Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_23660

Experiment: m-Inositol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_23650 and AO353_23655 are separated by 158 nucleotidesAO353_23655 and AO353_23660 are separated by 452 nucleotidesAO353_23660 and AO353_23665 overlap by 4 nucleotidesAO353_23665 and AO353_23670 are separated by 4 nucleotidesAO353_23670 and AO353_23675 overlap by 4 nucleotides AO353_23650: AO353_23650 - 3-carboxymuconate cyclase, at 5,179,299 to 5,180,474 _23650 AO353_23655: AO353_23655 - hypothetical protein, at 5,180,633 to 5,180,812 _23655 AO353_23660: AO353_23660 - hypothetical protein, at 5,181,265 to 5,181,474 _23660 AO353_23665: AO353_23665 - hypothetical protein, at 5,181,471 to 5,181,728 _23665 AO353_23670: AO353_23670 - glutathione S-transferase, at 5,181,733 to 5,182,344 _23670 AO353_23675: AO353_23675 - chromosome segregation protein SMC, at 5,182,341 to 5,185,982 _23675 Position (kb) 5181 5182Strain fitness (log2 ratio) -2 -1 0 1 2at 5180.473 kb on - strandat 5180.510 kb on + strandat 5180.510 kb on + strandat 5180.510 kb on + strandat 5180.510 kb on + strandat 5180.511 kb on - strandat 5180.511 kb on - strandat 5180.511 kb on - strandat 5180.513 kb on + strandat 5180.514 kb on - strandat 5180.514 kb on - strandat 5180.572 kb on + strandat 5180.573 kb on - strandat 5180.573 kb on - strandat 5180.573 kb on - strandat 5180.573 kb on - strandat 5180.573 kb on - strandat 5180.617 kb on + strandat 5180.618 kb on - strandat 5180.618 kb on - strandat 5180.618 kb on - strandat 5180.744 kb on + strand, within AO353_23655at 5180.744 kb on + strand, within AO353_23655at 5180.745 kb on - strand, within AO353_23655at 5180.745 kb on - strand, within AO353_23655at 5180.745 kb on - strandat 5180.745 kb on - strand, within AO353_23655at 5180.745 kb on - strand, within AO353_23655at 5180.745 kb on - strand, within AO353_23655at 5180.745 kb on - strand, within AO353_23655at 5180.756 kb on + strand, within AO353_23655at 5180.756 kb on + strand, within AO353_23655at 5180.756 kb on + strand, within AO353_23655at 5180.757 kb on - strand, within AO353_23655at 5180.757 kb on - strand, within AO353_23655at 5180.780 kb on + strand, within AO353_23655at 5180.780 kb on + strand, within AO353_23655at 5180.780 kb on + strand, within AO353_23655at 5180.781 kb on - strand, within AO353_23655at 5180.781 kb on - strand, within AO353_23655at 5180.781 kb on - strand, within AO353_23655at 5180.781 kb on - strand, within AO353_23655at 5180.781 kb on - strand, within AO353_23655at 5180.833 kb on + strandat 5180.833 kb on + strandat 5180.833 kb on + strandat 5180.833 kb on + strandat 5180.833 kb on + strandat 5180.833 kb on + strandat 5180.834 kb on - strandat 5180.834 kb on - strandat 5180.907 kb on + strandat 5180.944 kb on + strandat 5180.944 kb on + strandat 5180.944 kb on + strandat 5180.945 kb on - strandat 5180.945 kb on - strandat 5180.945 kb on - strandat 5180.945 kb on - strandat 5180.945 kb on - strandat 5180.954 kb on - strandat 5181.182 kb on - strandat 5181.185 kb on + strandat 5181.185 kb on + strandat 5181.185 kb on + strandat 5181.185 kb on + strandat 5181.185 kb on + strandat 5181.185 kb on + strandat 5181.185 kb on + strandat 5181.186 kb on - strandat 5181.186 kb on - strandat 5181.186 kb on - strandat 5181.186 kb on - strandat 5181.186 kb on - strandat 5181.188 kb on + strandat 5181.188 kb on + strandat 5181.189 kb on - strandat 5181.194 kb on + strandat 5181.194 kb on + strandat 5181.195 kb on - strandat 5181.195 kb on - strandat 5181.195 kb on - strandat 5181.304 kb on + strand, within AO353_23660at 5181.305 kb on - strand, within AO353_23660at 5181.305 kb on - strand, within AO353_23660at 5181.321 kb on - strand, within AO353_23660at 5181.321 kb on - strand, within AO353_23660at 5181.322 kb on + strand, within AO353_23660at 5181.322 kb on + strand, within AO353_23660at 5181.322 kb on + strand, within AO353_23660at 5181.323 kb on - strand, within AO353_23660at 5181.323 kb on - strand, within AO353_23660at 5181.323 kb on - strand, within AO353_23660at 5181.323 kb on - strand, within AO353_23660at 5181.323 kb on - strand, within AO353_23660at 5181.323 kb on - strand, within AO353_23660at 5181.323 kb on - strand, within AO353_23660at 5181.642 kb on - strand, within AO353_23665at 5181.726 kb on + strandat 5181.727 kb on - strandat 5181.859 kb on + strand, within AO353_23670at 5181.860 kb on - strand, within AO353_23670at 5181.860 kb on - strand, within AO353_23670at 5181.911 kb on + strand, within AO353_23670at 5181.912 kb on - strand, within AO353_23670at 5181.912 kb on - strand, within AO353_23670at 5182.007 kb on + strand, within AO353_23670at 5182.007 kb on + strand, within AO353_23670at 5182.008 kb on - strand, within AO353_23670at 5182.008 kb on - strand, within AO353_23670at 5182.422 kb on + strandat 5182.422 kb on + strandat 5182.422 kb on + strandat 5182.422 kb on + strandat 5182.423 kb on - strandat 5182.423 kb on - strandat 5182.423 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m-Inositol (C)
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5,180,473 - +1.6
5,180,510 + -0.7
5,180,510 + -0.4
5,180,510 + -0.6
5,180,510 + -1.6
5,180,511 - -0.6
5,180,511 - -0.9
5,180,511 - +0.7
5,180,513 + +0.2
5,180,514 - +1.2
5,180,514 - -0.1
5,180,572 + -0.3
5,180,573 - -1.4
5,180,573 - -1.0
5,180,573 - -0.2
5,180,573 - -0.8
5,180,573 - +0.0
5,180,617 + +1.2
5,180,618 - +1.0
5,180,618 - -0.1
5,180,618 - -0.8
5,180,744 + AO353_23655 0.62 +0.7
5,180,744 + AO353_23655 0.62 -0.3
5,180,745 - AO353_23655 0.62 -1.4
5,180,745 - AO353_23655 0.62 +1.8
5,180,745 - +1.2
5,180,745 - AO353_23655 0.62 +0.0
5,180,745 - AO353_23655 0.62 -0.8
5,180,745 - AO353_23655 0.62 -0.1
5,180,745 - AO353_23655 0.62 -1.4
5,180,756 + AO353_23655 0.68 -0.1
5,180,756 + AO353_23655 0.68 +0.8
5,180,756 + AO353_23655 0.68 -2.0
5,180,757 - AO353_23655 0.69 -0.0
5,180,757 - AO353_23655 0.69 -0.4
5,180,780 + AO353_23655 0.82 +1.2
5,180,780 + AO353_23655 0.82 -0.6
5,180,780 + AO353_23655 0.82 -0.2
5,180,781 - AO353_23655 0.82 +1.8
5,180,781 - AO353_23655 0.82 -0.7
5,180,781 - AO353_23655 0.82 +0.5
5,180,781 - AO353_23655 0.82 +0.3
5,180,781 - AO353_23655 0.82 +1.2
5,180,833 + -0.6
5,180,833 + +1.5
5,180,833 + -0.0
5,180,833 + -0.5
5,180,833 + -0.6
5,180,833 + -0.2
5,180,834 - +0.2
5,180,834 - -0.2
5,180,907 + +1.2
5,180,944 + +0.2
5,180,944 + +0.4
5,180,944 + -0.1
5,180,945 - +0.7
5,180,945 - -1.6
5,180,945 - +1.2
5,180,945 - +1.2
5,180,945 - -1.3
5,180,954 - -1.6
5,181,182 - -0.8
5,181,185 + +0.3
5,181,185 + -1.4
5,181,185 + -1.1
5,181,185 + -0.4
5,181,185 + +0.7
5,181,185 + +0.4
5,181,185 + +0.4
5,181,186 - +1.0
5,181,186 - +0.7
5,181,186 - -1.2
5,181,186 - +0.4
5,181,186 - +1.2
5,181,188 + +0.5
5,181,188 + -1.6
5,181,189 - -0.7
5,181,194 + -1.1
5,181,194 + +2.2
5,181,195 - +0.5
5,181,195 - +1.2
5,181,195 - +1.6
5,181,304 + AO353_23660 0.19 +0.8
5,181,305 - AO353_23660 0.19 +1.1
5,181,305 - AO353_23660 0.19 -1.3
5,181,321 - AO353_23660 0.27 +0.4
5,181,321 - AO353_23660 0.27 +0.5
5,181,322 + AO353_23660 0.27 -0.9
5,181,322 + AO353_23660 0.27 +0.5
5,181,322 + AO353_23660 0.27 +1.2
5,181,323 - AO353_23660 0.28 -0.1
5,181,323 - AO353_23660 0.28 +0.9
5,181,323 - AO353_23660 0.28 +0.6
5,181,323 - AO353_23660 0.28 +1.2
5,181,323 - AO353_23660 0.28 -0.4
5,181,323 - AO353_23660 0.28 +0.2
5,181,323 - AO353_23660 0.28 +0.8
5,181,642 - AO353_23665 0.66 -1.1
5,181,726 + -0.9
5,181,727 - -0.4
5,181,859 + AO353_23670 0.21 -0.1
5,181,860 - AO353_23670 0.21 -0.6
5,181,860 - AO353_23670 0.21 -0.5
5,181,911 + AO353_23670 0.29 +0.3
5,181,912 - AO353_23670 0.29 +1.6
5,181,912 - AO353_23670 0.29 +0.5
5,182,007 + AO353_23670 0.45 +1.2
5,182,007 + AO353_23670 0.45 -1.4
5,182,008 - AO353_23670 0.45 +0.1
5,182,008 - AO353_23670 0.45 +0.2
5,182,422 + -0.4
5,182,422 + -0.1
5,182,422 + -2.1
5,182,422 + -0.6
5,182,423 - -1.1
5,182,423 - +0.8
5,182,423 - +0.0

Or see this region's nucleotide sequence