Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_1347

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAc3H11_1346 and Ac3H11_1347 are separated by 178 nucleotidesAc3H11_1347 and Ac3H11_1348 are separated by 48 nucleotidesAc3H11_1348 and Ac3H11_1349 are separated by 48 nucleotides Ac3H11_1346 - Ser-tRNA(Ala) deacylase; Gly-tRNA(Ala) deacylase, at 39,078 to 39,830 _1346 Ac3H11_1347 - hypothetical protein, at 40,009 to 40,308 _1347 Ac3H11_1348 - Creatinine amidohydrolase (EC 3.5.2.10), at 40,357 to 41,220 _1348 Ac3H11_1349 - hypothetical protein, at 41,269 to 41,745 _1349 Position (kb) 40 41Strain fitness (log2 ratio) -3 -2 -1 0 1at 39.727 kb on + strand, within Ac3H11_1346at 39.800 kb on - strandat 39.881 kb on + strandat 39.882 kb on - strandat 39.882 kb on - strandat 39.882 kb on - strandat 39.939 kb on + strandat 39.940 kb on - strandat 39.945 kb on + strandat 39.945 kb on + strandat 39.946 kb on - strandat 40.072 kb on + strand, within Ac3H11_1347at 40.072 kb on + strand, within Ac3H11_1347at 40.072 kb on + strand, within Ac3H11_1347at 40.073 kb on - strand, within Ac3H11_1347at 40.073 kb on - strand, within Ac3H11_1347at 40.073 kb on - strand, within Ac3H11_1347at 40.087 kb on + strand, within Ac3H11_1347at 40.087 kb on + strand, within Ac3H11_1347at 40.087 kb on + strand, within Ac3H11_1347at 40.087 kb on + strand, within Ac3H11_1347at 40.087 kb on + strand, within Ac3H11_1347at 40.087 kb on + strand, within Ac3H11_1347at 40.088 kb on - strand, within Ac3H11_1347at 41.277 kb on - strandat 41.277 kb on - strandat 41.279 kb on + strandat 41.279 kb on + strandat 41.280 kb on - strandat 41.280 kb on - strandat 41.280 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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39,727 + Ac3H11_1346 0.86 +1.0
39,800 - -3.0
39,881 + -2.6
39,882 - -0.3
39,882 - +0.3
39,882 - +1.3
39,939 + -2.2
39,940 - +0.0
39,945 + -2.2
39,945 + +0.8
39,946 - +1.1
40,072 + Ac3H11_1347 0.21 +0.7
40,072 + Ac3H11_1347 0.21 +1.2
40,072 + Ac3H11_1347 0.21 -0.4
40,073 - Ac3H11_1347 0.21 -0.1
40,073 - Ac3H11_1347 0.21 -2.2
40,073 - Ac3H11_1347 0.21 +1.3
40,087 + Ac3H11_1347 0.26 +0.3
40,087 + Ac3H11_1347 0.26 +0.7
40,087 + Ac3H11_1347 0.26 +0.9
40,087 + Ac3H11_1347 0.26 -0.5
40,087 + Ac3H11_1347 0.26 +1.7
40,087 + Ac3H11_1347 0.26 -3.0
40,088 - Ac3H11_1347 0.26 +1.2
41,277 - +0.1
41,277 - -2.6
41,279 + -1.2
41,279 + -1.3
41,280 - -0.2
41,280 - +0.7
41,280 - -0.3

Or see this region's nucleotide sequence