Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Ac3H11_1004 and Ac3H11_1005 are separated by 1 nucleotides Ac3H11_1005 and Ac3H11_1006 are separated by 108 nucleotides Ac3H11_1006 and Ac3H11_1007 are separated by 16 nucleotides
Ac3H11_1004 - ABC transporter permease protein, at 128,767 to 129,681
_1004
Ac3H11_1005 - Putrescine transport system permease protein potI, at 129,683 to 130,570
_1005
Ac3H11_1006 - Transcriptional regulator, GntR family, at 130,679 to 131,344
_1006
Ac3H11_1007 - Hydantoin racemase (EC 5.1.99.-), at 131,361 to 132,107
_1007
Position (kb) 129
130
131 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 128.927 kb on - strand, within Ac3H11_1004 at 128.959 kb on + strand, within Ac3H11_1004 at 128.959 kb on + strand, within Ac3H11_1004 at 128.959 kb on + strand, within Ac3H11_1004 at 128.959 kb on + strand, within Ac3H11_1004 at 128.960 kb on - strand, within Ac3H11_1004 at 128.960 kb on - strand, within Ac3H11_1004 at 129.022 kb on + strand, within Ac3H11_1004 at 129.022 kb on + strand, within Ac3H11_1004 at 129.023 kb on - strand, within Ac3H11_1004 at 129.023 kb on - strand, within Ac3H11_1004 at 129.023 kb on - strand, within Ac3H11_1004 at 129.025 kb on + strand, within Ac3H11_1004 at 129.025 kb on + strand, within Ac3H11_1004 at 129.026 kb on - strand, within Ac3H11_1004 at 129.026 kb on - strand, within Ac3H11_1004 at 129.319 kb on + strand, within Ac3H11_1004 at 129.319 kb on + strand, within Ac3H11_1004 at 129.574 kb on + strand, within Ac3H11_1004 at 129.575 kb on - strand, within Ac3H11_1004 at 129.575 kb on - strand, within Ac3H11_1004 at 129.758 kb on + strand at 129.759 kb on - strand at 129.759 kb on - strand at 129.759 kb on - strand at 130.250 kb on + strand, within Ac3H11_1005 at 130.250 kb on + strand, within Ac3H11_1005 at 130.345 kb on + strand, within Ac3H11_1005 at 130.345 kb on + strand, within Ac3H11_1005 at 130.345 kb on + strand, within Ac3H11_1005 at 130.345 kb on + strand, within Ac3H11_1005 at 130.345 kb on + strand, within Ac3H11_1005 at 130.345 kb on + strand, within Ac3H11_1005 at 130.466 kb on + strand, within Ac3H11_1005 at 130.569 kb on - strand at 130.582 kb on + strand at 130.583 kb on - strand at 130.583 kb on - strand at 130.583 kb on - strand at 130.583 kb on - strand at 130.623 kb on + strand at 130.624 kb on - strand at 130.666 kb on + strand at 130.666 kb on + strand at 130.682 kb on + strand at 130.682 kb on + strand at 130.683 kb on - strand at 130.683 kb on - strand at 130.887 kb on + strand, within Ac3H11_1006 at 130.887 kb on + strand, within Ac3H11_1006 at 130.888 kb on - strand, within Ac3H11_1006 at 131.056 kb on + strand, within Ac3H11_1006 at 131.057 kb on - strand, within Ac3H11_1006 at 131.057 kb on - strand, within Ac3H11_1006 at 131.057 kb on - strand, within Ac3H11_1006 at 131.138 kb on + strand, within Ac3H11_1006 at 131.138 kb on + strand, within Ac3H11_1006 at 131.139 kb on - strand, within Ac3H11_1006 at 131.139 kb on - strand, within Ac3H11_1006 at 131.490 kb on + strand, within Ac3H11_1007 at 131.490 kb on + strand, within Ac3H11_1007 at 131.490 kb on + strand, within Ac3H11_1007 at 131.490 kb on + strand, within Ac3H11_1007 at 131.491 kb on - strand, within Ac3H11_1007 at 131.491 kb on - strand, within Ac3H11_1007 at 131.491 kb on - strand, within Ac3H11_1007
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 128,927 - Ac3H11_1004 0.17 +1.0 128,959 + Ac3H11_1004 0.21 +1.6 128,959 + Ac3H11_1004 0.21 -1.8 128,959 + Ac3H11_1004 0.21 -1.2 128,959 + Ac3H11_1004 0.21 -1.3 128,960 - Ac3H11_1004 0.21 -0.0 128,960 - Ac3H11_1004 0.21 -0.6 129,022 + Ac3H11_1004 0.28 -1.1 129,022 + Ac3H11_1004 0.28 -1.0 129,023 - Ac3H11_1004 0.28 +1.0 129,023 - Ac3H11_1004 0.28 +0.2 129,023 - Ac3H11_1004 0.28 -1.4 129,025 + Ac3H11_1004 0.28 -1.2 129,025 + Ac3H11_1004 0.28 +1.9 129,026 - Ac3H11_1004 0.28 -0.2 129,026 - Ac3H11_1004 0.28 -2.5 129,319 + Ac3H11_1004 0.60 +1.2 129,319 + Ac3H11_1004 0.60 -1.9 129,574 + Ac3H11_1004 0.88 -0.1 129,575 - Ac3H11_1004 0.88 -3.1 129,575 - Ac3H11_1004 0.88 -0.8 129,758 + +0.5 129,759 - +0.6 129,759 - -1.9 129,759 - -0.7 130,250 + Ac3H11_1005 0.64 -0.4 130,250 + Ac3H11_1005 0.64 +1.1 130,345 + Ac3H11_1005 0.75 -0.4 130,345 + Ac3H11_1005 0.75 -0.4 130,345 + Ac3H11_1005 0.75 -0.3 130,345 + Ac3H11_1005 0.75 -3.5 130,345 + Ac3H11_1005 0.75 +0.8 130,345 + Ac3H11_1005 0.75 +0.9 130,466 + Ac3H11_1005 0.88 -0.4 130,569 - -0.0 130,582 + -0.2 130,583 - +1.2 130,583 - -2.4 130,583 - -0.9 130,583 - +1.8 130,623 + +0.8 130,624 - +1.6 130,666 + +0.9 130,666 + -0.4 130,682 + -1.0 130,682 + -0.8 130,683 - +0.5 130,683 - -2.0 130,887 + Ac3H11_1006 0.31 -0.6 130,887 + Ac3H11_1006 0.31 +2.0 130,888 - Ac3H11_1006 0.31 +0.7 131,056 + Ac3H11_1006 0.57 +2.2 131,057 - Ac3H11_1006 0.57 +1.2 131,057 - Ac3H11_1006 0.57 +0.7 131,057 - Ac3H11_1006 0.57 -0.9 131,138 + Ac3H11_1006 0.69 -1.6 131,138 + Ac3H11_1006 0.69 -1.6 131,139 - Ac3H11_1006 0.69 +0.0 131,139 - Ac3H11_1006 0.69 +0.3 131,490 + Ac3H11_1007 0.17 -0.9 131,490 + Ac3H11_1007 0.17 +1.3 131,490 + Ac3H11_1007 0.17 -0.2 131,490 + Ac3H11_1007 0.17 +1.6 131,491 - Ac3H11_1007 0.17 +0.7 131,491 - Ac3H11_1007 0.17 -1.2 131,491 - Ac3H11_1007 0.17 -0.3
Or see this region's nucleotide sequence