Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_27440

Experiment: m-Inositol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_27425 and AO353_27430 are separated by 59 nucleotidesAO353_27430 and AO353_27435 overlap by 4 nucleotidesAO353_27435 and AO353_27440 are separated by 88 nucleotidesAO353_27440 and AO353_27445 are separated by 2 nucleotidesAO353_27445 and AO353_27450 are separated by 3 nucleotides AO353_27425: AO353_27425 - transcriptional regulator, at 5,989,767 to 5,990,084 _27425 AO353_27430: AO353_27430 - hypothetical protein, at 5,990,144 to 5,990,563 _27430 AO353_27435: AO353_27435 - hypothetical protein, at 5,990,560 to 5,990,781 _27435 AO353_27440: AO353_27440 - hypothetical protein, at 5,990,870 to 5,991,106 _27440 AO353_27445: AO353_27445 - hypothetical protein, at 5,991,109 to 5,991,366 _27445 AO353_27450: AO353_27450 - integrase, at 5,991,370 to 5,992,434 _27450 Position (kb) 5990 5991 5992Strain fitness (log2 ratio) -2 -1 0 1 2at 5989.887 kb on + strand, within AO353_27425at 5989.887 kb on + strand, within AO353_27425at 5989.888 kb on - strand, within AO353_27425at 5989.888 kb on - strand, within AO353_27425at 5989.888 kb on - strand, within AO353_27425at 5989.888 kb on - strand, within AO353_27425at 5989.888 kb on - strand, within AO353_27425at 5989.989 kb on + strand, within AO353_27425at 5989.990 kb on - strand, within AO353_27425at 5990.034 kb on + strand, within AO353_27425at 5990.034 kb on + strand, within AO353_27425at 5990.035 kb on - strand, within AO353_27425at 5990.035 kb on - strand, within AO353_27425at 5990.035 kb on - strand, within AO353_27425at 5990.082 kb on + strandat 5990.083 kb on - strandat 5990.083 kb on - strandat 5990.083 kb on - strandat 5990.296 kb on + strand, within AO353_27430at 5990.296 kb on + strand, within AO353_27430at 5990.296 kb on + strand, within AO353_27430at 5990.297 kb on - strand, within AO353_27430at 5990.307 kb on + strand, within AO353_27430at 5990.308 kb on - strand, within AO353_27430at 5990.308 kb on - strand, within AO353_27430at 5990.308 kb on - strand, within AO353_27430at 5990.503 kb on + strand, within AO353_27430at 5990.503 kb on + strand, within AO353_27430at 5990.504 kb on - strand, within AO353_27430at 5990.507 kb on - strand, within AO353_27430at 5990.507 kb on - strand, within AO353_27430at 5990.663 kb on - strand, within AO353_27435at 5990.748 kb on - strand, within AO353_27435at 5990.807 kb on - strandat 5991.010 kb on + strand, within AO353_27440at 5991.010 kb on + strand, within AO353_27440at 5991.010 kb on + strand, within AO353_27440at 5991.010 kb on + strand, within AO353_27440at 5991.010 kb on + strand, within AO353_27440at 5991.010 kb on + strand, within AO353_27440at 5991.010 kb on + strand, within AO353_27440at 5991.011 kb on - strand, within AO353_27440at 5991.011 kb on - strand, within AO353_27440at 5991.011 kb on - strand, within AO353_27440at 5991.011 kb on - strand, within AO353_27440at 5991.011 kb on - strand, within AO353_27440at 5991.012 kb on + strand, within AO353_27440at 5991.013 kb on - strand, within AO353_27440at 5991.013 kb on - strand, within AO353_27440at 5991.013 kb on - strand, within AO353_27440at 5991.099 kb on - strandat 5991.099 kb on - strandat 5991.100 kb on + strandat 5991.100 kb on + strandat 5991.100 kb on + strandat 5991.100 kb on + strandat 5991.100 kb on + strandat 5991.100 kb on + strandat 5991.100 kb on + strandat 5991.100 kb on + strandat 5991.100 kb on + strandat 5991.100 kb on + strandat 5991.100 kb on + strandat 5991.101 kb on - strandat 5991.101 kb on - strandat 5991.101 kb on - strandat 5991.101 kb on - strandat 5991.101 kb on - strandat 5991.101 kb on - strandat 5991.101 kb on - strandat 5991.101 kb on - strandat 5991.125 kb on - strandat 5991.173 kb on + strand, within AO353_27445at 5991.173 kb on + strand, within AO353_27445at 5991.174 kb on - strand, within AO353_27445at 5991.174 kb on - strand, within AO353_27445at 5991.185 kb on - strand, within AO353_27445at 5991.278 kb on - strand, within AO353_27445at 5991.278 kb on - strand, within AO353_27445at 5991.293 kb on + strand, within AO353_27445at 5991.318 kb on + strand, within AO353_27445at 5991.319 kb on - strand, within AO353_27445at 5991.359 kb on + strandat 5991.359 kb on + strandat 5991.359 kb on + strandat 5991.360 kb on - strandat 5991.360 kb on - strandat 5991.364 kb on + strandat 5991.364 kb on + strandat 5991.461 kb on - strandat 5991.461 kb on - strandat 5991.461 kb on - strandat 5991.461 kb on - strandat 5991.461 kb on - strandat 5991.463 kb on + strandat 5991.463 kb on + strandat 5991.463 kb on + strandat 5991.464 kb on - strandat 5991.466 kb on + strandat 5991.466 kb on + strandat 5991.466 kb on + strandat 5991.466 kb on + strandat 5991.466 kb on + strandat 5991.466 kb on + strandat 5991.467 kb on - strandat 5991.467 kb on - strandat 5991.467 kb on - strandat 5991.467 kb on - strandat 5991.467 kb on - strandat 5991.467 kb on - strandat 5991.607 kb on + strand, within AO353_27450at 5991.607 kb on + strand, within AO353_27450at 5991.607 kb on + strand, within AO353_27450at 5991.607 kb on + strand, within AO353_27450at 5991.607 kb on + strand, within AO353_27450at 5991.608 kb on - strand, within AO353_27450at 5991.737 kb on - strand, within AO353_27450at 5991.795 kb on + strand, within AO353_27450at 5991.795 kb on + strand, within AO353_27450at 5991.796 kb on - strand, within AO353_27450at 5991.796 kb on - strand, within AO353_27450at 5991.861 kb on + strand, within AO353_27450at 5991.864 kb on + strand, within AO353_27450at 5991.864 kb on + strand, within AO353_27450at 5991.865 kb on - strand, within AO353_27450at 5991.865 kb on - strand, within AO353_27450at 5991.865 kb on - strand, within AO353_27450at 5991.886 kb on + strand, within AO353_27450at 5991.887 kb on - strand, within AO353_27450at 5991.961 kb on + strand, within AO353_27450at 5991.989 kb on + strand, within AO353_27450at 5991.989 kb on + strand, within AO353_27450at 5991.989 kb on + strand, within AO353_27450at 5991.989 kb on + strand, within AO353_27450at 5991.990 kb on - strand, within AO353_27450at 5991.990 kb on - strand, within AO353_27450at 5991.990 kb on - strand, within AO353_27450at 5991.990 kb on - strand, within AO353_27450at 5991.990 kb on - strand, within AO353_27450at 5991.990 kb on - strand, within AO353_27450at 5992.065 kb on + strand, within AO353_27450at 5992.065 kb on + strand, within AO353_27450

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Per-strain Table

Position Strand Gene LocusTag Fraction m-Inositol (C)
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5,989,887 + AO353_27425 0.38 +1.7
5,989,887 + AO353_27425 0.38 -0.1
5,989,888 - AO353_27425 0.38 -0.7
5,989,888 - AO353_27425 0.38 +1.3
5,989,888 - AO353_27425 0.38 +0.1
5,989,888 - AO353_27425 0.38 +1.3
5,989,888 - AO353_27425 0.38 -0.3
5,989,989 + AO353_27425 0.70 +0.4
5,989,990 - AO353_27425 0.70 +1.3
5,990,034 + AO353_27425 0.84 +1.9
5,990,034 + AO353_27425 0.84 -0.7
5,990,035 - AO353_27425 0.84 +0.1
5,990,035 - AO353_27425 0.84 -0.3
5,990,035 - AO353_27425 0.84 -0.3
5,990,082 + -0.5
5,990,083 - +0.7
5,990,083 - +0.7
5,990,083 - +0.3
5,990,296 + AO353_27430 0.36 -1.4
5,990,296 + AO353_27430 0.36 +2.3
5,990,296 + AO353_27430 0.36 +0.9
5,990,297 - AO353_27430 0.36 -1.0
5,990,307 + AO353_27430 0.39 -1.1
5,990,308 - AO353_27430 0.39 +0.3
5,990,308 - AO353_27430 0.39 +0.3
5,990,308 - AO353_27430 0.39 -0.7
5,990,503 + AO353_27430 0.85 +1.0
5,990,503 + AO353_27430 0.85 -0.9
5,990,504 - AO353_27430 0.86 -0.7
5,990,507 - AO353_27430 0.86 -0.3
5,990,507 - AO353_27430 0.86 -0.1
5,990,663 - AO353_27435 0.46 +0.3
5,990,748 - AO353_27435 0.85 -0.9
5,990,807 - +0.8
5,991,010 + AO353_27440 0.59 -0.7
5,991,010 + AO353_27440 0.59 -0.2
5,991,010 + AO353_27440 0.59 +0.5
5,991,010 + AO353_27440 0.59 +0.9
5,991,010 + AO353_27440 0.59 +1.3
5,991,010 + AO353_27440 0.59 +0.4
5,991,010 + AO353_27440 0.59 +0.3
5,991,011 - AO353_27440 0.59 +2.0
5,991,011 - AO353_27440 0.59 +0.3
5,991,011 - AO353_27440 0.59 +1.3
5,991,011 - AO353_27440 0.59 -1.3
5,991,011 - AO353_27440 0.59 +0.8
5,991,012 + AO353_27440 0.60 -0.1
5,991,013 - AO353_27440 0.60 +0.3
5,991,013 - AO353_27440 0.60 -1.0
5,991,013 - AO353_27440 0.60 -0.0
5,991,099 - -1.3
5,991,099 - -1.4
5,991,100 + -0.3
5,991,100 + -1.4
5,991,100 + -0.7
5,991,100 + -0.0
5,991,100 + -1.4
5,991,100 + -1.9
5,991,100 + +0.7
5,991,100 + +0.0
5,991,100 + +0.1
5,991,100 + +0.3
5,991,100 + +1.3
5,991,101 - +1.9
5,991,101 - +0.7
5,991,101 - -0.1
5,991,101 - +1.0
5,991,101 - +0.6
5,991,101 - +0.3
5,991,101 - +0.4
5,991,101 - -1.3
5,991,125 - +0.4
5,991,173 + AO353_27445 0.25 +0.4
5,991,173 + AO353_27445 0.25 -1.2
5,991,174 - AO353_27445 0.25 +2.6
5,991,174 - AO353_27445 0.25 +0.5
5,991,185 - AO353_27445 0.29 -0.1
5,991,278 - AO353_27445 0.66 -0.2
5,991,278 - AO353_27445 0.66 +0.6
5,991,293 + AO353_27445 0.71 +0.8
5,991,318 + AO353_27445 0.81 -0.9
5,991,319 - AO353_27445 0.81 -0.0
5,991,359 + +1.3
5,991,359 + +0.3
5,991,359 + +1.3
5,991,360 - -0.0
5,991,360 - +1.6
5,991,364 + +0.3
5,991,364 + -0.2
5,991,461 - -0.2
5,991,461 - -0.1
5,991,461 - +0.5
5,991,461 - -1.3
5,991,461 - +2.6
5,991,463 + -0.4
5,991,463 + -0.8
5,991,463 + -1.2
5,991,464 - +0.1
5,991,466 + -0.3
5,991,466 + +1.9
5,991,466 + +0.1
5,991,466 + +0.3
5,991,466 + +0.7
5,991,466 + -0.1
5,991,467 - +0.1
5,991,467 - -0.0
5,991,467 - +0.9
5,991,467 - -0.3
5,991,467 - -0.3
5,991,467 - -0.0
5,991,607 + AO353_27450 0.22 -0.2
5,991,607 + AO353_27450 0.22 -0.2
5,991,607 + AO353_27450 0.22 -0.5
5,991,607 + AO353_27450 0.22 +0.4
5,991,607 + AO353_27450 0.22 +0.4
5,991,608 - AO353_27450 0.22 +0.4
5,991,737 - AO353_27450 0.34 -0.3
5,991,795 + AO353_27450 0.40 +0.7
5,991,795 + AO353_27450 0.40 -0.3
5,991,796 - AO353_27450 0.40 -1.7
5,991,796 - AO353_27450 0.40 +0.5
5,991,861 + AO353_27450 0.46 -0.8
5,991,864 + AO353_27450 0.46 -0.0
5,991,864 + AO353_27450 0.46 +0.3
5,991,865 - AO353_27450 0.46 -0.0
5,991,865 - AO353_27450 0.46 +0.7
5,991,865 - AO353_27450 0.46 -0.2
5,991,886 + AO353_27450 0.48 +2.0
5,991,887 - AO353_27450 0.49 +0.2
5,991,961 + AO353_27450 0.55 -0.5
5,991,989 + AO353_27450 0.58 +0.3
5,991,989 + AO353_27450 0.58 -0.3
5,991,989 + AO353_27450 0.58 -1.0
5,991,989 + AO353_27450 0.58 -0.4
5,991,990 - AO353_27450 0.58 -1.5
5,991,990 - AO353_27450 0.58 -1.2
5,991,990 - AO353_27450 0.58 -0.9
5,991,990 - AO353_27450 0.58 +0.7
5,991,990 - AO353_27450 0.58 -0.3
5,991,990 - AO353_27450 0.58 +0.7
5,992,065 + AO353_27450 0.65 -0.6
5,992,065 + AO353_27450 0.65 +0.4

Or see this region's nucleotide sequence