Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_21390

Experiment: m-Inositol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_21385 and AO353_21390 are separated by 176 nucleotidesAO353_21390 and AO353_21395 are separated by 165 nucleotides AO353_21385: AO353_21385 - m-Inositol ABC transporter, ATPase component (itaA) (from data), at 4,682,065 to 4,683,630 _21385 AO353_21390: AO353_21390 - m-Inositol ABC transporter, permease component (iatP) (from data), at 4,683,807 to 4,684,829 _21390 AO353_21395: AO353_21395 - porin, at 4,684,995 to 4,686,344 _21395 Position (kb) 4683 4684 4685Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 4683.084 kb on - strand, within AO353_21385at 4683.087 kb on + strand, within AO353_21385at 4683.087 kb on + strand, within AO353_21385at 4683.088 kb on - strand, within AO353_21385at 4683.088 kb on - strand, within AO353_21385at 4683.229 kb on - strand, within AO353_21385at 4683.316 kb on - strand, within AO353_21385at 4683.436 kb on + strand, within AO353_21385at 4683.437 kb on - strand, within AO353_21385at 4683.451 kb on + strand, within AO353_21385at 4683.452 kb on - strand, within AO353_21385at 4683.452 kb on - strand, within AO353_21385at 4683.620 kb on + strandat 4683.620 kb on + strandat 4683.620 kb on + strandat 4683.621 kb on - strandat 4683.628 kb on + strandat 4683.628 kb on + strandat 4683.628 kb on + strandat 4683.628 kb on + strandat 4683.629 kb on - strandat 4683.629 kb on - strandat 4683.629 kb on - strandat 4683.629 kb on - strandat 4683.629 kb on - strandat 4683.629 kb on - strandat 4683.629 kb on - strandat 4683.629 kb on - strandat 4683.706 kb on + strandat 4683.706 kb on + strandat 4683.709 kb on - strandat 4683.709 kb on - strandat 4683.709 kb on - strandat 4683.713 kb on + strandat 4683.713 kb on + strandat 4683.714 kb on - strandat 4683.714 kb on - strandat 4683.714 kb on - strandat 4683.714 kb on - strandat 4683.770 kb on + strandat 4683.771 kb on - strandat 4683.806 kb on + strandat 4683.881 kb on + strandat 4683.882 kb on - strandat 4683.882 kb on - strandat 4684.299 kb on + strand, within AO353_21390at 4684.299 kb on + strand, within AO353_21390at 4684.302 kb on + strand, within AO353_21390at 4684.302 kb on + strand, within AO353_21390at 4684.303 kb on - strand, within AO353_21390at 4684.341 kb on + strand, within AO353_21390at 4684.341 kb on + strand, within AO353_21390at 4684.341 kb on + strand, within AO353_21390at 4684.341 kb on + strand, within AO353_21390at 4684.342 kb on - strand, within AO353_21390at 4684.342 kb on - strand, within AO353_21390at 4684.419 kb on + strand, within AO353_21390at 4684.428 kb on + strand, within AO353_21390at 4684.428 kb on + strand, within AO353_21390at 4684.428 kb on + strand, within AO353_21390at 4684.428 kb on + strand, within AO353_21390at 4684.429 kb on - strand, within AO353_21390at 4684.429 kb on - strand, within AO353_21390at 4684.434 kb on - strand, within AO353_21390at 4684.434 kb on - strand, within AO353_21390at 4684.434 kb on - strand, within AO353_21390at 4684.437 kb on + strand, within AO353_21390at 4684.437 kb on + strand, within AO353_21390at 4684.437 kb on + strand, within AO353_21390at 4684.437 kb on + strand, within AO353_21390at 4684.437 kb on + strand, within AO353_21390at 4684.437 kb on + strand, within AO353_21390at 4684.437 kb on + strand, within AO353_21390at 4684.437 kb on + strand, within AO353_21390at 4684.437 kb on + strand, within AO353_21390at 4684.437 kb on + strand, within AO353_21390at 4684.438 kb on - strand, within AO353_21390at 4684.438 kb on - strand, within AO353_21390at 4684.438 kb on - strand, within AO353_21390at 4684.438 kb on - strand, within AO353_21390at 4684.438 kb on - strand, within AO353_21390at 4684.438 kb on - strand, within AO353_21390at 4684.438 kb on - strand, within AO353_21390at 4684.438 kb on - strand, within AO353_21390at 4684.438 kb on - strand, within AO353_21390at 4684.438 kb on - strand, within AO353_21390at 4684.443 kb on + strand, within AO353_21390at 4684.443 kb on + strand, within AO353_21390at 4684.443 kb on + strand, within AO353_21390at 4684.444 kb on - strand, within AO353_21390at 4684.444 kb on - strand, within AO353_21390at 4684.515 kb on + strand, within AO353_21390at 4684.602 kb on + strand, within AO353_21390at 4684.602 kb on + strand, within AO353_21390at 4684.602 kb on + strand, within AO353_21390at 4684.602 kb on + strand, within AO353_21390at 4684.603 kb on - strand, within AO353_21390at 4684.603 kb on - strand, within AO353_21390at 4684.603 kb on - strand, within AO353_21390at 4684.603 kb on - strand, within AO353_21390at 4684.603 kb on - strand, within AO353_21390at 4684.743 kb on + strandat 4684.743 kb on + strandat 4684.743 kb on + strandat 4684.743 kb on + strandat 4684.744 kb on - strandat 4684.846 kb on - strandat 4684.846 kb on - strandat 4684.891 kb on + strandat 4684.901 kb on + strandat 4684.929 kb on + strandat 4684.929 kb on + strandat 4684.929 kb on + strandat 4684.930 kb on - strandat 4684.930 kb on - strandat 4684.949 kb on + strandat 4684.949 kb on + strandat 4684.950 kb on - strandat 4684.950 kb on - strandat 4684.950 kb on - strandat 4684.950 kb on - strandat 4684.950 kb on - strandat 4684.950 kb on - strandat 4684.973 kb on - strandat 4684.978 kb on + strandat 4684.978 kb on + strandat 4684.978 kb on + strandat 4684.979 kb on - strandat 4685.002 kb on + strandat 4685.019 kb on + strandat 4685.019 kb on + strandat 4685.019 kb on + strandat 4685.020 kb on - strandat 4685.020 kb on - strandat 4685.155 kb on - strand, within AO353_21395at 4685.209 kb on - strand, within AO353_21395at 4685.209 kb on - strand, within AO353_21395at 4685.209 kb on - strand, within AO353_21395at 4685.376 kb on + strand, within AO353_21395at 4685.377 kb on - strand, within AO353_21395at 4685.377 kb on - strand, within AO353_21395at 4685.397 kb on + strand, within AO353_21395at 4685.583 kb on + strand, within AO353_21395at 4685.583 kb on + strand, within AO353_21395at 4685.584 kb on - strand, within AO353_21395at 4685.584 kb on - strand, within AO353_21395at 4685.622 kb on + strand, within AO353_21395at 4685.622 kb on + strand, within AO353_21395at 4685.622 kb on + strand, within AO353_21395at 4685.622 kb on + strand, within AO353_21395at 4685.622 kb on + strand, within AO353_21395at 4685.622 kb on + strand, within AO353_21395at 4685.622 kb on + strand, within AO353_21395at 4685.623 kb on - strand, within AO353_21395at 4685.623 kb on - strand, within AO353_21395at 4685.641 kb on + strand, within AO353_21395at 4685.641 kb on + strand, within AO353_21395at 4685.642 kb on - strand, within AO353_21395at 4685.642 kb on - strand, within AO353_21395at 4685.642 kb on - strand, within AO353_21395at 4685.642 kb on - strand, within AO353_21395at 4685.661 kb on + strand, within AO353_21395at 4685.661 kb on + strand, within AO353_21395at 4685.661 kb on + strand, within AO353_21395at 4685.661 kb on + strand, within AO353_21395at 4685.661 kb on + strand, within AO353_21395at 4685.662 kb on - strand, within AO353_21395at 4685.662 kb on - strand, within AO353_21395at 4685.734 kb on + strand, within AO353_21395at 4685.735 kb on - strand, within AO353_21395at 4685.802 kb on + strand, within AO353_21395at 4685.802 kb on + strandat 4685.802 kb on + strand, within AO353_21395at 4685.802 kb on + strand, within AO353_21395at 4685.802 kb on + strand, within AO353_21395at 4685.802 kb on + strand, within AO353_21395at 4685.803 kb on - strand, within AO353_21395at 4685.803 kb on - strand, within AO353_21395at 4685.803 kb on - strand, within AO353_21395at 4685.803 kb on - strand, within AO353_21395at 4685.803 kb on - strand, within AO353_21395at 4685.803 kb on - strand, within AO353_21395at 4685.803 kb on - strand, within AO353_21395at 4685.805 kb on + strand, within AO353_21395at 4685.805 kb on + strand, within AO353_21395at 4685.805 kb on + strand, within AO353_21395at 4685.805 kb on + strand, within AO353_21395at 4685.805 kb on + strand, within AO353_21395at 4685.806 kb on - strand, within AO353_21395at 4685.806 kb on - strand, within AO353_21395at 4685.806 kb on - strand, within AO353_21395at 4685.806 kb on - strand, within AO353_21395at 4685.806 kb on - strand, within AO353_21395at 4685.806 kb on - strand, within AO353_21395at 4685.806 kb on - strand, within AO353_21395

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Per-strain Table

Position Strand Gene LocusTag Fraction m-Inositol (C)
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4,683,084 - AO353_21385 0.65 -1.5
4,683,087 + AO353_21385 0.65 -2.6
4,683,087 + AO353_21385 0.65 -2.6
4,683,088 - AO353_21385 0.65 -2.6
4,683,088 - AO353_21385 0.65 -2.3
4,683,229 - AO353_21385 0.74 -1.3
4,683,316 - AO353_21385 0.80 -1.5
4,683,436 + AO353_21385 0.88 +0.3
4,683,437 - AO353_21385 0.88 -1.5
4,683,451 + AO353_21385 0.89 -3.3
4,683,452 - AO353_21385 0.89 -1.4
4,683,452 - AO353_21385 0.89 -1.3
4,683,620 + -3.7
4,683,620 + -1.7
4,683,620 + -1.7
4,683,621 - -0.3
4,683,628 + -1.9
4,683,628 + -2.5
4,683,628 + -2.3
4,683,628 + -2.6
4,683,629 - -2.8
4,683,629 - -1.3
4,683,629 - -1.8
4,683,629 - -2.0
4,683,629 - -3.6
4,683,629 - -0.3
4,683,629 - -2.7
4,683,629 - -0.7
4,683,706 + -2.1
4,683,706 + -2.6
4,683,709 - -2.0
4,683,709 - -2.1
4,683,709 - -0.8
4,683,713 + -1.7
4,683,713 + -2.1
4,683,714 - -2.0
4,683,714 - -1.5
4,683,714 - -1.3
4,683,714 - -2.7
4,683,770 + -1.7
4,683,771 - -2.5
4,683,806 + -3.2
4,683,881 + -1.5
4,683,882 - -4.1
4,683,882 - -2.8
4,684,299 + AO353_21390 0.48 -2.1
4,684,299 + AO353_21390 0.48 -2.1
4,684,302 + AO353_21390 0.48 -2.8
4,684,302 + AO353_21390 0.48 -0.7
4,684,303 - AO353_21390 0.48 -2.7
4,684,341 + AO353_21390 0.52 -1.4
4,684,341 + AO353_21390 0.52 -1.3
4,684,341 + AO353_21390 0.52 -0.1
4,684,341 + AO353_21390 0.52 -1.7
4,684,342 - AO353_21390 0.52 -2.6
4,684,342 - AO353_21390 0.52 -2.3
4,684,419 + AO353_21390 0.60 -1.0
4,684,428 + AO353_21390 0.61 -1.3
4,684,428 + AO353_21390 0.61 +1.3
4,684,428 + AO353_21390 0.61 -1.0
4,684,428 + AO353_21390 0.61 -0.3
4,684,429 - AO353_21390 0.61 -2.1
4,684,429 - AO353_21390 0.61 +0.3
4,684,434 - AO353_21390 0.61 -1.5
4,684,434 - AO353_21390 0.61 -2.0
4,684,434 - AO353_21390 0.61 -1.3
4,684,437 + AO353_21390 0.62 -2.4
4,684,437 + AO353_21390 0.62 -0.1
4,684,437 + AO353_21390 0.62 -2.1
4,684,437 + AO353_21390 0.62 -1.5
4,684,437 + AO353_21390 0.62 -1.5
4,684,437 + AO353_21390 0.62 -1.4
4,684,437 + AO353_21390 0.62 -2.0
4,684,437 + AO353_21390 0.62 -1.0
4,684,437 + AO353_21390 0.62 -1.0
4,684,437 + AO353_21390 0.62 -0.4
4,684,438 - AO353_21390 0.62 -2.6
4,684,438 - AO353_21390 0.62 -1.4
4,684,438 - AO353_21390 0.62 -2.8
4,684,438 - AO353_21390 0.62 -1.0
4,684,438 - AO353_21390 0.62 -1.3
4,684,438 - AO353_21390 0.62 -1.0
4,684,438 - AO353_21390 0.62 -3.7
4,684,438 - AO353_21390 0.62 -1.0
4,684,438 - AO353_21390 0.62 -1.8
4,684,438 - AO353_21390 0.62 -0.7
4,684,443 + AO353_21390 0.62 -1.5
4,684,443 + AO353_21390 0.62 -3.5
4,684,443 + AO353_21390 0.62 +0.3
4,684,444 - AO353_21390 0.62 -3.3
4,684,444 - AO353_21390 0.62 -1.5
4,684,515 + AO353_21390 0.69 -2.3
4,684,602 + AO353_21390 0.78 -1.8
4,684,602 + AO353_21390 0.78 -1.3
4,684,602 + AO353_21390 0.78 -1.3
4,684,602 + AO353_21390 0.78 -1.5
4,684,603 - AO353_21390 0.78 -2.1
4,684,603 - AO353_21390 0.78 -2.9
4,684,603 - AO353_21390 0.78 -2.7
4,684,603 - AO353_21390 0.78 -3.3
4,684,603 - AO353_21390 0.78 -1.7
4,684,743 + -1.3
4,684,743 + -2.8
4,684,743 + -1.8
4,684,743 + -2.8
4,684,744 - -0.7
4,684,846 - -0.7
4,684,846 - -1.0
4,684,891 + -1.8
4,684,901 + -0.3
4,684,929 + +0.7
4,684,929 + +0.3
4,684,929 + +2.1
4,684,930 - -1.0
4,684,930 - -1.5
4,684,949 + +0.5
4,684,949 + +0.7
4,684,950 - -0.7
4,684,950 - -1.5
4,684,950 - -0.9
4,684,950 - -2.6
4,684,950 - +0.6
4,684,950 - +1.5
4,684,973 - -2.1
4,684,978 + +0.0
4,684,978 + +0.7
4,684,978 + -1.5
4,684,979 - -0.1
4,685,002 + +0.8
4,685,019 + +0.5
4,685,019 + +0.2
4,685,019 + +0.0
4,685,020 - +0.3
4,685,020 - -0.5
4,685,155 - AO353_21395 0.12 -0.5
4,685,209 - AO353_21395 0.16 -0.4
4,685,209 - AO353_21395 0.16 +0.3
4,685,209 - AO353_21395 0.16 +0.3
4,685,376 + AO353_21395 0.28 -0.3
4,685,377 - AO353_21395 0.28 +1.0
4,685,377 - AO353_21395 0.28 +0.3
4,685,397 + AO353_21395 0.30 -1.0
4,685,583 + AO353_21395 0.44 +1.3
4,685,583 + AO353_21395 0.44 -1.1
4,685,584 - AO353_21395 0.44 +0.3
4,685,584 - AO353_21395 0.44 +0.7
4,685,622 + AO353_21395 0.46 +0.6
4,685,622 + AO353_21395 0.46 +0.4
4,685,622 + AO353_21395 0.46 -2.1
4,685,622 + AO353_21395 0.46 -0.1
4,685,622 + AO353_21395 0.46 -1.1
4,685,622 + AO353_21395 0.46 -1.4
4,685,622 + AO353_21395 0.46 -1.7
4,685,623 - AO353_21395 0.47 +0.5
4,685,623 - AO353_21395 0.47 +0.7
4,685,641 + AO353_21395 0.48 -0.3
4,685,641 + AO353_21395 0.48 +0.7
4,685,642 - AO353_21395 0.48 -0.4
4,685,642 - AO353_21395 0.48 -0.3
4,685,642 - AO353_21395 0.48 +0.9
4,685,642 - AO353_21395 0.48 -0.1
4,685,661 + AO353_21395 0.49 +0.7
4,685,661 + AO353_21395 0.49 +0.6
4,685,661 + AO353_21395 0.49 +0.7
4,685,661 + AO353_21395 0.49 -0.3
4,685,661 + AO353_21395 0.49 -0.1
4,685,662 - AO353_21395 0.49 +0.2
4,685,662 - AO353_21395 0.49 +0.0
4,685,734 + AO353_21395 0.55 -0.5
4,685,735 - AO353_21395 0.55 +0.0
4,685,802 + AO353_21395 0.60 +0.3
4,685,802 + +0.3
4,685,802 + AO353_21395 0.60 -1.8
4,685,802 + AO353_21395 0.60 +0.6
4,685,802 + AO353_21395 0.60 -2.3
4,685,802 + AO353_21395 0.60 -0.7
4,685,803 - AO353_21395 0.60 +0.5
4,685,803 - AO353_21395 0.60 +0.6
4,685,803 - AO353_21395 0.60 +1.1
4,685,803 - AO353_21395 0.60 +0.8
4,685,803 - AO353_21395 0.60 -0.1
4,685,803 - AO353_21395 0.60 -1.3
4,685,803 - AO353_21395 0.60 -1.4
4,685,805 + AO353_21395 0.60 +0.2
4,685,805 + AO353_21395 0.60 +0.0
4,685,805 + AO353_21395 0.60 -0.3
4,685,805 + AO353_21395 0.60 -1.1
4,685,805 + AO353_21395 0.60 +0.6
4,685,806 - AO353_21395 0.60 -0.1
4,685,806 - AO353_21395 0.60 -0.5
4,685,806 - AO353_21395 0.60 -0.4
4,685,806 - AO353_21395 0.60 -0.5
4,685,806 - AO353_21395 0.60 +0.2
4,685,806 - AO353_21395 0.60 +0.0
4,685,806 - AO353_21395 0.60 +0.8

Or see this region's nucleotide sequence