on - strand, within Ac3H11_166at 52.441 kb on + strandat 52.442 kb on - strandat 52.506 kb on + strandat 52.593 kb on - strandat 52.897 kb on + strandat 52.897 kb on + strandat 52.898 kb on - strandat 52.898 kb on - strandat 52.955 kb on - strand, within Ac3H11_167at 52.963 kb on + strand, within Ac3H11_167at 52.963 kb on + strand, within Ac3H11_167at 52.964 kb on - strand, within Ac3H11_167at 52.964 kb on - strand, within Ac3H11_167at 53.219 kb on + strand, within Ac3H11_167at 53.219 kb on + strand, within Ac3H11_167at 53.219 kb on + strand, within Ac3H11_167at 53.219 kb on + strand, within Ac3H11_167at 53.220 kb on - strand, within Ac3H11_167at 53.220 kb on - strand, within Ac3H11_167at 53.270 kb on - strand, within Ac3H11_167at 53.270 kb on - strand, within Ac3H11_167at 53.291 kb on - strand, within Ac3H11_167at 53.677 kb on + strand, within Ac3H11_167at 53.677 kb on + strand, within Ac3H11_167at 53.677 kb on + strand, within Ac3H11_167at 53.677 kb on + strand, within Ac3H11_167at 53.677 kb on + strand, within Ac3H11_167at 53.677 kb on + strand, within Ac3H11_167at 53.678 kb on - strand, within Ac3H11_167at 53.678 kb on - strand, within Ac3H11_167at 53.678 kb on - strand, within Ac3H11_167at 53.678 kb on - strand, within Ac3H11_167at 53.686 kb on + strand, within Ac3H11_167at 53.687 kb on - strand, within Ac3H11_167at 53.734 kb on + strand, within Ac3H11_167at 53.735 kb on - strand, within Ac3H11_167at 53.735 kb on - strand, within Ac3H11_167at 53.841 kb on - strand, within Ac3H11_167at 53.844 kb on + strand, within Ac3H11_167at 53.856 kb on - strand, within Ac3H11_167at 53.881 kb on + strand, within Ac3H11_167at 53.893 kb on + strand, within Ac3H11_167at 53.894 kb on - strand, within Ac3H11_167at 53.894 kb on - strand, within Ac3H11_167at 54.103 kb on + strand, within Ac3H11_167at 54.103 kb on + strand, within Ac3H11_167at 54.104 kb on - strand, within Ac3H11_167at 54.104 kb on - strand, within Ac3H11_167at 54.362 kb on - strand, within Ac3H11_167at 54.567 kb on + strand, within Ac3H11_167at 54.568 kb on - strand, within Ac3H11_167at 54.589 kb on + strand, within Ac3H11_167at 54.589 kb on + strand, within Ac3H11_167at 54.590 kb on - strand, within Ac3H11_167at 54.590 kb on - strand, within Ac3H11_167at 54.590 kb on - strand, within Ac3H11_167at 54.667 kb on + strand, within Ac3H11_167at 54.668 kb on - strand, within Ac3H11_167at 54.668 kb on - strand, within Ac3H11_167at 54.668 kb on - strand, within Ac3H11_167at 54.946 kb on + strand, within Ac3H11_167at 54.946 kb on + strand, within Ac3H11_167at 54.946 kb on + strand, within Ac3H11_167at 54.946 kb on + strand, within Ac3H11_167at 54.946 kb on + strand, within Ac3H11_167at 54.946 kb on + strand, within Ac3H11_167at 54.947 kb on - strand, within Ac3H11_167at 54.947 kb on - strand, within Ac3H11_167at 54.947 kb on - strand, within Ac3H11_167at 55.012 kb on + strand, within Ac3H11_167at 55.012 kb on + strand, within Ac3H11_167at 55.012 kb on + strand, within Ac3H11_167at 55.012 kb on + strand, within Ac3H11_167at 55.012 kb on + strand, within Ac3H11_167at 55.013 kb on - strand, within Ac3H11_167at 55.013 kb on - strand, within Ac3H11_167at 55.013 kb on - strand, within Ac3H11_167at 55.013 kb on - strand, within Ac3H11_167at 55.013 kb on - strand, within Ac3H11_167at 55.040 kb on - strand, within Ac3H11_167at 55.051 kb on + strand, within Ac3H11_167at 55.051 kb on + strand, within Ac3H11_167at 55.052 kb on - strand, within Ac3H11_167at 55.052 kb on - strand, within Ac3H11_167at 55.387 kb on + strandat 55.387 kb on + strandat 55.408 kb on + strandat 55.438 kb on + strandat 55.438 kb on + strandat 55.438 kb on + strandat 55.439 kb on - strandat 55.439 kb on - strandat 55.516 kb on + strandat 55.516 kb on + strandat 55.517 kb on - strandat 55.599 kb on + strandat 55.627 kb on + strandat 55.628 kb on - strandat 55.736 kb on + strand, within Ac3H11_168at 55.736 kb on + strand, within Ac3H11_168at 55.737 kb on - strand, within Ac3H11_168at 55.737 kb on - strand, within Ac3H11_168at 55.737 kb on - strand, within Ac3H11_168at 55.799 kb on + strand, within Ac3H11_168at 55.799 kb on + strand, within Ac3H11_168at 55.799 kb on + strand, within Ac3H11_168at 55.799 kb on + strand, within Ac3H11_168at 55.799 kb on + strand, within Ac3H11_168at 55.799 kb on + strand, within Ac3H11_168at 55.799 kb on + strand, within Ac3H11_168at 55.799 kb on + strand, within Ac3H11_168at 55.799 kb on + strand, within Ac3H11_168at 55.800 kb on - strand, within Ac3H11_168at 55.800 kb on - strand, within Ac3H11_168at 55.842 kb on - strand, within Ac3H11_168at 56.091 kb on - strandat 56.112 kb on + strandat 56.112 kb on + strandat 56.112 kb on + strandat 56.112 kb on + strandat 56.113 kb on - strandat 56.113 kb on - strandat 56.169 kb on + strand, within Ac3H11_169at 56.169 kb on + strand, within Ac3H11_169at 56.270 kb on - strand, within Ac3H11_169at 56.270 kb on - strand, within Ac3H11_169at 56.270 kb on - strand, within Ac3H11_169at 56.270 kb on - strand, within Ac3H11_169at 56.434 kb on - strand, within Ac3H11_169at 56.434 kb on - strand, within Ac3H11_169at 56.443 kb on - strand, within Ac3H11_169

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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51,853 - Ac3H11_165 0.87 +1.8
51,887 + Ac3H11_165 0.90 -1.7
51,887 + Ac3H11_165 0.90 +0.0
51,887 + Ac3H11_165 0.90 -1.4
51,887 + Ac3H11_165 0.90 -2.0
51,888 - Ac3H11_165 0.90 +0.4
52,046 + -1.0
52,047 - -0.1
52,047 - -1.4
52,047 - -1.2
52,047 - +0.7
52,063 + +0.3
52,064 - -1.6
52,068 - +1.1
52,068 - +0.1
52,288 + Ac3H11_166 0.52 +0.7
52,288 + Ac3H11_166 0.52 +1.4
52,288 + Ac3H11_166 0.52 +0.2
52,288 + Ac3H11_166 0.52 -0.1
52,288 + Ac3H11_166 0.52 -1.7
52,288 + Ac3H11_166 0.52 +1.3
52,289 - Ac3H11_166 0.52 -0.0
52,289 - Ac3H11_166 0.52 +0.3
52,289 - Ac3H11_166 0.52 -1.3
52,289 - Ac3H11_166 0.52 +1.6
52,289 - Ac3H11_166 0.52 -1.8
52,289 - Ac3H11_166 0.52 +0.6
52,441 + -0.9
52,442 - -0.6
52,506 + -2.3
52,593 - +2.5
52,897 + -1.5
52,897 + -2.2
52,898 - -3.8
52,898 - +0.8
52,955 - Ac3H11_167 0.12 +1.1
52,963 + Ac3H11_167 0.12 +0.6
52,963 + Ac3H11_167 0.12 +0.7
52,964 - Ac3H11_167 0.12 -1.5
52,964 - Ac3H11_167 0.12 -1.8
53,219 + Ac3H11_167 0.21 +1.2
53,219 + Ac3H11_167 0.21 -3.3
53,219 + Ac3H11_167 0.21 -1.5
53,219 + Ac3H11_167 0.21 +0.5
53,220 - Ac3H11_167 0.21 -1.5
53,220 - Ac3H11_167 0.21 -1.8
53,270 - Ac3H11_167 0.23 +1.5
53,270 - Ac3H11_167 0.23 -2.9
53,291 - Ac3H11_167 0.23 -4.0
53,677 + Ac3H11_167 0.37 +0.9
53,677 + Ac3H11_167 0.37 -0.2
53,677 + Ac3H11_167 0.37 +1.4
53,677 + Ac3H11_167 0.37 +0.7
53,677 + Ac3H11_167 0.37 -1.8
53,677 + Ac3H11_167 0.37 +0.6
53,678 - Ac3H11_167 0.37 +1.2
53,678 - Ac3H11_167 0.37 -1.5
53,678 - Ac3H11_167 0.37 -0.7
53,678 - Ac3H11_167 0.37 +0.2
53,686 + Ac3H11_167 0.37 -0.1
53,687 - Ac3H11_167 0.37 -0.6
53,734 + Ac3H11_167 0.39 +0.1
53,735 - Ac3H11_167 0.39 +1.8
53,735 - Ac3H11_167 0.39 +1.1
53,841 - Ac3H11_167 0.42 -1.2
53,844 + Ac3H11_167 0.42 +0.1
53,856 - Ac3H11_167 0.43 +0.1
53,881 + Ac3H11_167 0.44 +0.3
53,893 + Ac3H11_167 0.44 -0.2
53,894 - Ac3H11_167 0.44 -1.5
53,894 - Ac3H11_167 0.44 -0.8
54,103 + Ac3H11_167 0.51 +0.4
54,103 + Ac3H11_167 0.51 -0.8
54,104 - Ac3H11_167 0.51 +1.6
54,104 - Ac3H11_167 0.51 -0.6
54,362 - Ac3H11_167 0.60 -1.7
54,567 + Ac3H11_167 0.67 -0.4
54,568 - Ac3H11_167 0.67 +0.1
54,589 + Ac3H11_167 0.68 -0.4
54,589 + Ac3H11_167 0.68 +0.2
54,590 - Ac3H11_167 0.68 -2.0
54,590 - Ac3H11_167 0.68 +0.7
54,590 - Ac3H11_167 0.68 -1.0
54,667 + Ac3H11_167 0.71 +1.4
54,668 - Ac3H11_167 0.71 -0.5
54,668 - Ac3H11_167 0.71 +1.3
54,668 - Ac3H11_167 0.71 -1.8
54,946 + Ac3H11_167 0.80 -2.3
54,946 + Ac3H11_167 0.80 -2.0
54,946 + Ac3H11_167 0.80 -2.2
54,946 + Ac3H11_167 0.80 -0.0
54,946 + Ac3H11_167 0.80 -3.1
54,946 + Ac3H11_167 0.80 -1.4
54,947 - Ac3H11_167 0.80 -1.1
54,947 - Ac3H11_167 0.80 -0.6
54,947 - Ac3H11_167 0.80 +0.8
55,012 + Ac3H11_167 0.82 +0.7
55,012 + Ac3H11_167 0.82 -2.2
55,012 + Ac3H11_167 0.82 -1.3
55,012 + Ac3H11_167 0.82 -1.2
55,012 + Ac3H11_167 0.82 -0.8
55,013 - Ac3H11_167 0.82 -0.6
55,013 - Ac3H11_167 0.82 +0.9
55,013 - Ac3H11_167 0.82 -0.1
55,013 - Ac3H11_167 0.82 +0.5
55,013 - Ac3H11_167 0.82 -1.3
55,040 - Ac3H11_167 0.83 -0.5
55,051 + Ac3H11_167 0.84 -0.1
55,051 + Ac3H11_167 0.84 +0.2
55,052 - Ac3H11_167 0.84 +0.4
55,052 - Ac3H11_167 0.84 -0.0
55,387 + +0.3
55,387 + +0.9
55,408 + +0.7
55,438 + -2.2
55,438 + +0.6
55,438 + -1.1
55,439 - -0.9
55,439 - -2.0
55,516 + +0.5
55,516 + +1.7
55,517 - +1.0
55,599 + +0.9
55,627 + +0.3
55,628 - +0.2
55,736 + Ac3H11_168 0.24 +1.0
55,736 + Ac3H11_168 0.24 -0.5
55,737 - Ac3H11_168 0.24 +0.4
55,737 - Ac3H11_168 0.24 -2.3
55,737 - Ac3H11_168 0.24 -0.7
55,799 + Ac3H11_168 0.39 -2.1
55,799 + Ac3H11_168 0.39 -1.5
55,799 + Ac3H11_168 0.39 -1.1
55,799 + Ac3H11_168 0.39 -2.9
55,799 + Ac3H11_168 0.39 -1.7
55,799 + Ac3H11_168 0.39 -0.4
55,799 + Ac3H11_168 0.39 +1.5
55,799 + Ac3H11_168 0.39 -3.6
55,799 + Ac3H11_168 0.39 -0.5
55,800 - Ac3H11_168 0.40 -0.8
55,800 - Ac3H11_168 0.40 -1.0
55,842 - Ac3H11_168 0.50 +0.3
56,091 - +0.2
56,112 + -0.6
56,112 + +1.6
56,112 + -1.3
56,112 + -3.0
56,113 - +1.0
56,113 - +1.2
56,169 + Ac3H11_169 0.11 +0.3
56,169 + Ac3H11_169 0.11 -0.8
56,270 - Ac3H11_169 0.21 -0.4
56,270 - Ac3H11_169 0.21 +0.3
56,270 - Ac3H11_169 0.21 +0.6
56,270 - Ac3H11_169 0.21 +1.9
56,434 - Ac3H11_169 0.37 -0.2
56,434 - Ac3H11_169 0.37 -0.6
56,443 - Ac3H11_169 0.37 +0.8

Or see this region's nucleotide sequence