Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_1232

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAc3H11_1230 and Ac3H11_1231 are separated by 68 nucleotidesAc3H11_1231 and Ac3H11_1232 are separated by 80 nucleotidesAc3H11_1232 and Ac3H11_1233 are separated by 181 nucleotidesAc3H11_1233 and Ac3H11_1234 are separated by 127 nucleotides Ac3H11_1230 - Transcriptional regulator, TetR family, at 48,069 to 48,785 _1230 Ac3H11_1231 - Glutathione S-transferase family protein, at 48,854 to 49,468 _1231 Ac3H11_1232 - Adenylosuccinate lyase (EC 4.3.2.2), at 49,549 to 50,967 _1232 Ac3H11_1233 - YaeQ protein, at 51,149 to 51,709 _1233 Ac3H11_1234 - FIG00932085: hypothetical protein, at 51,837 to 52,142 _1234 Position (kb) 49 50 51Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 48.550 kb on + strand, within Ac3H11_1230at 48.550 kb on + strand, within Ac3H11_1230at 48.550 kb on + strand, within Ac3H11_1230at 48.550 kb on + strand, within Ac3H11_1230at 48.551 kb on - strand, within Ac3H11_1230at 48.551 kb on - strand, within Ac3H11_1230at 48.551 kb on - strand, within Ac3H11_1230at 48.551 kb on - strand, within Ac3H11_1230at 48.551 kb on - strand, within Ac3H11_1230at 48.551 kb on - strand, within Ac3H11_1230at 48.551 kb on - strand, within Ac3H11_1230at 48.551 kb on - strand, within Ac3H11_1230at 48.799 kb on + strandat 48.800 kb on - strandat 48.800 kb on - strandat 48.868 kb on + strandat 48.869 kb on - strandat 49.023 kb on + strand, within Ac3H11_1231at 49.023 kb on + strand, within Ac3H11_1231at 49.023 kb on + strand, within Ac3H11_1231at 49.024 kb on - strand, within Ac3H11_1231at 49.024 kb on - strand, within Ac3H11_1231at 49.024 kb on - strand, within Ac3H11_1231at 49.264 kb on - strand, within Ac3H11_1231at 49.392 kb on + strand, within Ac3H11_1231at 49.420 kb on + strandat 49.420 kb on + strandat 49.420 kb on + strandat 49.420 kb on + strandat 49.420 kb on + strandat 49.420 kb on + strandat 49.420 kb on + strandat 49.420 kb on + strandat 49.420 kb on + strandat 49.421 kb on - strandat 49.421 kb on - strandat 49.421 kb on - strandat 49.421 kb on - strandat 49.421 kb on - strandat 49.421 kb on - strandat 49.424 kb on + strandat 49.424 kb on + strandat 49.424 kb on + strandat 49.424 kb on + strandat 49.424 kb on + strandat 49.424 kb on + strandat 49.424 kb on + strandat 49.425 kb on - strandat 49.425 kb on - strandat 49.425 kb on - strandat 49.425 kb on - strandat 49.425 kb on - strandat 49.425 kb on - strandat 49.425 kb on - strandat 49.425 kb on - strandat 49.425 kb on - strandat 49.425 kb on - strandat 49.437 kb on + strandat 49.437 kb on + strandat 49.437 kb on + strandat 49.438 kb on - strandat 49.438 kb on - strandat 49.438 kb on - strandat 49.438 kb on - strandat 49.492 kb on + strandat 49.493 kb on - strandat 49.518 kb on + strandat 49.561 kb on + strandat 49.561 kb on + strandat 49.561 kb on + strandat 49.562 kb on - strandat 49.574 kb on + strandat 49.574 kb on + strandat 51.065 kb on + strandat 51.066 kb on - strandat 51.066 kb on - strandat 51.066 kb on - strandat 51.087 kb on - strandat 51.087 kb on - strandat 51.087 kb on - strandat 51.126 kb on + strandat 51.130 kb on + strandat 51.131 kb on - strandat 51.137 kb on + strandat 51.138 kb on - strandat 51.209 kb on + strand, within Ac3H11_1233at 51.209 kb on + strand, within Ac3H11_1233at 51.210 kb on - strand, within Ac3H11_1233at 51.212 kb on + strand, within Ac3H11_1233at 51.212 kb on + strand, within Ac3H11_1233at 51.212 kb on + strand, within Ac3H11_1233at 51.213 kb on - strand, within Ac3H11_1233at 51.213 kb on - strand, within Ac3H11_1233at 51.274 kb on + strand, within Ac3H11_1233at 51.274 kb on + strand, within Ac3H11_1233at 51.274 kb on + strand, within Ac3H11_1233at 51.274 kb on + strand, within Ac3H11_1233at 51.275 kb on - strand, within Ac3H11_1233at 51.275 kb on - strand, within Ac3H11_1233at 51.488 kb on + strand, within Ac3H11_1233at 51.707 kb on + strandat 51.707 kb on + strandat 51.708 kb on - strandat 51.779 kb on + strandat 51.833 kb on - strandat 51.833 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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48,550 + Ac3H11_1230 0.67 -1.9
48,550 + Ac3H11_1230 0.67 -1.0
48,550 + Ac3H11_1230 0.67 +3.0
48,550 + Ac3H11_1230 0.67 -2.1
48,551 - Ac3H11_1230 0.67 +0.1
48,551 - Ac3H11_1230 0.67 +0.9
48,551 - Ac3H11_1230 0.67 +1.0
48,551 - Ac3H11_1230 0.67 +1.7
48,551 - Ac3H11_1230 0.67 -2.3
48,551 - Ac3H11_1230 0.67 +0.3
48,551 - Ac3H11_1230 0.67 -0.9
48,551 - Ac3H11_1230 0.67 +0.7
48,799 + -0.2
48,800 - -0.4
48,800 - -0.9
48,868 + +1.7
48,869 - -2.8
49,023 + Ac3H11_1231 0.27 -1.8
49,023 + Ac3H11_1231 0.27 +1.0
49,023 + Ac3H11_1231 0.27 +1.0
49,024 - Ac3H11_1231 0.28 +0.3
49,024 - Ac3H11_1231 0.28 -0.3
49,024 - Ac3H11_1231 0.28 -0.6
49,264 - Ac3H11_1231 0.67 -0.1
49,392 + Ac3H11_1231 0.87 -0.1
49,420 + -1.5
49,420 + +0.1
49,420 + +0.8
49,420 + -0.1
49,420 + -0.2
49,420 + -3.3
49,420 + -0.4
49,420 + +0.5
49,420 + -2.0
49,421 - -2.8
49,421 - -1.4
49,421 - +0.1
49,421 - -0.8
49,421 - -0.8
49,421 - -3.2
49,424 + +1.7
49,424 + +0.9
49,424 + -1.5
49,424 + -0.8
49,424 + -0.6
49,424 + -1.4
49,424 + +0.3
49,425 - +0.2
49,425 - +1.8
49,425 - +2.2
49,425 - +2.3
49,425 - -2.5
49,425 - -0.5
49,425 - -0.4
49,425 - +0.2
49,425 - -3.0
49,425 - +0.0
49,437 + -1.1
49,437 + +1.1
49,437 + -0.3
49,438 - -2.6
49,438 - -0.2
49,438 - +1.5
49,438 - -2.9
49,492 + -0.2
49,493 - -1.9
49,518 + +2.7
49,561 + +1.0
49,561 + +0.7
49,561 + +0.1
49,562 - -0.6
49,574 + -0.3
49,574 + +0.9
51,065 + -2.5
51,066 - -2.6
51,066 - -0.1
51,066 - -0.3
51,087 - +1.6
51,087 - -0.9
51,087 - +0.7
51,126 + +0.5
51,130 + +1.6
51,131 - -3.1
51,137 + +0.2
51,138 - -2.7
51,209 + Ac3H11_1233 0.11 -0.6
51,209 + Ac3H11_1233 0.11 +0.0
51,210 - Ac3H11_1233 0.11 -1.8
51,212 + Ac3H11_1233 0.11 +0.7
51,212 + Ac3H11_1233 0.11 +2.5
51,212 + Ac3H11_1233 0.11 -0.3
51,213 - Ac3H11_1233 0.11 +1.3
51,213 - Ac3H11_1233 0.11 +1.3
51,274 + Ac3H11_1233 0.22 -0.2
51,274 + Ac3H11_1233 0.22 +1.1
51,274 + Ac3H11_1233 0.22 -1.7
51,274 + Ac3H11_1233 0.22 +1.8
51,275 - Ac3H11_1233 0.22 -2.6
51,275 - Ac3H11_1233 0.22 -2.5
51,488 + Ac3H11_1233 0.60 -2.2
51,707 + -0.0
51,707 + -1.2
51,708 - +0.1
51,779 + -0.8
51,833 - -0.4
51,833 - -2.0

Or see this region's nucleotide sequence