Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_27825

Experiment: m-Inositol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_27820 and AO353_27825 are separated by 278 nucleotidesAO353_27825 and AO353_27830 overlap by 4 nucleotidesAO353_27830 and AO353_27835 are separated by 217 nucleotides AO353_27820: AO353_27820 - glutamine--tRNA ligase, at 6,065,465 to 6,067,162 _27820 AO353_27825: AO353_27825 - peptidylprolyl isomerase, at 6,067,441 to 6,067,944 _27825 AO353_27830: AO353_27830 - UDP-2,3-diacylglucosamine hydrolase, at 6,067,941 to 6,068,690 _27830 AO353_27835: AO353_27835 - transposase, at 6,068,908 to 6,070,338 _27835 Position (kb) 6067 6068Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 6067.178 kb on - strandat 6067.178 kb on - strandat 6067.178 kb on - strandat 6067.178 kb on - strandat 6067.278 kb on + strandat 6067.433 kb on + strandat 6067.534 kb on + strand, within AO353_27825at 6067.534 kb on + strand, within AO353_27825at 6067.552 kb on + strand, within AO353_27825at 6067.565 kb on + strand, within AO353_27825at 6067.565 kb on + strand, within AO353_27825at 6067.690 kb on + strand, within AO353_27825at 6067.690 kb on + strand, within AO353_27825at 6068.684 kb on + strandat 6068.685 kb on - strandat 6068.685 kb on - strandat 6068.685 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m-Inositol (C)
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6,067,178 - -0.6
6,067,178 - -0.0
6,067,178 - -0.3
6,067,178 - +1.9
6,067,278 + +0.5
6,067,433 + +0.3
6,067,534 + AO353_27825 0.18 -0.3
6,067,534 + AO353_27825 0.18 +0.7
6,067,552 + AO353_27825 0.22 -0.2
6,067,565 + AO353_27825 0.25 -1.5
6,067,565 + AO353_27825 0.25 -1.2
6,067,690 + AO353_27825 0.49 +2.0
6,067,690 + AO353_27825 0.49 -2.8
6,068,684 + -1.7
6,068,685 - +0.7
6,068,685 - +1.3
6,068,685 - +1.0

Or see this region's nucleotide sequence