Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_23915

Experiment: m-Inositol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_23905 and AO353_23910 are separated by 2 nucleotidesAO353_23910 and AO353_23915 are separated by 179 nucleotidesAO353_23915 and AO353_23920 are separated by 0 nucleotidesAO353_23920 and AO353_23925 overlap by 11 nucleotides AO353_23905: AO353_23905 - GntR family transcriptional regulator, at 5,245,604 to 5,246,482 _23905 AO353_23910: AO353_23910 - response regulator, at 5,246,485 to 5,246,847 _23910 AO353_23915: AO353_23915 - chemotaxis protein CheY, at 5,247,027 to 5,250,494 _23915 AO353_23920: AO353_23920 - chemotaxis protein CheR, at 5,250,495 to 5,251,316 _23920 AO353_23925: AO353_23925 - histidine kinase, at 5,251,306 to 5,252,520 _23925 Position (kb) 5247 5248 5249 5250 5251Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 5246.244 kb on + strand, within AO353_23905at 5246.245 kb on - strand, within AO353_23905at 5246.245 kb on - strand, within AO353_23905at 5246.245 kb on - strand, within AO353_23905at 5246.266 kb on + strand, within AO353_23905at 5246.266 kb on + strand, within AO353_23905at 5246.267 kb on - strand, within AO353_23905at 5246.326 kb on + strand, within AO353_23905at 5246.327 kb on - strand, within AO353_23905at 5246.452 kb on + strandat 5246.452 kb on + strandat 5246.494 kb on - strandat 5246.575 kb on - strand, within AO353_23910at 5246.575 kb on - strand, within AO353_23910at 5246.575 kb on - strand, within AO353_23910at 5246.777 kb on - strand, within AO353_23910at 5246.777 kb on - strand, within AO353_23910at 5246.805 kb on + strand, within AO353_23910at 5246.806 kb on - strand, within AO353_23910at 5246.819 kb on - strandat 5246.891 kb on + strandat 5246.891 kb on + strandat 5246.891 kb on + strandat 5246.891 kb on + strandat 5246.891 kb on + strandat 5246.891 kb on + strandat 5246.892 kb on - strandat 5246.892 kb on - strandat 5246.892 kb on - strandat 5246.892 kb on - strandat 5246.961 kb on + strandat 5246.962 kb on - strandat 5247.003 kb on - strandat 5247.003 kb on - strandat 5247.144 kb on + strandat 5247.144 kb on + strandat 5247.144 kb on + strandat 5247.144 kb on + strandat 5247.144 kb on + strandat 5247.144 kb on + strandat 5247.144 kb on + strandat 5247.144 kb on + strandat 5247.145 kb on - strandat 5247.145 kb on - strandat 5247.145 kb on - strandat 5247.145 kb on - strandat 5247.145 kb on - strandat 5247.145 kb on - strandat 5247.409 kb on - strand, within AO353_23915at 5247.510 kb on + strand, within AO353_23915at 5247.510 kb on + strand, within AO353_23915at 5247.511 kb on - strand, within AO353_23915at 5247.597 kb on + strand, within AO353_23915at 5247.598 kb on - strand, within AO353_23915at 5247.636 kb on + strand, within AO353_23915at 5247.637 kb on - strand, within AO353_23915at 5247.637 kb on - strand, within AO353_23915at 5247.637 kb on - strand, within AO353_23915at 5247.676 kb on - strand, within AO353_23915at 5247.676 kb on - strand, within AO353_23915at 5247.788 kb on - strand, within AO353_23915at 5247.806 kb on + strand, within AO353_23915at 5247.806 kb on + strand, within AO353_23915at 5247.806 kb on + strand, within AO353_23915at 5247.856 kb on - strand, within AO353_23915at 5247.856 kb on - strand, within AO353_23915at 5247.897 kb on + strand, within AO353_23915at 5247.898 kb on - strand, within AO353_23915at 5248.223 kb on - strand, within AO353_23915at 5248.255 kb on + strand, within AO353_23915at 5248.255 kb on + strand, within AO353_23915at 5248.255 kb on + strand, within AO353_23915at 5248.255 kb on + strand, within AO353_23915at 5248.256 kb on - strand, within AO353_23915at 5248.439 kb on - strand, within AO353_23915at 5248.439 kb on - strand, within AO353_23915at 5248.482 kb on + strand, within AO353_23915at 5248.505 kb on + strand, within AO353_23915at 5248.505 kb on + strand, within AO353_23915at 5248.505 kb on + strand, within AO353_23915at 5248.505 kb on + strand, within AO353_23915at 5248.505 kb on + strand, within AO353_23915at 5248.506 kb on - strand, within AO353_23915at 5248.506 kb on - strand, within AO353_23915at 5248.506 kb on - strand, within AO353_23915at 5248.506 kb on - strand, within AO353_23915at 5248.506 kb on - strandat 5248.620 kb on + strand, within AO353_23915at 5248.667 kb on + strand, within AO353_23915at 5248.696 kb on + strand, within AO353_23915at 5248.696 kb on + strand, within AO353_23915at 5248.696 kb on + strand, within AO353_23915at 5248.697 kb on - strand, within AO353_23915at 5248.699 kb on + strand, within AO353_23915at 5248.699 kb on + strand, within AO353_23915at 5248.898 kb on + strand, within AO353_23915at 5248.946 kb on + strand, within AO353_23915at 5248.946 kb on + strand, within AO353_23915at 5248.946 kb on + strand, within AO353_23915at 5248.994 kb on + strand, within AO353_23915at 5248.995 kb on - strand, within AO353_23915at 5248.995 kb on - strand, within AO353_23915at 5249.028 kb on - strand, within AO353_23915at 5249.163 kb on + strand, within AO353_23915at 5249.163 kb on + strand, within AO353_23915at 5249.163 kb on + strand, within AO353_23915at 5249.164 kb on - strand, within AO353_23915at 5249.164 kb on - strand, within AO353_23915at 5249.386 kb on - strand, within AO353_23915at 5249.500 kb on + strand, within AO353_23915at 5249.641 kb on + strand, within AO353_23915at 5249.642 kb on - strand, within AO353_23915at 5249.642 kb on - strand, within AO353_23915at 5249.642 kb on - strand, within AO353_23915at 5249.811 kb on + strand, within AO353_23915at 5249.811 kb on + strand, within AO353_23915at 5249.811 kb on + strand, within AO353_23915at 5249.811 kb on + strand, within AO353_23915at 5249.812 kb on - strand, within AO353_23915at 5249.812 kb on - strand, within AO353_23915at 5249.812 kb on - strand, within AO353_23915at 5249.812 kb on - strand, within AO353_23915at 5249.812 kb on - strand, within AO353_23915at 5249.812 kb on - strand, within AO353_23915at 5249.888 kb on + strand, within AO353_23915at 5249.889 kb on - strand, within AO353_23915at 5249.889 kb on - strand, within AO353_23915at 5249.917 kb on - strand, within AO353_23915at 5249.918 kb on + strand, within AO353_23915at 5249.928 kb on - strand, within AO353_23915at 5249.964 kb on + strand, within AO353_23915at 5250.152 kb on + strandat 5250.488 kb on + strandat 5250.488 kb on + strandat 5250.488 kb on + strandat 5250.489 kb on - strandat 5250.489 kb on - strandat 5250.489 kb on - strandat 5250.492 kb on + strandat 5250.493 kb on - strandat 5250.493 kb on - strandat 5250.493 kb on - strandat 5250.493 kb on - strandat 5250.493 kb on - strandat 5250.493 kb on - strandat 5250.506 kb on + strandat 5250.506 kb on + strandat 5250.507 kb on - strandat 5250.543 kb on + strandat 5250.552 kb on + strandat 5250.552 kb on + strandat 5250.553 kb on - strandat 5250.553 kb on - strandat 5250.553 kb on - strandat 5250.553 kb on - strandat 5250.553 kb on - strandat 5250.553 kb on - strandat 5250.559 kb on - strandat 5250.574 kb on - strandat 5250.784 kb on - strand, within AO353_23920at 5250.784 kb on - strand, within AO353_23920at 5250.784 kb on - strand, within AO353_23920at 5250.834 kb on + strand, within AO353_23920at 5250.835 kb on - strand, within AO353_23920at 5250.835 kb on - strand, within AO353_23920at 5250.963 kb on + strand, within AO353_23920at 5250.963 kb on + strand, within AO353_23920at 5250.971 kb on + strand, within AO353_23920at 5250.972 kb on - strand, within AO353_23920at 5250.972 kb on - strand, within AO353_23920at 5250.972 kb on - strand, within AO353_23920at 5250.972 kb on - strand, within AO353_23920at 5250.975 kb on + strand, within AO353_23920at 5250.975 kb on + strand, within AO353_23920at 5250.975 kb on + strand, within AO353_23920at 5250.976 kb on - strand, within AO353_23920at 5250.976 kb on - strand, within AO353_23920at 5251.012 kb on - strand, within AO353_23920at 5251.012 kb on - strand, within AO353_23920at 5251.012 kb on - strand, within AO353_23920at 5251.012 kb on - strandat 5251.012 kb on - strand, within AO353_23920at 5251.012 kb on - strand, within AO353_23920at 5251.012 kb on - strand, within AO353_23920at 5251.012 kb on - strand, within AO353_23920at 5251.014 kb on + strand, within AO353_23920at 5251.014 kb on + strand, within AO353_23920at 5251.015 kb on - strand, within AO353_23920at 5251.015 kb on - strand, within AO353_23920at 5251.015 kb on - strand, within AO353_23920at 5251.015 kb on - strand, within AO353_23920at 5251.015 kb on - strand, within AO353_23920at 5251.026 kb on + strand, within AO353_23920at 5251.254 kb on + strandat 5251.254 kb on + strandat 5251.255 kb on - strandat 5251.255 kb on - strandat 5251.297 kb on - strandat 5251.314 kb on + strandat 5251.314 kb on + strandat 5251.314 kb on + strandat 5251.315 kb on - strandat 5251.315 kb on - strandat 5251.318 kb on - strandat 5251.405 kb on + strandat 5251.405 kb on + strandat 5251.405 kb on + strandat 5251.405 kb on + strandat 5251.406 kb on - strandat 5251.406 kb on - strandat 5251.406 kb on - strandat 5251.406 kb on - strandat 5251.406 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m-Inositol (C)
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5,246,244 + AO353_23905 0.73 -0.7
5,246,245 - AO353_23905 0.73 -0.2
5,246,245 - AO353_23905 0.73 +0.2
5,246,245 - AO353_23905 0.73 -0.5
5,246,266 + AO353_23905 0.75 -0.1
5,246,266 + AO353_23905 0.75 +1.2
5,246,267 - AO353_23905 0.75 +0.2
5,246,326 + AO353_23905 0.82 +0.5
5,246,327 - AO353_23905 0.82 -2.1
5,246,452 + +0.3
5,246,452 + -0.4
5,246,494 - -1.3
5,246,575 - AO353_23910 0.25 -0.6
5,246,575 - AO353_23910 0.25 +0.6
5,246,575 - AO353_23910 0.25 +0.2
5,246,777 - AO353_23910 0.80 -0.8
5,246,777 - AO353_23910 0.80 +0.5
5,246,805 + AO353_23910 0.88 +1.2
5,246,806 - AO353_23910 0.88 -1.0
5,246,819 - +0.5
5,246,891 + +0.4
5,246,891 + -2.5
5,246,891 + -2.8
5,246,891 + -4.1
5,246,891 + -0.7
5,246,891 + +2.2
5,246,892 - +1.2
5,246,892 - +1.5
5,246,892 - -0.4
5,246,892 - -0.8
5,246,961 + -0.4
5,246,962 - +0.1
5,247,003 - +0.4
5,247,003 - -0.8
5,247,144 + -0.1
5,247,144 + -1.0
5,247,144 + -1.4
5,247,144 + +0.5
5,247,144 + -0.5
5,247,144 + -0.5
5,247,144 + +2.5
5,247,144 + +1.8
5,247,145 - +0.5
5,247,145 - +0.5
5,247,145 - +0.3
5,247,145 - +0.0
5,247,145 - +0.6
5,247,145 - -0.9
5,247,409 - AO353_23915 0.11 +0.2
5,247,510 + AO353_23915 0.14 +0.6
5,247,510 + AO353_23915 0.14 +0.6
5,247,511 - AO353_23915 0.14 +0.6
5,247,597 + AO353_23915 0.16 +0.1
5,247,598 - AO353_23915 0.16 +1.2
5,247,636 + AO353_23915 0.18 -1.1
5,247,637 - AO353_23915 0.18 +1.2
5,247,637 - AO353_23915 0.18 +1.2
5,247,637 - AO353_23915 0.18 +0.1
5,247,676 - AO353_23915 0.19 +0.5
5,247,676 - AO353_23915 0.19 +0.3
5,247,788 - AO353_23915 0.22 -0.0
5,247,806 + AO353_23915 0.22 -0.4
5,247,806 + AO353_23915 0.22 +0.3
5,247,806 + AO353_23915 0.22 +1.2
5,247,856 - AO353_23915 0.24 +0.9
5,247,856 - AO353_23915 0.24 +3.2
5,247,897 + AO353_23915 0.25 +1.5
5,247,898 - AO353_23915 0.25 -0.6
5,248,223 - AO353_23915 0.34 +0.5
5,248,255 + AO353_23915 0.35 +2.2
5,248,255 + AO353_23915 0.35 +1.2
5,248,255 + AO353_23915 0.35 +0.2
5,248,255 + AO353_23915 0.35 +1.0
5,248,256 - AO353_23915 0.35 -0.6
5,248,439 - AO353_23915 0.41 +0.5
5,248,439 - AO353_23915 0.41 -1.8
5,248,482 + AO353_23915 0.42 +0.6
5,248,505 + AO353_23915 0.43 -0.4
5,248,505 + AO353_23915 0.43 +0.6
5,248,505 + AO353_23915 0.43 +0.8
5,248,505 + AO353_23915 0.43 +0.7
5,248,505 + AO353_23915 0.43 -0.2
5,248,506 - AO353_23915 0.43 +0.8
5,248,506 - AO353_23915 0.43 +0.9
5,248,506 - AO353_23915 0.43 +1.8
5,248,506 - AO353_23915 0.43 +0.6
5,248,506 - -0.1
5,248,620 + AO353_23915 0.46 +0.5
5,248,667 + AO353_23915 0.47 +0.7
5,248,696 + AO353_23915 0.48 +0.2
5,248,696 + AO353_23915 0.48 +1.2
5,248,696 + AO353_23915 0.48 +0.9
5,248,697 - AO353_23915 0.48 -1.4
5,248,699 + AO353_23915 0.48 +0.6
5,248,699 + AO353_23915 0.48 -0.0
5,248,898 + AO353_23915 0.54 +1.5
5,248,946 + AO353_23915 0.55 -0.4
5,248,946 + AO353_23915 0.55 -1.3
5,248,946 + AO353_23915 0.55 -0.2
5,248,994 + AO353_23915 0.57 +1.0
5,248,995 - AO353_23915 0.57 +0.3
5,248,995 - AO353_23915 0.57 +0.3
5,249,028 - AO353_23915 0.58 -0.3
5,249,163 + AO353_23915 0.62 -0.4
5,249,163 + AO353_23915 0.62 +0.9
5,249,163 + AO353_23915 0.62 -0.2
5,249,164 - AO353_23915 0.62 +0.0
5,249,164 - AO353_23915 0.62 -1.5
5,249,386 - AO353_23915 0.68 +1.4
5,249,500 + AO353_23915 0.71 +0.8
5,249,641 + AO353_23915 0.75 +0.5
5,249,642 - AO353_23915 0.75 +0.3
5,249,642 - AO353_23915 0.75 +1.2
5,249,642 - AO353_23915 0.75 +1.9
5,249,811 + AO353_23915 0.80 +1.0
5,249,811 + AO353_23915 0.80 +0.2
5,249,811 + AO353_23915 0.80 -0.3
5,249,811 + AO353_23915 0.80 +1.1
5,249,812 - AO353_23915 0.80 +0.0
5,249,812 - AO353_23915 0.80 -0.6
5,249,812 - AO353_23915 0.80 -0.8
5,249,812 - AO353_23915 0.80 +0.5
5,249,812 - AO353_23915 0.80 +0.2
5,249,812 - AO353_23915 0.80 +2.4
5,249,888 + AO353_23915 0.82 +1.0
5,249,889 - AO353_23915 0.83 +0.8
5,249,889 - AO353_23915 0.83 -1.8
5,249,917 - AO353_23915 0.83 -0.1
5,249,918 + AO353_23915 0.83 +0.1
5,249,928 - AO353_23915 0.84 -0.3
5,249,964 + AO353_23915 0.85 -0.2
5,250,152 + +0.6
5,250,488 + -1.0
5,250,488 + +0.6
5,250,488 + +0.5
5,250,489 - -1.1
5,250,489 - -1.8
5,250,489 - -0.9
5,250,492 + -0.4
5,250,493 - +0.2
5,250,493 - +0.2
5,250,493 - -0.6
5,250,493 - +0.8
5,250,493 - +0.5
5,250,493 - -0.0
5,250,506 + -0.2
5,250,506 + +0.7
5,250,507 - -1.4
5,250,543 + -0.1
5,250,552 + -0.4
5,250,552 + +0.6
5,250,553 - -1.5
5,250,553 - -0.4
5,250,553 - -0.3
5,250,553 - -0.5
5,250,553 - -0.3
5,250,553 - -1.5
5,250,559 - +0.8
5,250,574 - +0.2
5,250,784 - AO353_23920 0.35 +0.1
5,250,784 - AO353_23920 0.35 -1.4
5,250,784 - AO353_23920 0.35 -2.4
5,250,834 + AO353_23920 0.41 -0.3
5,250,835 - AO353_23920 0.41 +2.2
5,250,835 - AO353_23920 0.41 -1.1
5,250,963 + AO353_23920 0.57 -0.2
5,250,963 + AO353_23920 0.57 -0.3
5,250,971 + AO353_23920 0.58 -0.2
5,250,972 - AO353_23920 0.58 +0.5
5,250,972 - AO353_23920 0.58 -0.1
5,250,972 - AO353_23920 0.58 -0.1
5,250,972 - AO353_23920 0.58 -1.5
5,250,975 + AO353_23920 0.58 +0.8
5,250,975 + AO353_23920 0.58 -0.4
5,250,975 + AO353_23920 0.58 -2.1
5,250,976 - AO353_23920 0.59 -0.3
5,250,976 - AO353_23920 0.59 +1.2
5,251,012 - AO353_23920 0.63 -0.1
5,251,012 - AO353_23920 0.63 -0.4
5,251,012 - AO353_23920 0.63 -0.4
5,251,012 - +2.2
5,251,012 - AO353_23920 0.63 +1.5
5,251,012 - AO353_23920 0.63 -1.4
5,251,012 - AO353_23920 0.63 -0.4
5,251,012 - AO353_23920 0.63 -1.1
5,251,014 + AO353_23920 0.63 -0.5
5,251,014 + AO353_23920 0.63 -0.3
5,251,015 - AO353_23920 0.63 +0.1
5,251,015 - AO353_23920 0.63 +0.6
5,251,015 - AO353_23920 0.63 -0.6
5,251,015 - AO353_23920 0.63 +0.4
5,251,015 - AO353_23920 0.63 -0.1
5,251,026 + AO353_23920 0.65 -0.0
5,251,254 + -0.1
5,251,254 + -1.0
5,251,255 - -0.2
5,251,255 - -0.4
5,251,297 - -1.4
5,251,314 + -0.4
5,251,314 + +0.2
5,251,314 + -1.3
5,251,315 - -0.4
5,251,315 - -0.7
5,251,318 - -0.8
5,251,405 + -0.5
5,251,405 + +0.2
5,251,405 + -0.3
5,251,405 + -0.4
5,251,406 - -0.3
5,251,406 - -0.8
5,251,406 - +0.2
5,251,406 - -0.6
5,251,406 - -0.2

Or see this region's nucleotide sequence