Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Ac3H11_1220 and Ac3H11_1221 are separated by 20 nucleotides Ac3H11_1221 and Ac3H11_1222 are separated by 14 nucleotides Ac3H11_1222 and Ac3H11_1223 are separated by 6 nucleotides
Ac3H11_1220 - FIG097052: Sugar transporter, at 38,965 to 40,248
_1220
Ac3H11_1221 - FIG002577: Putative lipoprotein precursor, at 40,269 to 40,808
_1221
Ac3H11_1222 - Oxidoreductase, short-chain dehydrogenase/reductase family (EC 1.1.1.-), at 40,823 to 41,587
_1222
Ac3H11_1223 - FIG002994: Putative transcriptional regulator, at 41,594 to 42,049
_1223
Position (kb) 40
41 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 39.276 kb on - strand, within Ac3H11_1220 at 39.328 kb on + strand, within Ac3H11_1220 at 39.337 kb on + strand, within Ac3H11_1220 at 39.338 kb on - strand, within Ac3H11_1220 at 39.450 kb on - strand, within Ac3H11_1220 at 39.532 kb on + strand, within Ac3H11_1220 at 39.757 kb on + strand, within Ac3H11_1220 at 39.758 kb on - strand, within Ac3H11_1220 at 39.758 kb on - strand, within Ac3H11_1220 at 40.022 kb on - strand, within Ac3H11_1220 at 40.022 kb on - strand, within Ac3H11_1220 at 40.105 kb on + strand, within Ac3H11_1220 at 40.105 kb on + strand, within Ac3H11_1220 at 40.105 kb on + strand, within Ac3H11_1220 at 40.105 kb on + strand, within Ac3H11_1220 at 40.156 kb on + strand at 40.156 kb on + strand at 40.204 kb on + strand at 40.204 kb on + strand at 40.205 kb on - strand at 40.205 kb on - strand at 40.386 kb on + strand, within Ac3H11_1221 at 40.386 kb on + strand, within Ac3H11_1221 at 40.387 kb on - strand, within Ac3H11_1221 at 40.387 kb on - strand, within Ac3H11_1221 at 40.515 kb on + strand, within Ac3H11_1221 at 40.515 kb on + strand, within Ac3H11_1221 at 40.516 kb on - strand, within Ac3H11_1221 at 40.516 kb on - strand, within Ac3H11_1221 at 40.647 kb on + strand, within Ac3H11_1221 at 40.648 kb on - strand, within Ac3H11_1221 at 40.648 kb on - strand, within Ac3H11_1221 at 40.707 kb on + strand, within Ac3H11_1221 at 40.707 kb on + strand, within Ac3H11_1221 at 40.708 kb on - strand, within Ac3H11_1221 at 40.708 kb on - strand, within Ac3H11_1221 at 40.708 kb on - strand, within Ac3H11_1221 at 40.708 kb on - strand, within Ac3H11_1221 at 40.708 kb on - strand, within Ac3H11_1221 at 41.072 kb on + strand, within Ac3H11_1222 at 41.072 kb on + strand, within Ac3H11_1222 at 41.072 kb on + strand, within Ac3H11_1222 at 41.072 kb on + strand, within Ac3H11_1222 at 41.085 kb on - strand, within Ac3H11_1222 at 41.087 kb on + strand, within Ac3H11_1222 at 41.088 kb on - strand, within Ac3H11_1222 at 41.150 kb on + strand, within Ac3H11_1222 at 41.150 kb on + strand, within Ac3H11_1222 at 41.290 kb on + strand, within Ac3H11_1222 at 41.328 kb on - strand, within Ac3H11_1222 at 41.510 kb on - strand, within Ac3H11_1222 at 41.510 kb on - strand, within Ac3H11_1222 at 41.510 kb on - strand, within Ac3H11_1222 at 41.552 kb on + strand at 41.552 kb on + strand at 41.606 kb on + strand at 41.606 kb on + strand at 41.679 kb on + strand, within Ac3H11_1223 at 41.679 kb on + strand, within Ac3H11_1223 at 41.680 kb on - strand, within Ac3H11_1223 at 41.680 kb on - strand, within Ac3H11_1223 at 41.699 kb on + strand, within Ac3H11_1223 at 41.700 kb on - strand, within Ac3H11_1223 at 41.748 kb on + strand, within Ac3H11_1223 at 41.748 kb on + strand, within Ac3H11_1223 at 41.748 kb on + strand, within Ac3H11_1223
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 39,276 - Ac3H11_1220 0.24 +1.8 39,328 + Ac3H11_1220 0.28 -1.6 39,337 + Ac3H11_1220 0.29 +1.3 39,338 - Ac3H11_1220 0.29 +0.7 39,450 - Ac3H11_1220 0.38 +0.4 39,532 + Ac3H11_1220 0.44 -0.8 39,757 + Ac3H11_1220 0.62 +2.3 39,758 - Ac3H11_1220 0.62 +0.6 39,758 - Ac3H11_1220 0.62 -0.5 40,022 - Ac3H11_1220 0.82 -1.2 40,022 - Ac3H11_1220 0.82 -1.9 40,105 + Ac3H11_1220 0.89 -2.9 40,105 + Ac3H11_1220 0.89 -1.5 40,105 + Ac3H11_1220 0.89 +0.2 40,105 + Ac3H11_1220 0.89 -0.6 40,156 + +0.8 40,156 + -3.3 40,204 + -1.6 40,204 + +1.9 40,205 - -3.6 40,205 - +0.7 40,386 + Ac3H11_1221 0.22 -1.1 40,386 + Ac3H11_1221 0.22 +0.0 40,387 - Ac3H11_1221 0.22 -2.7 40,387 - Ac3H11_1221 0.22 -1.6 40,515 + Ac3H11_1221 0.46 +0.3 40,515 + Ac3H11_1221 0.46 +0.9 40,516 - Ac3H11_1221 0.46 +1.1 40,516 - Ac3H11_1221 0.46 +0.5 40,647 + Ac3H11_1221 0.70 +0.4 40,648 - Ac3H11_1221 0.70 -1.5 40,648 - Ac3H11_1221 0.70 -1.1 40,707 + Ac3H11_1221 0.81 +0.1 40,707 + Ac3H11_1221 0.81 -0.8 40,708 - Ac3H11_1221 0.81 +0.9 40,708 - Ac3H11_1221 0.81 -0.6 40,708 - Ac3H11_1221 0.81 +0.6 40,708 - Ac3H11_1221 0.81 -1.2 40,708 - Ac3H11_1221 0.81 -0.5 41,072 + Ac3H11_1222 0.33 +1.6 41,072 + Ac3H11_1222 0.33 -0.0 41,072 + Ac3H11_1222 0.33 -1.5 41,072 + Ac3H11_1222 0.33 -0.4 41,085 - Ac3H11_1222 0.34 -0.2 41,087 + Ac3H11_1222 0.35 -0.7 41,088 - Ac3H11_1222 0.35 +0.5 41,150 + Ac3H11_1222 0.43 -0.3 41,150 + Ac3H11_1222 0.43 -0.9 41,290 + Ac3H11_1222 0.61 -2.0 41,328 - Ac3H11_1222 0.66 +1.3 41,510 - Ac3H11_1222 0.90 -1.1 41,510 - Ac3H11_1222 0.90 +0.7 41,510 - Ac3H11_1222 0.90 +0.5 41,552 + -1.5 41,552 + -0.2 41,606 + +1.7 41,606 + -2.8 41,679 + Ac3H11_1223 0.19 -0.3 41,679 + Ac3H11_1223 0.19 +0.0 41,680 - Ac3H11_1223 0.19 -0.8 41,680 - Ac3H11_1223 0.19 -2.3 41,699 + Ac3H11_1223 0.23 -0.9 41,700 - Ac3H11_1223 0.23 -3.3 41,748 + Ac3H11_1223 0.34 +0.1 41,748 + Ac3H11_1223 0.34 +1.5 41,748 + Ac3H11_1223 0.34 -0.2
Or see this region's nucleotide sequence