Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_21290

Experiment: m-Inositol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_21280 and AO353_21285 are separated by 13 nucleotidesAO353_21285 and AO353_21290 are separated by 368 nucleotidesAO353_21290 and AO353_21295 are separated by 847 nucleotides AO353_21280: AO353_21280 - metallophosphoesterase, at 4,656,596 to 4,657,567 _21280 AO353_21285: AO353_21285 - amidase, at 4,657,581 to 4,657,901 _21285 AO353_21290: AO353_21290 - hypothetical protein, at 4,658,270 to 4,658,539 _21290 AO353_21295: AO353_21295 - hypothetical protein, at 4,659,387 to 4,660,784 _21295 Position (kb) 4658 4659Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 4657.328 kb on + strand, within AO353_21280at 4657.328 kb on + strand, within AO353_21280at 4657.329 kb on - strand, within AO353_21280at 4657.329 kb on - strand, within AO353_21280at 4657.357 kb on + strand, within AO353_21280at 4657.422 kb on - strand, within AO353_21280at 4657.493 kb on + strandat 4657.493 kb on + strandat 4657.493 kb on + strandat 4657.493 kb on + strandat 4657.494 kb on - strandat 4657.494 kb on - strandat 4657.494 kb on - strandat 4657.494 kb on - strandat 4657.592 kb on - strandat 4657.748 kb on + strand, within AO353_21285at 4657.755 kb on - strand, within AO353_21285at 4657.793 kb on + strand, within AO353_21285at 4657.793 kb on + strand, within AO353_21285at 4657.812 kb on + strand, within AO353_21285at 4657.823 kb on + strand, within AO353_21285at 4657.842 kb on + strand, within AO353_21285at 4657.842 kb on + strand, within AO353_21285at 4657.842 kb on + strand, within AO353_21285at 4657.842 kb on + strand, within AO353_21285at 4657.843 kb on - strand, within AO353_21285at 4657.843 kb on - strand, within AO353_21285at 4657.843 kb on - strand, within AO353_21285at 4657.845 kb on + strand, within AO353_21285at 4657.845 kb on + strand, within AO353_21285at 4657.845 kb on + strand, within AO353_21285at 4657.845 kb on + strand, within AO353_21285at 4657.845 kb on + strand, within AO353_21285at 4657.845 kb on + strand, within AO353_21285at 4657.845 kb on + strand, within AO353_21285at 4657.846 kb on - strand, within AO353_21285at 4657.846 kb on - strand, within AO353_21285at 4657.846 kb on - strand, within AO353_21285at 4657.916 kb on + strandat 4657.917 kb on - strandat 4657.917 kb on - strandat 4657.994 kb on + strandat 4657.995 kb on - strandat 4657.995 kb on - strandat 4657.995 kb on - strandat 4657.995 kb on - strandat 4657.995 kb on - strandat 4657.995 kb on - strandat 4657.999 kb on + strandat 4658.000 kb on - strandat 4658.000 kb on - strandat 4658.000 kb on - strandat 4658.000 kb on - strandat 4658.000 kb on - strandat 4658.000 kb on - strandat 4658.124 kb on + strandat 4658.202 kb on + strandat 4658.202 kb on + strandat 4658.203 kb on - strandat 4658.203 kb on - strandat 4658.207 kb on + strandat 4658.207 kb on + strandat 4658.207 kb on + strandat 4658.207 kb on + strandat 4658.207 kb on + strandat 4658.208 kb on - strandat 4658.231 kb on + strandat 4658.231 kb on + strandat 4658.231 kb on + strandat 4658.231 kb on + strandat 4658.232 kb on - strandat 4658.232 kb on - strandat 4658.232 kb on - strandat 4658.232 kb on - strandat 4658.497 kb on + strand, within AO353_21290at 4658.497 kb on + strand, within AO353_21290at 4658.497 kb on + strand, within AO353_21290at 4658.497 kb on + strand, within AO353_21290at 4658.498 kb on - strand, within AO353_21290at 4658.498 kb on - strand, within AO353_21290at 4658.498 kb on - strand, within AO353_21290at 4658.498 kb on - strand, within AO353_21290at 4658.498 kb on - strand, within AO353_21290at 4658.604 kb on + strandat 4658.755 kb on - strandat 4658.766 kb on + strandat 4658.767 kb on - strandat 4658.767 kb on - strandat 4658.839 kb on + strandat 4658.840 kb on - strandat 4658.851 kb on + strandat 4658.851 kb on + strandat 4658.851 kb on + strandat 4658.886 kb on - strandat 4658.887 kb on + strandat 4658.888 kb on - strandat 4658.888 kb on - strandat 4658.896 kb on + strandat 4658.896 kb on + strandat 4658.896 kb on + strandat 4658.896 kb on + strandat 4658.897 kb on - strandat 4658.897 kb on - strandat 4658.914 kb on + strandat 4658.914 kb on + strandat 4658.922 kb on + strandat 4658.922 kb on + strandat 4658.922 kb on + strandat 4658.922 kb on + strandat 4658.922 kb on + strandat 4658.922 kb on + strandat 4658.922 kb on + strandat 4658.922 kb on + strandat 4658.923 kb on - strandat 4658.923 kb on - strandat 4658.923 kb on - strandat 4658.923 kb on - strandat 4658.923 kb on - strandat 4658.923 kb on - strandat 4658.992 kb on - strandat 4658.992 kb on - strandat 4659.035 kb on + strandat 4659.035 kb on + strandat 4659.071 kb on - strandat 4659.123 kb on + strandat 4659.124 kb on - strandat 4659.124 kb on - strandat 4659.140 kb on + strandat 4659.140 kb on + strandat 4659.140 kb on + strandat 4659.140 kb on + strandat 4659.141 kb on - strandat 4659.141 kb on - strandat 4659.141 kb on - strandat 4659.141 kb on - strandat 4659.141 kb on - strandat 4659.145 kb on + strandat 4659.145 kb on + strandat 4659.145 kb on + strandat 4659.145 kb on + strandat 4659.145 kb on + strandat 4659.146 kb on - strandat 4659.146 kb on - strandat 4659.146 kb on - strandat 4659.146 kb on - strandat 4659.148 kb on + strandat 4659.148 kb on + strandat 4659.193 kb on + strandat 4659.194 kb on - strandat 4659.194 kb on - strandat 4659.204 kb on + strandat 4659.204 kb on + strandat 4659.205 kb on - strandat 4659.205 kb on - strandat 4659.263 kb on + strandat 4659.263 kb on + strandat 4659.263 kb on + strandat 4659.264 kb on - strandat 4659.264 kb on - strandat 4659.264 kb on - strandat 4659.265 kb on + strandat 4659.265 kb on + strandat 4659.265 kb on + strandat 4659.265 kb on + strandat 4659.265 kb on + strandat 4659.265 kb on + strandat 4659.265 kb on + strandat 4659.265 kb on + strandat 4659.265 kb on + strandat 4659.265 kb on + strandat 4659.265 kb on + strandat 4659.265 kb on + strandat 4659.265 kb on + strandat 4659.266 kb on - strandat 4659.266 kb on - strandat 4659.266 kb on - strandat 4659.266 kb on - strandat 4659.266 kb on - strandat 4659.297 kb on + strandat 4659.297 kb on + strandat 4659.297 kb on + strandat 4659.298 kb on - strandat 4659.298 kb on - strandat 4659.318 kb on + strandat 4659.318 kb on + strandat 4659.318 kb on + strandat 4659.319 kb on - strandat 4659.319 kb on - strandat 4659.407 kb on + strandat 4659.407 kb on + strandat 4659.408 kb on - strandat 4659.454 kb on + strandat 4659.454 kb on + strandat 4659.454 kb on + strandat 4659.454 kb on + strandat 4659.454 kb on + strandat 4659.454 kb on + strandat 4659.454 kb on + strandat 4659.455 kb on - strandat 4659.455 kb on - strandat 4659.455 kb on - strandat 4659.455 kb on - strandat 4659.473 kb on + strandat 4659.474 kb on - strandat 4659.474 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m-Inositol (C)
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4,657,328 + AO353_21280 0.75 +0.3
4,657,328 + AO353_21280 0.75 -0.2
4,657,329 - AO353_21280 0.75 +0.1
4,657,329 - AO353_21280 0.75 -0.2
4,657,357 + AO353_21280 0.78 +0.6
4,657,422 - AO353_21280 0.85 -1.5
4,657,493 + -2.0
4,657,493 + +0.1
4,657,493 + -1.6
4,657,493 + -0.0
4,657,494 - +0.9
4,657,494 - -0.7
4,657,494 - -0.8
4,657,494 - -0.2
4,657,592 - -0.7
4,657,748 + AO353_21285 0.52 -0.2
4,657,755 - AO353_21285 0.54 -1.0
4,657,793 + AO353_21285 0.66 +0.3
4,657,793 + AO353_21285 0.66 +0.7
4,657,812 + AO353_21285 0.72 -0.9
4,657,823 + AO353_21285 0.75 -0.2
4,657,842 + AO353_21285 0.81 -0.7
4,657,842 + AO353_21285 0.81 +0.3
4,657,842 + AO353_21285 0.81 -0.7
4,657,842 + AO353_21285 0.81 +0.9
4,657,843 - AO353_21285 0.82 -1.0
4,657,843 - AO353_21285 0.82 +0.4
4,657,843 - AO353_21285 0.82 +0.9
4,657,845 + AO353_21285 0.82 +0.9
4,657,845 + AO353_21285 0.82 +0.0
4,657,845 + AO353_21285 0.82 +0.6
4,657,845 + AO353_21285 0.82 -0.2
4,657,845 + AO353_21285 0.82 -0.8
4,657,845 + AO353_21285 0.82 +2.3
4,657,845 + AO353_21285 0.82 -1.1
4,657,846 - AO353_21285 0.83 +0.4
4,657,846 - AO353_21285 0.83 +0.4
4,657,846 - AO353_21285 0.83 -1.0
4,657,916 + +0.3
4,657,917 - +1.3
4,657,917 - +0.8
4,657,994 + -0.6
4,657,995 - -0.2
4,657,995 - +0.8
4,657,995 - +0.9
4,657,995 - -0.8
4,657,995 - -0.7
4,657,995 - +0.5
4,657,999 + -0.2
4,658,000 - +0.9
4,658,000 - +1.8
4,658,000 - -0.1
4,658,000 - +0.5
4,658,000 - -0.1
4,658,000 - -1.0
4,658,124 + -1.7
4,658,202 + +0.8
4,658,202 + +0.2
4,658,203 - +0.3
4,658,203 - -0.1
4,658,207 + -1.5
4,658,207 + +0.0
4,658,207 + -0.5
4,658,207 + -0.3
4,658,207 + -1.5
4,658,208 - -1.8
4,658,231 + -0.2
4,658,231 + -1.9
4,658,231 + -0.7
4,658,231 + +0.9
4,658,232 - +0.1
4,658,232 - -0.2
4,658,232 - +0.8
4,658,232 - +1.2
4,658,497 + AO353_21290 0.84 +2.6
4,658,497 + AO353_21290 0.84 +1.8
4,658,497 + AO353_21290 0.84 +0.5
4,658,497 + AO353_21290 0.84 +0.3
4,658,498 - AO353_21290 0.84 +1.0
4,658,498 - AO353_21290 0.84 -1.0
4,658,498 - AO353_21290 0.84 -0.2
4,658,498 - AO353_21290 0.84 +1.1
4,658,498 - AO353_21290 0.84 -0.8
4,658,604 + +1.1
4,658,755 - -0.9
4,658,766 + -1.2
4,658,767 - +0.3
4,658,767 - +0.6
4,658,839 + +0.5
4,658,840 - -1.2
4,658,851 + -0.9
4,658,851 + +1.3
4,658,851 + -0.2
4,658,886 - -0.6
4,658,887 + -1.0
4,658,888 - +0.3
4,658,888 - +1.1
4,658,896 + +1.3
4,658,896 + -0.6
4,658,896 + -0.2
4,658,896 + -0.0
4,658,897 - +0.1
4,658,897 - -0.5
4,658,914 + -0.1
4,658,914 + -0.7
4,658,922 + -1.2
4,658,922 + -1.0
4,658,922 + -0.2
4,658,922 + +0.9
4,658,922 + -3.4
4,658,922 + +0.9
4,658,922 + -0.2
4,658,922 + -0.5
4,658,923 - -0.4
4,658,923 - -0.9
4,658,923 - +1.1
4,658,923 - +0.7
4,658,923 - -1.5
4,658,923 - +0.3
4,658,992 - -0.2
4,658,992 - +0.8
4,659,035 + -1.1
4,659,035 + +0.8
4,659,071 - +0.1
4,659,123 + -1.5
4,659,124 - +1.1
4,659,124 - -0.1
4,659,140 + -0.1
4,659,140 + +1.1
4,659,140 + -0.5
4,659,140 + +0.0
4,659,141 - +0.3
4,659,141 - +0.3
4,659,141 - -0.1
4,659,141 - -0.7
4,659,141 - -0.6
4,659,145 + +0.3
4,659,145 + -0.9
4,659,145 + -0.1
4,659,145 + -0.3
4,659,145 + +0.7
4,659,146 - +0.0
4,659,146 - +0.0
4,659,146 - -0.1
4,659,146 - +0.5
4,659,148 + +0.3
4,659,148 + +0.1
4,659,193 + -0.2
4,659,194 - +0.0
4,659,194 - +0.2
4,659,204 + +0.1
4,659,204 + -0.4
4,659,205 - -0.7
4,659,205 - -0.4
4,659,263 + +0.8
4,659,263 + +0.0
4,659,263 + -0.0
4,659,264 - -0.5
4,659,264 - -0.6
4,659,264 - -1.1
4,659,265 + -0.4
4,659,265 + -0.2
4,659,265 + -1.2
4,659,265 + +0.9
4,659,265 + +0.8
4,659,265 + -0.1
4,659,265 + -0.1
4,659,265 + -1.2
4,659,265 + +0.3
4,659,265 + -0.7
4,659,265 + -0.1
4,659,265 + -0.7
4,659,265 + +0.3
4,659,266 - +0.8
4,659,266 - -0.7
4,659,266 - -0.5
4,659,266 - +0.1
4,659,266 - +0.9
4,659,297 + +0.9
4,659,297 + +0.9
4,659,297 + +0.8
4,659,298 - -0.2
4,659,298 - -0.4
4,659,318 + +0.9
4,659,318 + -0.7
4,659,318 + +0.9
4,659,319 - -1.0
4,659,319 - +0.2
4,659,407 + -1.0
4,659,407 + -0.2
4,659,408 - +1.0
4,659,454 + -2.1
4,659,454 + +0.0
4,659,454 + +2.9
4,659,454 + -0.4
4,659,454 + +0.0
4,659,454 + -0.6
4,659,454 + -0.2
4,659,455 - -0.4
4,659,455 - -0.2
4,659,455 - -1.7
4,659,455 - -2.1
4,659,473 + -1.1
4,659,474 - +0.9
4,659,474 - +0.8

Or see this region's nucleotide sequence