Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_20685

Experiment: m-Inositol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_20675 and AO353_20680 overlap by 17 nucleotidesAO353_20680 and AO353_20685 are separated by 98 nucleotidesAO353_20685 and AO353_20690 are separated by 41 nucleotides AO353_20675: AO353_20675 - bifunctional folylpolyglutamate synthase/dihydrofolate synthase, at 4,536,535 to 4,537,842 _20675 AO353_20680: AO353_20680 - cell division protein, at 4,537,826 to 4,538,482 _20680 AO353_20685: AO353_20685 - colicin V production CvpA, at 4,538,581 to 4,539,141 _20685 AO353_20690: AO353_20690 - amidophosphoribosyltransferase, at 4,539,183 to 4,540,688 _20690 Position (kb) 4538 4539 4540Strain fitness (log2 ratio) -2 -1 0 1 2 3at 4537.847 kb on + strandat 4537.848 kb on - strandat 4538.063 kb on - strand, within AO353_20680at 4538.063 kb on - strand, within AO353_20680at 4538.330 kb on + strand, within AO353_20680at 4538.330 kb on + strand, within AO353_20680at 4538.330 kb on + strand, within AO353_20680at 4538.330 kb on + strand, within AO353_20680at 4538.330 kb on + strand, within AO353_20680at 4538.331 kb on - strand, within AO353_20680at 4538.331 kb on - strand, within AO353_20680at 4538.339 kb on + strand, within AO353_20680at 4538.339 kb on + strand, within AO353_20680at 4538.339 kb on + strand, within AO353_20680at 4538.340 kb on - strand, within AO353_20680at 4538.340 kb on - strand, within AO353_20680at 4538.486 kb on + strandat 4538.486 kb on + strandat 4538.487 kb on - strandat 4538.524 kb on - strandat 4538.570 kb on + strandat 4538.589 kb on + strandat 4538.589 kb on + strandat 4538.590 kb on - strandat 4538.590 kb on - strandat 4538.590 kb on - strandat 4538.737 kb on + strand, within AO353_20685at 4538.738 kb on - strand, within AO353_20685at 4538.810 kb on + strand, within AO353_20685at 4538.810 kb on + strand, within AO353_20685at 4538.810 kb on + strand, within AO353_20685at 4538.811 kb on - strand, within AO353_20685at 4538.813 kb on + strand, within AO353_20685at 4538.833 kb on + strand, within AO353_20685at 4538.833 kb on + strand, within AO353_20685at 4538.833 kb on + strand, within AO353_20685at 4538.833 kb on + strand, within AO353_20685at 4538.833 kb on + strand, within AO353_20685at 4538.833 kb on + strand, within AO353_20685at 4538.833 kb on + strand, within AO353_20685at 4538.833 kb on + strand, within AO353_20685at 4538.833 kb on + strand, within AO353_20685at 4538.834 kb on - strand, within AO353_20685at 4538.834 kb on - strand, within AO353_20685at 4538.834 kb on - strand, within AO353_20685at 4538.839 kb on - strand, within AO353_20685at 4538.973 kb on + strand, within AO353_20685at 4538.973 kb on + strand, within AO353_20685at 4538.973 kb on + strand, within AO353_20685at 4538.974 kb on - strand, within AO353_20685at 4539.011 kb on + strand, within AO353_20685at 4539.041 kb on + strand, within AO353_20685at 4539.041 kb on + strand, within AO353_20685at 4539.041 kb on + strand, within AO353_20685at 4539.041 kb on + strand, within AO353_20685at 4539.044 kb on + strand, within AO353_20685at 4539.044 kb on + strand, within AO353_20685at 4539.044 kb on + strand, within AO353_20685at 4539.044 kb on + strand, within AO353_20685at 4539.044 kb on + strand, within AO353_20685at 4539.083 kb on + strand, within AO353_20685at 4539.095 kb on + strandat 4539.095 kb on + strandat 4539.164 kb on + strandat 4539.164 kb on + strandat 4539.165 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m-Inositol (C)
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4,537,847 + -2.5
4,537,848 - -0.3
4,538,063 - AO353_20680 0.36 +0.4
4,538,063 - AO353_20680 0.36 -0.8
4,538,330 + AO353_20680 0.77 +0.2
4,538,330 + AO353_20680 0.77 -1.2
4,538,330 + AO353_20680 0.77 -1.2
4,538,330 + AO353_20680 0.77 -0.1
4,538,330 + AO353_20680 0.77 +0.6
4,538,331 - AO353_20680 0.77 -1.2
4,538,331 - AO353_20680 0.77 +1.4
4,538,339 + AO353_20680 0.78 +0.6
4,538,339 + AO353_20680 0.78 +0.0
4,538,339 + AO353_20680 0.78 -2.3
4,538,340 - AO353_20680 0.78 -0.5
4,538,340 - AO353_20680 0.78 +0.4
4,538,486 + -1.1
4,538,486 + -0.5
4,538,487 - -1.8
4,538,524 - +0.2
4,538,570 + -2.0
4,538,589 + +0.8
4,538,589 + -0.4
4,538,590 - -0.4
4,538,590 - +1.4
4,538,590 - -0.6
4,538,737 + AO353_20685 0.28 -0.1
4,538,738 - AO353_20685 0.28 -0.6
4,538,810 + AO353_20685 0.41 -1.2
4,538,810 + AO353_20685 0.41 -1.0
4,538,810 + AO353_20685 0.41 -1.1
4,538,811 - AO353_20685 0.41 -0.5
4,538,813 + AO353_20685 0.41 -1.0
4,538,833 + AO353_20685 0.45 -1.1
4,538,833 + AO353_20685 0.45 -1.4
4,538,833 + AO353_20685 0.45 -1.6
4,538,833 + AO353_20685 0.45 -0.2
4,538,833 + AO353_20685 0.45 -1.1
4,538,833 + AO353_20685 0.45 +0.4
4,538,833 + AO353_20685 0.45 -2.4
4,538,833 + AO353_20685 0.45 -1.2
4,538,833 + AO353_20685 0.45 -1.8
4,538,834 - AO353_20685 0.45 -0.4
4,538,834 - AO353_20685 0.45 -1.2
4,538,834 - AO353_20685 0.45 -0.5
4,538,839 - AO353_20685 0.46 +0.1
4,538,973 + AO353_20685 0.70 -0.2
4,538,973 + AO353_20685 0.70 -0.6
4,538,973 + AO353_20685 0.70 -1.5
4,538,974 - AO353_20685 0.70 -0.2
4,539,011 + AO353_20685 0.77 -0.1
4,539,041 + AO353_20685 0.82 +0.0
4,539,041 + AO353_20685 0.82 +0.0
4,539,041 + AO353_20685 0.82 -0.8
4,539,041 + AO353_20685 0.82 -2.3
4,539,044 + AO353_20685 0.83 -0.1
4,539,044 + AO353_20685 0.83 -1.3
4,539,044 + AO353_20685 0.83 -0.6
4,539,044 + AO353_20685 0.83 -0.9
4,539,044 + AO353_20685 0.83 -0.6
4,539,083 + AO353_20685 0.89 +0.6
4,539,095 + +0.1
4,539,095 + -1.0
4,539,164 + -1.0
4,539,164 + +2.9
4,539,165 - -1.4

Or see this region's nucleotide sequence