Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_21630

Experiment: m-Inositol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_21620 and AO353_21625 are separated by 111 nucleotidesAO353_21625 and AO353_21630 are separated by 168 nucleotidesAO353_21630 and AO353_21635 are separated by 81 nucleotidesAO353_21635 and AO353_21640 overlap by 4 nucleotides AO353_21620: AO353_21620 - peptidylprolyl isomerase, at 4,740,215 to 4,742,506 _21620 AO353_21625: AO353_21625 - Fe/S biogenesis protein NfuA, at 4,742,618 to 4,743,202 _21625 AO353_21630: AO353_21630 - precorrin-4 C11-methyltransferase, at 4,743,371 to 4,744,117 _21630 AO353_21635: AO353_21635 - cobalamin biosynthesis protein CobE, at 4,744,199 to 4,744,612 _21635 AO353_21640: AO353_21640 - cobalt transporter, at 4,744,609 to 4,745,310 _21640 Position (kb) 4743 4744 4745Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 4742.420 kb on + strandat 4742.433 kb on + strandat 4742.434 kb on - strandat 4742.434 kb on - strandat 4742.434 kb on - strandat 4742.434 kb on - strandat 4742.434 kb on - strandat 4742.441 kb on + strandat 4742.441 kb on + strandat 4742.441 kb on + strandat 4742.442 kb on - strandat 4742.442 kb on - strandat 4742.443 kb on + strandat 4742.443 kb on + strandat 4742.443 kb on + strandat 4742.475 kb on + strandat 4742.475 kb on + strandat 4742.476 kb on - strandat 4742.587 kb on + strandat 4742.587 kb on + strandat 4742.588 kb on - strandat 4742.588 kb on - strandat 4742.588 kb on - strandat 4742.629 kb on + strandat 4742.632 kb on + strandat 4742.632 kb on + strandat 4742.632 kb on + strandat 4742.632 kb on + strandat 4742.655 kb on - strandat 4742.732 kb on + strand, within AO353_21625at 4742.817 kb on - strand, within AO353_21625at 4742.963 kb on + strand, within AO353_21625at 4742.963 kb on + strand, within AO353_21625at 4742.966 kb on + strand, within AO353_21625at 4742.967 kb on - strand, within AO353_21625at 4743.194 kb on + strandat 4743.195 kb on - strandat 4743.195 kb on - strandat 4743.197 kb on + strandat 4743.197 kb on + strandat 4743.197 kb on + strandat 4743.197 kb on + strandat 4743.197 kb on + strandat 4743.197 kb on + strandat 4743.197 kb on + strandat 4743.197 kb on + strandat 4743.198 kb on - strandat 4743.198 kb on - strandat 4743.198 kb on - strandat 4743.198 kb on - strandat 4743.200 kb on + strandat 4743.200 kb on + strandat 4743.200 kb on + strandat 4743.200 kb on + strandat 4743.200 kb on + strandat 4743.201 kb on - strandat 4743.201 kb on - strandat 4743.201 kb on - strandat 4743.201 kb on - strandat 4743.201 kb on - strandat 4743.201 kb on - strandat 4743.201 kb on - strandat 4743.201 kb on - strandat 4743.201 kb on - strandat 4743.201 kb on - strandat 4743.201 kb on - strandat 4743.201 kb on - strandat 4743.381 kb on + strandat 4743.467 kb on - strand, within AO353_21630at 4743.996 kb on - strand, within AO353_21630at 4744.008 kb on - strand, within AO353_21630at 4744.008 kb on - strand, within AO353_21630at 4744.023 kb on + strand, within AO353_21630at 4744.023 kb on + strand, within AO353_21630at 4744.107 kb on + strandat 4744.107 kb on + strandat 4744.107 kb on + strandat 4744.108 kb on - strandat 4744.108 kb on - strandat 4744.236 kb on + strandat 4744.237 kb on - strandat 4744.320 kb on + strand, within AO353_21635at 4744.374 kb on + strand, within AO353_21635at 4744.493 kb on + strand, within AO353_21635at 4744.493 kb on + strandat 4744.493 kb on + strand, within AO353_21635at 4744.494 kb on - strand, within AO353_21635at 4744.494 kb on - strand, within AO353_21635at 4745.073 kb on + strand, within AO353_21640

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Per-strain Table

Position Strand Gene LocusTag Fraction m-Inositol (C)
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4,742,420 + -1.1
4,742,433 + +0.2
4,742,434 - -0.1
4,742,434 - -0.3
4,742,434 - +0.5
4,742,434 - +1.1
4,742,434 - +0.1
4,742,441 + +0.4
4,742,441 + +0.9
4,742,441 + +0.8
4,742,442 - -0.1
4,742,442 - +0.1
4,742,443 + -1.2
4,742,443 + +0.2
4,742,443 + -0.4
4,742,475 + -0.1
4,742,475 + +0.2
4,742,476 - +0.3
4,742,587 + -0.5
4,742,587 + +0.6
4,742,588 - +0.6
4,742,588 - +0.6
4,742,588 - +0.6
4,742,629 + +1.3
4,742,632 + +0.6
4,742,632 + +0.5
4,742,632 + +0.3
4,742,632 + +0.3
4,742,655 - +0.6
4,742,732 + AO353_21625 0.19 -0.1
4,742,817 - AO353_21625 0.34 -1.0
4,742,963 + AO353_21625 0.59 +0.3
4,742,963 + AO353_21625 0.59 +2.5
4,742,966 + AO353_21625 0.59 -0.8
4,742,967 - AO353_21625 0.60 +0.7
4,743,194 + -0.6
4,743,195 - +1.1
4,743,195 - -1.0
4,743,197 + -0.4
4,743,197 + +0.3
4,743,197 + +1.1
4,743,197 + -0.5
4,743,197 + +0.4
4,743,197 + +0.3
4,743,197 + -0.2
4,743,197 + -0.6
4,743,198 - +0.0
4,743,198 - +0.6
4,743,198 - +2.8
4,743,198 - +1.3
4,743,200 + -0.9
4,743,200 + +0.8
4,743,200 + -0.9
4,743,200 + -0.0
4,743,200 + -1.3
4,743,201 - +0.3
4,743,201 - -0.1
4,743,201 - -0.6
4,743,201 - +0.3
4,743,201 - -1.9
4,743,201 - +1.1
4,743,201 - -0.7
4,743,201 - -0.5
4,743,201 - -0.7
4,743,201 - -0.6
4,743,201 - +0.4
4,743,201 - +1.3
4,743,381 + -0.3
4,743,467 - AO353_21630 0.13 -1.5
4,743,996 - AO353_21630 0.84 +0.5
4,744,008 - AO353_21630 0.85 -2.6
4,744,008 - AO353_21630 0.85 -3.2
4,744,023 + AO353_21630 0.87 -1.4
4,744,023 + AO353_21630 0.87 +0.9
4,744,107 + +0.3
4,744,107 + +0.9
4,744,107 + +0.5
4,744,108 - +0.6
4,744,108 - -0.7
4,744,236 + -0.0
4,744,237 - +0.6
4,744,320 + AO353_21635 0.29 -1.1
4,744,374 + AO353_21635 0.42 -0.0
4,744,493 + AO353_21635 0.71 -0.8
4,744,493 + +1.3
4,744,493 + AO353_21635 0.71 -0.4
4,744,494 - AO353_21635 0.71 +0.7
4,744,494 - AO353_21635 0.71 -0.9
4,745,073 + AO353_21640 0.66 -0.4

Or see this region's nucleotide sequence