Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS30035

Experiment: Glucuronamide (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAZOBR_RS30030 and AZOBR_RS30035 are separated by 18 nucleotidesAZOBR_RS30035 and AZOBR_RS30040 are separated by 277 nucleotides AZOBR_RS30030: AZOBR_RS30030 - twin-arginine translocation pathway signal protein, at 75,570 to 77,759 _RS30030 AZOBR_RS30035: AZOBR_RS30035 - (2Fe-2S)-binding protein, at 77,778 to 78,236 _RS30035 AZOBR_RS30040: AZOBR_RS30040 - transcriptional regulator, at 78,514 to 79,407 _RS30040 Position (kb) 77 78 79Strain fitness (log2 ratio) -2 -1 0 1at 76.837 kb on + strand, within AZOBR_RS30030at 76.837 kb on + strand, within AZOBR_RS30030at 77.165 kb on - strand, within AZOBR_RS30030at 77.165 kb on - strand, within AZOBR_RS30030at 77.165 kb on - strand, within AZOBR_RS30030at 77.438 kb on - strand, within AZOBR_RS30030at 77.830 kb on + strand, within AZOBR_RS30035at 78.273 kb on - strandat 78.275 kb on + strandat 78.276 kb on - strandat 78.449 kb on + strandat 79.034 kb on - strand, within AZOBR_RS30040at 79.034 kb on - strand, within AZOBR_RS30040at 79.034 kb on - strand, within AZOBR_RS30040at 79.034 kb on - strand, within AZOBR_RS30040at 79.097 kb on - strand, within AZOBR_RS30040at 79.123 kb on + strand, within AZOBR_RS30040at 79.124 kb on - strand, within AZOBR_RS30040at 79.124 kb on - strand, within AZOBR_RS30040at 79.124 kb on - strand, within AZOBR_RS30040

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Per-strain Table

Position Strand Gene LocusTag Fraction Glucuronamide (N)
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76,837 + AZOBR_RS30030 0.58 -0.2
76,837 + AZOBR_RS30030 0.58 -2.5
77,165 - AZOBR_RS30030 0.73 +0.1
77,165 - AZOBR_RS30030 0.73 -0.1
77,165 - AZOBR_RS30030 0.73 -0.2
77,438 - AZOBR_RS30030 0.85 +0.1
77,830 + AZOBR_RS30035 0.11 -0.3
78,273 - -0.3
78,275 + +0.6
78,276 - -1.5
78,449 + -0.1
79,034 - AZOBR_RS30040 0.58 -0.1
79,034 - AZOBR_RS30040 0.58 +0.2
79,034 - AZOBR_RS30040 0.58 -0.1
79,034 - AZOBR_RS30040 0.58 -0.4
79,097 - AZOBR_RS30040 0.65 +0.0
79,123 + AZOBR_RS30040 0.68 +0.7
79,124 - AZOBR_RS30040 0.68 -0.2
79,124 - AZOBR_RS30040 0.68 +0.1
79,124 - AZOBR_RS30040 0.68 +0.2

Or see this region's nucleotide sequence