Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_27550

Experiment: m-Inositol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_27540 and AO353_27545 are separated by 28 nucleotidesAO353_27545 and AO353_27550 are separated by 91 nucleotidesAO353_27550 and AO353_27555 are separated by 80 nucleotidesAO353_27555 and AO353_27560 are separated by 222 nucleotides AO353_27540: AO353_27540 - TetR family transcriptional regulator, at 6,009,763 to 6,010,410 _27540 AO353_27545: AO353_27545 - hypothetical protein, at 6,010,439 to 6,011,152 _27545 AO353_27550: AO353_27550 - hypothetical protein, at 6,011,244 to 6,011,444 _27550 AO353_27555: AO353_27555 - hypothetical protein, at 6,011,525 to 6,011,716 _27555 AO353_27560: AO353_27560 - GDP-mannose pyrophosphatase, at 6,011,939 to 6,012,532 _27560 Position (kb) 6011 6012Strain fitness (log2 ratio) -2 -1 0 1 2at 6010.266 kb on - strand, within AO353_27540at 6010.335 kb on + strand, within AO353_27540at 6010.335 kb on + strand, within AO353_27540at 6010.367 kb on + strandat 6010.367 kb on + strandat 6010.367 kb on + strandat 6010.367 kb on + strandat 6010.367 kb on + strandat 6010.367 kb on + strandat 6010.367 kb on + strandat 6010.367 kb on + strandat 6010.367 kb on + strandat 6010.367 kb on + strandat 6010.367 kb on + strandat 6010.368 kb on - strandat 6010.368 kb on - strandat 6010.368 kb on - strandat 6010.368 kb on - strandat 6010.368 kb on - strandat 6010.468 kb on + strandat 6010.516 kb on + strand, within AO353_27545at 6010.516 kb on + strand, within AO353_27545at 6010.544 kb on + strand, within AO353_27545at 6010.544 kb on + strand, within AO353_27545at 6010.544 kb on + strand, within AO353_27545at 6010.544 kb on + strand, within AO353_27545at 6010.544 kb on + strand, within AO353_27545at 6010.545 kb on - strand, within AO353_27545at 6010.545 kb on - strand, within AO353_27545at 6010.545 kb on - strand, within AO353_27545at 6010.545 kb on - strand, within AO353_27545at 6010.545 kb on - strand, within AO353_27545at 6010.741 kb on + strand, within AO353_27545at 6010.760 kb on + strand, within AO353_27545at 6010.760 kb on + strand, within AO353_27545at 6010.760 kb on + strand, within AO353_27545at 6010.760 kb on + strand, within AO353_27545at 6010.761 kb on - strand, within AO353_27545at 6010.787 kb on + strand, within AO353_27545at 6010.787 kb on + strand, within AO353_27545at 6010.787 kb on + strand, within AO353_27545at 6010.787 kb on + strand, within AO353_27545at 6010.788 kb on - strand, within AO353_27545at 6010.788 kb on - strand, within AO353_27545at 6010.788 kb on - strand, within AO353_27545at 6010.788 kb on - strand, within AO353_27545at 6010.819 kb on - strand, within AO353_27545at 6010.924 kb on - strand, within AO353_27545at 6010.924 kb on - strand, within AO353_27545at 6010.924 kb on - strand, within AO353_27545at 6011.182 kb on - strandat 6011.274 kb on + strand, within AO353_27550at 6011.274 kb on + strand, within AO353_27550at 6011.460 kb on + strandat 6011.460 kb on + strandat 6011.461 kb on - strandat 6011.533 kb on + strandat 6011.534 kb on - strandat 6011.583 kb on + strand, within AO353_27555at 6011.636 kb on - strand, within AO353_27555at 6011.716 kb on + strandat 6011.716 kb on + strandat 6011.716 kb on + strandat 6011.716 kb on + strandat 6011.716 kb on + strandat 6011.716 kb on + strandat 6011.717 kb on - strandat 6011.717 kb on - strandat 6011.717 kb on - strandat 6011.717 kb on - strandat 6011.717 kb on - strandat 6011.734 kb on + strandat 6011.735 kb on - strandat 6011.751 kb on + strandat 6011.751 kb on + strandat 6011.751 kb on + strandat 6011.751 kb on + strandat 6011.751 kb on + strandat 6011.752 kb on - strandat 6011.752 kb on - strandat 6011.756 kb on + strandat 6011.756 kb on + strandat 6011.756 kb on + strandat 6011.756 kb on + strandat 6011.756 kb on + strandat 6011.756 kb on + strandat 6011.756 kb on + strandat 6011.756 kb on + strandat 6011.756 kb on + strandat 6011.756 kb on + strandat 6011.757 kb on - strandat 6011.757 kb on - strandat 6011.757 kb on - strandat 6011.757 kb on - strandat 6011.757 kb on - strandat 6011.757 kb on - strandat 6011.757 kb on - strandat 6011.768 kb on - strandat 6011.786 kb on + strandat 6011.786 kb on + strandat 6011.786 kb on + strandat 6011.786 kb on + strandat 6011.787 kb on - strandat 6011.787 kb on - strandat 6011.819 kb on + strandat 6011.820 kb on - strandat 6011.820 kb on - strandat 6011.820 kb on - strandat 6011.820 kb on - strandat 6011.820 kb on - strandat 6011.820 kb on - strandat 6011.820 kb on - strandat 6011.820 kb on - strandat 6011.858 kb on + strandat 6011.858 kb on + strandat 6011.859 kb on - strandat 6011.860 kb on + strandat 6011.860 kb on + strandat 6011.860 kb on + strandat 6011.860 kb on + strandat 6011.860 kb on + strandat 6011.861 kb on - strandat 6011.861 kb on - strandat 6011.861 kb on - strandat 6011.861 kb on - strandat 6011.861 kb on - strandat 6011.861 kb on - strandat 6011.861 kb on - strandat 6011.861 kb on - strandat 6011.941 kb on - strandat 6011.956 kb on + strandat 6012.018 kb on + strand, within AO353_27560at 6012.018 kb on + strand, within AO353_27560at 6012.019 kb on - strand, within AO353_27560at 6012.019 kb on - strand, within AO353_27560at 6012.120 kb on + strand, within AO353_27560at 6012.120 kb on + strand, within AO353_27560at 6012.120 kb on + strand, within AO353_27560at 6012.120 kb on + strand, within AO353_27560at 6012.121 kb on - strand, within AO353_27560at 6012.121 kb on - strandat 6012.121 kb on - strand, within AO353_27560at 6012.171 kb on + strand, within AO353_27560at 6012.171 kb on + strand, within AO353_27560at 6012.171 kb on + strand, within AO353_27560at 6012.171 kb on + strand, within AO353_27560at 6012.172 kb on - strand, within AO353_27560at 6012.172 kb on - strand, within AO353_27560at 6012.172 kb on - strand, within AO353_27560at 6012.172 kb on - strand, within AO353_27560at 6012.172 kb on - strand, within AO353_27560at 6012.172 kb on - strand, within AO353_27560at 6012.172 kb on - strand, within AO353_27560at 6012.172 kb on - strand, within AO353_27560at 6012.172 kb on - strand, within AO353_27560at 6012.191 kb on + strand, within AO353_27560at 6012.191 kb on + strand, within AO353_27560at 6012.191 kb on + strand, within AO353_27560at 6012.191 kb on + strand, within AO353_27560at 6012.191 kb on + strand, within AO353_27560at 6012.192 kb on - strand, within AO353_27560at 6012.192 kb on - strand, within AO353_27560at 6012.341 kb on + strand, within AO353_27560at 6012.341 kb on + strand, within AO353_27560at 6012.342 kb on - strand, within AO353_27560at 6012.342 kb on - strand, within AO353_27560at 6012.399 kb on + strand, within AO353_27560

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Per-strain Table

Position Strand Gene LocusTag Fraction m-Inositol (C)
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6,010,266 - AO353_27540 0.78 -0.0
6,010,335 + AO353_27540 0.88 -1.3
6,010,335 + AO353_27540 0.88 -0.2
6,010,367 + +1.3
6,010,367 + -0.3
6,010,367 + +0.4
6,010,367 + +0.3
6,010,367 + -0.1
6,010,367 + -1.4
6,010,367 + +0.1
6,010,367 + +0.9
6,010,367 + -0.8
6,010,367 + +2.3
6,010,367 + -2.3
6,010,368 - -0.1
6,010,368 - -1.0
6,010,368 - -1.7
6,010,368 - +0.9
6,010,368 - -0.0
6,010,468 + +0.6
6,010,516 + AO353_27545 0.11 +0.4
6,010,516 + AO353_27545 0.11 +0.3
6,010,544 + AO353_27545 0.15 +0.7
6,010,544 + AO353_27545 0.15 +1.5
6,010,544 + AO353_27545 0.15 -0.2
6,010,544 + AO353_27545 0.15 +0.3
6,010,544 + AO353_27545 0.15 -0.1
6,010,545 - AO353_27545 0.15 -0.5
6,010,545 - AO353_27545 0.15 -0.0
6,010,545 - AO353_27545 0.15 -2.0
6,010,545 - AO353_27545 0.15 +0.2
6,010,545 - AO353_27545 0.15 -0.7
6,010,741 + AO353_27545 0.42 +0.1
6,010,760 + AO353_27545 0.45 +0.3
6,010,760 + AO353_27545 0.45 -0.2
6,010,760 + AO353_27545 0.45 -0.0
6,010,760 + AO353_27545 0.45 +1.1
6,010,761 - AO353_27545 0.45 -0.3
6,010,787 + AO353_27545 0.49 -0.3
6,010,787 + AO353_27545 0.49 +1.3
6,010,787 + AO353_27545 0.49 +2.3
6,010,787 + AO353_27545 0.49 -1.3
6,010,788 - AO353_27545 0.49 -0.0
6,010,788 - AO353_27545 0.49 -1.0
6,010,788 - AO353_27545 0.49 -0.3
6,010,788 - AO353_27545 0.49 -0.3
6,010,819 - AO353_27545 0.53 +0.3
6,010,924 - AO353_27545 0.68 +0.6
6,010,924 - AO353_27545 0.68 -0.7
6,010,924 - AO353_27545 0.68 -0.7
6,011,182 - -1.0
6,011,274 + AO353_27550 0.15 -1.4
6,011,274 + AO353_27550 0.15 -1.3
6,011,460 + -0.5
6,011,460 + -0.7
6,011,461 - -1.3
6,011,533 + -0.7
6,011,534 - +0.7
6,011,583 + AO353_27555 0.30 -0.1
6,011,636 - AO353_27555 0.58 +0.4
6,011,716 + +1.8
6,011,716 + -0.1
6,011,716 + -1.8
6,011,716 + +0.4
6,011,716 + +1.0
6,011,716 + +2.3
6,011,717 - +0.3
6,011,717 - -1.3
6,011,717 - -1.7
6,011,717 - +0.8
6,011,717 - -0.5
6,011,734 + +2.3
6,011,735 - -2.4
6,011,751 + +0.7
6,011,751 + +0.5
6,011,751 + -1.7
6,011,751 + -0.7
6,011,751 + -0.8
6,011,752 - -0.7
6,011,752 - +0.7
6,011,756 + -0.3
6,011,756 + -0.0
6,011,756 + -2.4
6,011,756 + -1.2
6,011,756 + -1.0
6,011,756 + -0.0
6,011,756 + +0.7
6,011,756 + +0.3
6,011,756 + +0.7
6,011,756 + +2.1
6,011,757 - +0.3
6,011,757 - -0.3
6,011,757 - +0.2
6,011,757 - -0.7
6,011,757 - +0.0
6,011,757 - -0.3
6,011,757 - +0.2
6,011,768 - +0.7
6,011,786 + -0.1
6,011,786 + -0.7
6,011,786 + +1.0
6,011,786 + +0.5
6,011,787 - -0.2
6,011,787 - +0.0
6,011,819 + +0.3
6,011,820 - -0.7
6,011,820 - +0.7
6,011,820 - +1.3
6,011,820 - -0.4
6,011,820 - -1.3
6,011,820 - -0.1
6,011,820 - +0.3
6,011,820 - +0.1
6,011,858 + +0.9
6,011,858 + -1.0
6,011,859 - +0.7
6,011,860 + -0.2
6,011,860 + +0.6
6,011,860 + +1.3
6,011,860 + +1.1
6,011,860 + -0.5
6,011,861 - +1.9
6,011,861 - +0.8
6,011,861 - +0.1
6,011,861 - -0.0
6,011,861 - -0.4
6,011,861 - -0.1
6,011,861 - +0.1
6,011,861 - -0.3
6,011,941 - +0.9
6,011,956 + +0.1
6,012,018 + AO353_27560 0.13 -0.2
6,012,018 + AO353_27560 0.13 +0.5
6,012,019 - AO353_27560 0.13 +1.2
6,012,019 - AO353_27560 0.13 +0.8
6,012,120 + AO353_27560 0.30 -0.5
6,012,120 + AO353_27560 0.30 +1.3
6,012,120 + AO353_27560 0.30 +0.3
6,012,120 + AO353_27560 0.30 -0.6
6,012,121 - AO353_27560 0.31 -0.6
6,012,121 - +0.3
6,012,121 - AO353_27560 0.31 -0.1
6,012,171 + AO353_27560 0.39 -1.5
6,012,171 + AO353_27560 0.39 -0.5
6,012,171 + AO353_27560 0.39 -0.4
6,012,171 + AO353_27560 0.39 -0.9
6,012,172 - AO353_27560 0.39 +0.5
6,012,172 - AO353_27560 0.39 -0.1
6,012,172 - AO353_27560 0.39 -0.1
6,012,172 - AO353_27560 0.39 -0.1
6,012,172 - AO353_27560 0.39 +0.3
6,012,172 - AO353_27560 0.39 +0.8
6,012,172 - AO353_27560 0.39 +1.9
6,012,172 - AO353_27560 0.39 +0.1
6,012,172 - AO353_27560 0.39 -1.3
6,012,191 + AO353_27560 0.42 +1.7
6,012,191 + AO353_27560 0.42 -1.0
6,012,191 + AO353_27560 0.42 +0.4
6,012,191 + AO353_27560 0.42 -0.5
6,012,191 + AO353_27560 0.42 -0.7
6,012,192 - AO353_27560 0.43 +1.1
6,012,192 - AO353_27560 0.43 -1.3
6,012,341 + AO353_27560 0.68 -0.9
6,012,341 + AO353_27560 0.68 +0.7
6,012,342 - AO353_27560 0.68 +0.6
6,012,342 - AO353_27560 0.68 +1.6
6,012,399 + AO353_27560 0.77 -0.8

Or see this region's nucleotide sequence