Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS26615

Experiment: Glucuronamide (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAZOBR_RS26610 and AZOBR_RS26615 are separated by 20 nucleotidesAZOBR_RS26615 and AZOBR_RS26620 are separated by 244 nucleotides AZOBR_RS26610: AZOBR_RS26610 - iron dicitrate transport regulator FecR, at 115,231 to 116,274 _RS26610 AZOBR_RS26615: AZOBR_RS26615 - RNA polymerase, at 116,295 to 116,888 _RS26615 AZOBR_RS26620: AZOBR_RS26620 - putative transcriptional regulator GntR family, at 117,133 to 117,807 _RS26620 Position (kb) 116 117Strain fitness (log2 ratio) -3 -2 -1 0 1at 115.397 kb on + strand, within AZOBR_RS26610at 115.397 kb on + strand, within AZOBR_RS26610at 115.622 kb on + strand, within AZOBR_RS26610at 115.622 kb on + strand, within AZOBR_RS26610at 115.623 kb on - strand, within AZOBR_RS26610at 116.313 kb on + strandat 116.313 kb on + strandat 116.313 kb on + strandat 116.314 kb on - strandat 116.314 kb on - strandat 116.314 kb on - strandat 116.764 kb on + strand, within AZOBR_RS26615at 116.765 kb on - strand, within AZOBR_RS26615at 116.765 kb on - strand, within AZOBR_RS26615at 116.765 kb on - strand, within AZOBR_RS26615at 117.134 kb on + strandat 117.458 kb on + strand, within AZOBR_RS26620at 117.458 kb on + strand, within AZOBR_RS26620at 117.458 kb on + strand, within AZOBR_RS26620at 117.459 kb on - strand, within AZOBR_RS26620at 117.605 kb on + strand, within AZOBR_RS26620at 117.686 kb on + strand, within AZOBR_RS26620at 117.867 kb on + strandat 117.867 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Glucuronamide (N)
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115,397 + AZOBR_RS26610 0.16 -0.7
115,397 + AZOBR_RS26610 0.16 -0.7
115,622 + AZOBR_RS26610 0.37 -0.9
115,622 + AZOBR_RS26610 0.37 +0.3
115,623 - AZOBR_RS26610 0.38 +0.1
116,313 + +0.6
116,313 + -0.2
116,313 + +0.2
116,314 - +0.1
116,314 - -3.1
116,314 - +1.0
116,764 + AZOBR_RS26615 0.79 +1.7
116,765 - AZOBR_RS26615 0.79 -0.3
116,765 - AZOBR_RS26615 0.79 -0.6
116,765 - AZOBR_RS26615 0.79 -0.4
117,134 + +0.1
117,458 + AZOBR_RS26620 0.48 +1.7
117,458 + AZOBR_RS26620 0.48 +1.3
117,458 + AZOBR_RS26620 0.48 +0.2
117,459 - AZOBR_RS26620 0.48 -0.0
117,605 + AZOBR_RS26620 0.70 -0.3
117,686 + AZOBR_RS26620 0.82 +0.2
117,867 + -0.9
117,867 + +0.5

Or see this region's nucleotide sequence