Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_20585

Experiment: m-Inositol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_20560 and AO353_20565 are separated by 189 nucleotidesAO353_20565 and AO353_20570 are separated by 79 nucleotidesAO353_20570 and AO353_20575 are separated by 53 nucleotidesAO353_20575 and AO353_20580 are separated by 80 nucleotidesAO353_20580 and AO353_20585 are separated by 182 nucleotidesAO353_20585 and AO353_20590 are separated by 29 nucleotidesAO353_20590 and AO353_20595 are separated by 47 nucleotides AO353_20560: AO353_20560 - glutamate--tRNA ligase, at 4,513,006 to 4,514,487 _20560 AO353_20565: AO353_20565 - tRNA-Ala, at 4,514,677 to 4,514,752 _20565 AO353_20570: AO353_20570 - tRNA-Glu, at 4,514,832 to 4,514,907 _20570 AO353_20575: AO353_20575 - tRNA-Ala, at 4,514,961 to 4,515,036 _20575 AO353_20580: AO353_20580 - tRNA-Glu, at 4,515,117 to 4,515,192 _20580 AO353_20585: AO353_20585 - TetR family transcriptional regulator, at 4,515,375 to 4,515,914 _20585 AO353_20590: AO353_20590 - hydrolase, at 4,515,944 to 4,516,777 _20590 AO353_20595: AO353_20595 - 4-hydroxybenzoyl-CoA thioesterase, at 4,516,825 to 4,517,262 _20595 Position (kb) 4515 4516Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 4514.490 kb on + strandat 4514.490 kb on + strandat 4514.490 kb on + strandat 4514.490 kb on + strandat 4514.490 kb on + strandat 4514.491 kb on - strandat 4514.577 kb on + strandat 4514.684 kb on + strandat 4514.742 kb on + strand, within AO353_20565at 4514.742 kb on + strand, within AO353_20565at 4514.756 kb on + strandat 4514.912 kb on + strandat 4514.912 kb on + strandat 4515.026 kb on + strand, within AO353_20575at 4515.082 kb on + strandat 4515.082 kb on + strandat 4515.215 kb on + strandat 4515.215 kb on + strandat 4515.215 kb on + strandat 4515.215 kb on + strandat 4515.215 kb on + strandat 4515.215 kb on + strandat 4515.215 kb on + strandat 4515.215 kb on + strandat 4515.215 kb on + strandat 4515.215 kb on + strandat 4515.217 kb on + strandat 4515.217 kb on + strandat 4515.217 kb on + strandat 4515.458 kb on + strand, within AO353_20585at 4515.491 kb on + strand, within AO353_20585at 4515.492 kb on - strand, within AO353_20585at 4515.507 kb on + strand, within AO353_20585at 4515.507 kb on + strand, within AO353_20585at 4515.507 kb on + strand, within AO353_20585at 4515.507 kb on + strand, within AO353_20585at 4515.508 kb on - strandat 4515.642 kb on + strand, within AO353_20585at 4515.642 kb on + strand, within AO353_20585at 4515.910 kb on + strandat 4515.910 kb on + strandat 4515.910 kb on + strandat 4515.911 kb on - strandat 4515.911 kb on - strandat 4515.911 kb on - strandat 4515.954 kb on + strandat 4515.954 kb on + strandat 4515.954 kb on + strandat 4515.954 kb on + strandat 4515.954 kb on + strandat 4515.954 kb on + strandat 4515.954 kb on + strandat 4515.954 kb on + strandat 4515.954 kb on + strandat 4515.955 kb on - strandat 4515.955 kb on - strandat 4515.955 kb on - strandat 4515.955 kb on - strandat 4515.955 kb on - strandat 4516.212 kb on + strand, within AO353_20590at 4516.213 kb on - strand, within AO353_20590at 4516.562 kb on + strand, within AO353_20590at 4516.563 kb on - strand, within AO353_20590at 4516.573 kb on + strand, within AO353_20590at 4516.573 kb on + strand, within AO353_20590at 4516.786 kb on + strandat 4516.787 kb on - strandat 4516.851 kb on + strandat 4516.851 kb on + strandat 4516.852 kb on - strandat 4516.905 kb on + strand, within AO353_20595at 4516.905 kb on + strand, within AO353_20595

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Per-strain Table

Position Strand Gene LocusTag Fraction m-Inositol (C)
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4,514,490 + +1.8
4,514,490 + -1.0
4,514,490 + +0.5
4,514,490 + -1.6
4,514,490 + +0.8
4,514,491 - -0.0
4,514,577 + -0.2
4,514,684 + +1.4
4,514,742 + AO353_20565 0.86 -3.0
4,514,742 + AO353_20565 0.86 -2.4
4,514,756 + -1.1
4,514,912 + -0.6
4,514,912 + +0.0
4,515,026 + AO353_20575 0.86 +0.4
4,515,082 + +0.1
4,515,082 + +0.0
4,515,215 + -0.1
4,515,215 + -0.2
4,515,215 + +0.3
4,515,215 + +0.7
4,515,215 + -0.7
4,515,215 + +0.5
4,515,215 + +0.2
4,515,215 + +1.4
4,515,215 + -0.3
4,515,215 + -0.6
4,515,217 + +0.8
4,515,217 + -0.6
4,515,217 + +1.9
4,515,458 + AO353_20585 0.15 -1.6
4,515,491 + AO353_20585 0.21 -0.4
4,515,492 - AO353_20585 0.22 -0.6
4,515,507 + AO353_20585 0.24 +0.1
4,515,507 + AO353_20585 0.24 -0.8
4,515,507 + AO353_20585 0.24 -1.2
4,515,507 + AO353_20585 0.24 -1.6
4,515,508 - -1.4
4,515,642 + AO353_20585 0.49 -0.4
4,515,642 + AO353_20585 0.49 -0.6
4,515,910 + -1.4
4,515,910 + +0.0
4,515,910 + -0.4
4,515,911 - -1.2
4,515,911 - -0.2
4,515,911 - -1.1
4,515,954 + +0.4
4,515,954 + +1.1
4,515,954 + +1.2
4,515,954 + +0.1
4,515,954 + +1.4
4,515,954 + -0.2
4,515,954 + -0.4
4,515,954 + -0.6
4,515,954 + -0.3
4,515,955 - +0.0
4,515,955 - +0.6
4,515,955 - +0.8
4,515,955 - -0.8
4,515,955 - -0.1
4,516,212 + AO353_20590 0.32 -0.2
4,516,213 - AO353_20590 0.32 +1.2
4,516,562 + AO353_20590 0.74 +0.4
4,516,563 - AO353_20590 0.74 +1.4
4,516,573 + AO353_20590 0.75 -0.2
4,516,573 + AO353_20590 0.75 +0.8
4,516,786 + -0.6
4,516,787 - +1.1
4,516,851 + -1.4
4,516,851 + +0.2
4,516,852 - -0.6
4,516,905 + AO353_20595 0.18 -0.2
4,516,905 + AO353_20595 0.18 +0.0

Or see this region's nucleotide sequence