Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_22255

Experiment: m-Inositol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_22245 and AO353_22250 are separated by 326 nucleotidesAO353_22250 and AO353_22255 are separated by 43 nucleotidesAO353_22255 and AO353_22260 are separated by 33 nucleotidesAO353_22260 and AO353_22265 are separated by 226 nucleotides AO353_22245: AO353_22245 - transcriptional regulator, at 4,870,888 to 4,873,683 _22245 AO353_22250: AO353_22250 - NADPH-dependent FMN reductase, at 4,874,010 to 4,874,585 _22250 AO353_22255: AO353_22255 - chloroperoxidase, at 4,874,629 to 4,875,453 _22255 AO353_22260: AO353_22260 - AraC family transcriptional regulator, at 4,875,487 to 4,875,951 _22260 AO353_22265: AO353_22265 - LysR family transcriptional regulator, at 4,876,178 to 4,877,101 _22265 Position (kb) 4874 4875 4876Strain fitness (log2 ratio) -2 -1 0 1 2 3at 4873.709 kb on + strandat 4873.709 kb on + strandat 4873.710 kb on - strandat 4873.710 kb on - strandat 4873.792 kb on + strandat 4873.792 kb on + strandat 4873.792 kb on + strandat 4873.793 kb on - strandat 4873.793 kb on - strandat 4873.793 kb on - strandat 4873.827 kb on - strandat 4873.831 kb on - strandat 4873.889 kb on - strandat 4873.899 kb on - strandat 4873.899 kb on - strandat 4873.931 kb on + strandat 4873.931 kb on + strandat 4873.936 kb on + strandat 4874.031 kb on + strandat 4874.031 kb on + strandat 4874.031 kb on + strandat 4874.032 kb on - strandat 4874.032 kb on - strandat 4874.052 kb on - strandat 4874.105 kb on + strand, within AO353_22250at 4874.106 kb on - strand, within AO353_22250at 4874.106 kb on - strand, within AO353_22250at 4874.193 kb on + strand, within AO353_22250at 4874.193 kb on + strand, within AO353_22250at 4874.194 kb on - strand, within AO353_22250at 4874.194 kb on - strand, within AO353_22250at 4874.194 kb on - strandat 4874.194 kb on - strand, within AO353_22250at 4874.194 kb on - strand, within AO353_22250at 4874.237 kb on + strand, within AO353_22250at 4874.250 kb on + strand, within AO353_22250at 4874.250 kb on + strand, within AO353_22250at 4874.251 kb on - strand, within AO353_22250at 4874.251 kb on - strand, within AO353_22250at 4874.610 kb on + strandat 4874.611 kb on - strandat 4874.614 kb on + strandat 4874.614 kb on + strandat 4874.615 kb on - strandat 4874.640 kb on + strandat 4874.640 kb on + strandat 4874.640 kb on + strandat 4874.640 kb on + strandat 4874.640 kb on + strandat 4874.641 kb on - strandat 4874.641 kb on - strandat 4874.641 kb on - strandat 4874.641 kb on - strandat 4874.666 kb on - strandat 4874.666 kb on - strandat 4874.668 kb on + strandat 4874.668 kb on + strandat 4874.668 kb on + strandat 4874.753 kb on - strand, within AO353_22255at 4874.845 kb on + strand, within AO353_22255at 4874.845 kb on + strand, within AO353_22255at 4874.845 kb on + strand, within AO353_22255at 4874.846 kb on - strand, within AO353_22255at 4874.846 kb on - strand, within AO353_22255at 4874.846 kb on - strand, within AO353_22255at 4874.846 kb on - strand, within AO353_22255at 4874.931 kb on - strand, within AO353_22255at 4874.931 kb on - strand, within AO353_22255at 4874.931 kb on - strand, within AO353_22255at 4874.938 kb on + strand, within AO353_22255at 4874.939 kb on - strand, within AO353_22255at 4874.939 kb on - strand, within AO353_22255at 4874.939 kb on - strand, within AO353_22255at 4874.939 kb on - strand, within AO353_22255at 4874.939 kb on - strand, within AO353_22255at 4875.095 kb on - strand, within AO353_22255at 4875.095 kb on - strand, within AO353_22255at 4875.211 kb on + strand, within AO353_22255at 4875.212 kb on - strand, within AO353_22255at 4875.220 kb on - strand, within AO353_22255at 4875.220 kb on - strand, within AO353_22255at 4875.220 kb on - strand, within AO353_22255at 4875.285 kb on - strand, within AO353_22255at 4875.285 kb on - strand, within AO353_22255at 4875.488 kb on + strandat 4875.502 kb on + strandat 4875.502 kb on + strandat 4875.502 kb on + strandat 4875.502 kb on + strandat 4875.502 kb on + strandat 4875.502 kb on + strandat 4875.502 kb on + strandat 4875.502 kb on + strandat 4875.502 kb on + strandat 4875.502 kb on + strandat 4875.503 kb on - strandat 4875.503 kb on - strandat 4875.503 kb on - strandat 4875.503 kb on - strandat 4875.503 kb on - strandat 4875.503 kb on - strandat 4875.503 kb on - strandat 4876.034 kb on + strandat 4876.034 kb on + strandat 4876.035 kb on - strandat 4876.035 kb on - strandat 4876.035 kb on - strandat 4876.076 kb on + strandat 4876.076 kb on + strandat 4876.086 kb on + strandat 4876.086 kb on + strandat 4876.086 kb on + strandat 4876.177 kb on + strandat 4876.177 kb on + strandat 4876.177 kb on + strandat 4876.177 kb on + strandat 4876.177 kb on + strandat 4876.177 kb on + strandat 4876.177 kb on + strandat 4876.177 kb on + strandat 4876.178 kb on - strandat 4876.178 kb on - strandat 4876.178 kb on - strandat 4876.178 kb on - strandat 4876.178 kb on - strandat 4876.178 kb on - strandat 4876.178 kb on - strandat 4876.178 kb on - strandat 4876.194 kb on + strandat 4876.279 kb on + strand, within AO353_22265at 4876.279 kb on + strand, within AO353_22265at 4876.280 kb on - strand, within AO353_22265at 4876.280 kb on - strand, within AO353_22265

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Per-strain Table

Position Strand Gene LocusTag Fraction m-Inositol (C)
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4,873,709 + +0.4
4,873,709 + -0.3
4,873,710 - -0.6
4,873,710 - -1.3
4,873,792 + -0.6
4,873,792 + -1.1
4,873,792 + +0.1
4,873,793 - -1.9
4,873,793 - -0.5
4,873,793 - -0.7
4,873,827 - -1.4
4,873,831 - +0.1
4,873,889 - -0.2
4,873,899 - +0.7
4,873,899 - +0.3
4,873,931 + -0.8
4,873,931 + -1.1
4,873,936 + -0.2
4,874,031 + +0.3
4,874,031 + -0.2
4,874,031 + -0.3
4,874,032 - +1.5
4,874,032 - -0.9
4,874,052 - -1.3
4,874,105 + AO353_22250 0.16 +0.5
4,874,106 - AO353_22250 0.17 +0.3
4,874,106 - AO353_22250 0.17 -1.3
4,874,193 + AO353_22250 0.32 -0.1
4,874,193 + AO353_22250 0.32 +0.0
4,874,194 - AO353_22250 0.32 +1.0
4,874,194 - AO353_22250 0.32 -0.5
4,874,194 - +0.9
4,874,194 - AO353_22250 0.32 -1.5
4,874,194 - AO353_22250 0.32 -1.2
4,874,237 + AO353_22250 0.39 +0.6
4,874,250 + AO353_22250 0.42 +0.7
4,874,250 + AO353_22250 0.42 -1.9
4,874,251 - AO353_22250 0.42 +0.3
4,874,251 - AO353_22250 0.42 -0.4
4,874,610 + -1.2
4,874,611 - +1.3
4,874,614 + -0.5
4,874,614 + -0.4
4,874,615 - +0.5
4,874,640 + -0.1
4,874,640 + -0.3
4,874,640 + +2.9
4,874,640 + -0.3
4,874,640 + -0.7
4,874,641 - -0.1
4,874,641 - -2.1
4,874,641 - -0.1
4,874,641 - +1.7
4,874,666 - +0.8
4,874,666 - +0.3
4,874,668 + +0.7
4,874,668 + -1.1
4,874,668 + +0.3
4,874,753 - AO353_22255 0.15 +0.6
4,874,845 + AO353_22255 0.26 -0.9
4,874,845 + AO353_22255 0.26 +1.3
4,874,845 + AO353_22255 0.26 -0.1
4,874,846 - AO353_22255 0.26 -1.2
4,874,846 - AO353_22255 0.26 +1.3
4,874,846 - AO353_22255 0.26 +1.3
4,874,846 - AO353_22255 0.26 +1.8
4,874,931 - AO353_22255 0.37 +2.1
4,874,931 - AO353_22255 0.37 -0.2
4,874,931 - AO353_22255 0.37 +0.8
4,874,938 + AO353_22255 0.37 -1.3
4,874,939 - AO353_22255 0.38 +1.3
4,874,939 - AO353_22255 0.38 -0.3
4,874,939 - AO353_22255 0.38 +0.9
4,874,939 - AO353_22255 0.38 -0.3
4,874,939 - AO353_22255 0.38 -0.1
4,875,095 - AO353_22255 0.56 -0.6
4,875,095 - AO353_22255 0.56 +1.3
4,875,211 + AO353_22255 0.71 +0.3
4,875,212 - AO353_22255 0.71 -0.5
4,875,220 - AO353_22255 0.72 +1.3
4,875,220 - AO353_22255 0.72 +0.0
4,875,220 - AO353_22255 0.72 -0.2
4,875,285 - AO353_22255 0.80 +2.9
4,875,285 - AO353_22255 0.80 +1.4
4,875,488 + -0.1
4,875,502 + -0.3
4,875,502 + +1.1
4,875,502 + -0.1
4,875,502 + -0.2
4,875,502 + +0.3
4,875,502 + +0.6
4,875,502 + +1.3
4,875,502 + -1.1
4,875,502 + -1.7
4,875,502 + -0.4
4,875,503 - +0.8
4,875,503 - -1.1
4,875,503 - +0.4
4,875,503 - +0.9
4,875,503 - +0.9
4,875,503 - -1.5
4,875,503 - +0.3
4,876,034 + -0.3
4,876,034 + +0.1
4,876,035 - -0.3
4,876,035 - -1.7
4,876,035 - -0.8
4,876,076 + -1.7
4,876,076 + +0.2
4,876,086 + -0.3
4,876,086 + -0.6
4,876,086 + -0.3
4,876,177 + -0.1
4,876,177 + -0.5
4,876,177 + -1.3
4,876,177 + -0.3
4,876,177 + -0.5
4,876,177 + +0.0
4,876,177 + -0.3
4,876,177 + +1.5
4,876,178 - +0.1
4,876,178 - -1.5
4,876,178 - +0.3
4,876,178 - -1.0
4,876,178 - -0.7
4,876,178 - +0.3
4,876,178 - -0.1
4,876,178 - -1.1
4,876,194 + -1.6
4,876,279 + AO353_22265 0.11 +0.9
4,876,279 + AO353_22265 0.11 -1.0
4,876,280 - AO353_22265 0.11 +0.5
4,876,280 - AO353_22265 0.11 +1.3

Or see this region's nucleotide sequence