Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_20510

Experiment: m-Inositol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_20500 and AO353_20505 are separated by 1 nucleotidesAO353_20505 and AO353_20510 are separated by 190 nucleotidesAO353_20510 and AO353_20515 are separated by 10 nucleotides AO353_20500: AO353_20500 - ADP-ribose pyrophosphatase, at 4,501,195 to 4,501,902 _20500 AO353_20505: AO353_20505 - cytidyltransferase, at 4,501,904 to 4,502,449 _20505 AO353_20510: AO353_20510 - amidase, at 4,502,640 to 4,503,287 _20510 AO353_20515: AO353_20515 - nicotinate phosphoribosyltransferase, at 4,503,298 to 4,504,527 _20515 Position (kb) 4502 4503 4504Strain fitness (log2 ratio) -2 -1 0 1 2at 4501.924 kb on - strandat 4501.933 kb on - strandat 4501.933 kb on - strandat 4501.933 kb on - strandat 4501.933 kb on - strandat 4501.933 kb on - strandat 4501.933 kb on - strandat 4502.079 kb on + strand, within AO353_20505at 4502.134 kb on + strand, within AO353_20505at 4502.178 kb on + strand, within AO353_20505at 4502.178 kb on + strand, within AO353_20505at 4502.178 kb on + strand, within AO353_20505at 4502.179 kb on - strand, within AO353_20505at 4502.179 kb on - strand, within AO353_20505at 4502.179 kb on - strand, within AO353_20505at 4502.179 kb on - strand, within AO353_20505at 4502.184 kb on + strand, within AO353_20505at 4502.184 kb on + strand, within AO353_20505at 4502.185 kb on - strand, within AO353_20505at 4502.185 kb on - strand, within AO353_20505at 4502.185 kb on - strand, within AO353_20505at 4502.185 kb on - strand, within AO353_20505at 4502.185 kb on - strand, within AO353_20505at 4502.261 kb on + strand, within AO353_20505at 4502.261 kb on + strand, within AO353_20505at 4502.261 kb on + strand, within AO353_20505at 4502.262 kb on - strand, within AO353_20505at 4502.262 kb on - strand, within AO353_20505at 4502.304 kb on + strand, within AO353_20505at 4502.305 kb on - strand, within AO353_20505at 4502.438 kb on + strandat 4502.439 kb on - strandat 4502.439 kb on - strandat 4502.445 kb on + strandat 4502.445 kb on + strandat 4502.446 kb on - strandat 4502.446 kb on - strandat 4502.446 kb on - strandat 4502.446 kb on - strandat 4502.446 kb on - strandat 4502.446 kb on - strandat 4502.446 kb on - strandat 4502.479 kb on + strandat 4502.532 kb on + strandat 4502.542 kb on - strandat 4502.542 kb on - strandat 4502.542 kb on - strandat 4502.956 kb on - strand, within AO353_20510at 4502.962 kb on - strand, within AO353_20510at 4503.013 kb on - strand, within AO353_20510at 4503.054 kb on + strand, within AO353_20510at 4503.315 kb on + strandat 4503.355 kb on + strandat 4503.355 kb on + strandat 4503.355 kb on + strandat 4503.355 kb on + strandat 4503.356 kb on - strandat 4503.356 kb on - strandat 4503.356 kb on - strandat 4503.356 kb on - strandat 4503.358 kb on + strandat 4503.358 kb on + strandat 4503.358 kb on + strandat 4503.358 kb on + strandat 4503.358 kb on + strandat 4503.358 kb on + strandat 4503.358 kb on + strandat 4503.358 kb on + strandat 4503.358 kb on + strandat 4503.358 kb on + strandat 4503.359 kb on - strandat 4503.359 kb on - strandat 4503.359 kb on - strandat 4503.359 kb on - strandat 4503.359 kb on - strandat 4503.359 kb on - strandat 4503.359 kb on - strandat 4503.359 kb on - strandat 4503.359 kb on - strandat 4503.359 kb on - strandat 4503.359 kb on - strandat 4503.359 kb on - strandat 4503.359 kb on - strandat 4503.415 kb on + strandat 4503.415 kb on + strandat 4503.534 kb on + strand, within AO353_20515at 4503.535 kb on - strand, within AO353_20515at 4503.535 kb on - strand, within AO353_20515at 4503.535 kb on - strand, within AO353_20515at 4503.550 kb on + strand, within AO353_20515at 4503.550 kb on + strand, within AO353_20515at 4503.550 kb on + strand, within AO353_20515at 4503.551 kb on - strand, within AO353_20515at 4503.551 kb on - strand, within AO353_20515at 4503.551 kb on - strand, within AO353_20515at 4503.551 kb on - strand, within AO353_20515at 4503.604 kb on + strand, within AO353_20515at 4503.605 kb on - strand, within AO353_20515at 4503.605 kb on - strand, within AO353_20515at 4503.727 kb on + strand, within AO353_20515at 4503.727 kb on + strand, within AO353_20515at 4503.728 kb on - strand, within AO353_20515at 4503.766 kb on + strand, within AO353_20515at 4503.766 kb on + strand, within AO353_20515at 4503.944 kb on - strand, within AO353_20515at 4504.060 kb on + strand, within AO353_20515at 4504.060 kb on + strand, within AO353_20515at 4504.061 kb on - strand, within AO353_20515at 4504.132 kb on + strand, within AO353_20515at 4504.132 kb on + strand, within AO353_20515at 4504.132 kb on + strand, within AO353_20515at 4504.132 kb on + strand, within AO353_20515at 4504.133 kb on - strand, within AO353_20515at 4504.133 kb on - strand, within AO353_20515at 4504.147 kb on + strand, within AO353_20515at 4504.147 kb on + strand, within AO353_20515at 4504.148 kb on - strand, within AO353_20515at 4504.148 kb on - strand, within AO353_20515at 4504.148 kb on - strand, within AO353_20515at 4504.210 kb on + strand, within AO353_20515at 4504.210 kb on + strand, within AO353_20515at 4504.211 kb on - strand, within AO353_20515

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Per-strain Table

Position Strand Gene LocusTag Fraction m-Inositol (C)
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4,501,924 - +1.1
4,501,933 - -0.6
4,501,933 - +0.5
4,501,933 - -0.4
4,501,933 - -0.8
4,501,933 - +1.1
4,501,933 - -0.2
4,502,079 + AO353_20505 0.32 -2.1
4,502,134 + AO353_20505 0.42 -0.6
4,502,178 + AO353_20505 0.50 +0.4
4,502,178 + AO353_20505 0.50 -0.0
4,502,178 + AO353_20505 0.50 +0.0
4,502,179 - AO353_20505 0.50 -0.1
4,502,179 - AO353_20505 0.50 -1.1
4,502,179 - AO353_20505 0.50 +1.1
4,502,179 - AO353_20505 0.50 +0.0
4,502,184 + AO353_20505 0.51 -1.4
4,502,184 + AO353_20505 0.51 +0.8
4,502,185 - AO353_20505 0.51 +0.3
4,502,185 - AO353_20505 0.51 +0.9
4,502,185 - AO353_20505 0.51 +0.0
4,502,185 - AO353_20505 0.51 -0.0
4,502,185 - AO353_20505 0.51 -0.5
4,502,261 + AO353_20505 0.65 +1.6
4,502,261 + AO353_20505 0.65 +0.6
4,502,261 + AO353_20505 0.65 -0.0
4,502,262 - AO353_20505 0.66 +0.0
4,502,262 - AO353_20505 0.66 -1.3
4,502,304 + AO353_20505 0.73 -0.4
4,502,305 - AO353_20505 0.73 +1.2
4,502,438 + -0.0
4,502,439 - -0.2
4,502,439 - -0.2
4,502,445 + -1.4
4,502,445 + +0.4
4,502,446 - +2.0
4,502,446 - -1.8
4,502,446 - +1.0
4,502,446 - +0.2
4,502,446 - -0.5
4,502,446 - -0.6
4,502,446 - -0.0
4,502,479 + +0.8
4,502,532 + -2.0
4,502,542 - -0.2
4,502,542 - +0.8
4,502,542 - -2.4
4,502,956 - AO353_20510 0.49 -0.7
4,502,962 - AO353_20510 0.50 -2.0
4,503,013 - AO353_20510 0.58 -0.2
4,503,054 + AO353_20510 0.64 -0.6
4,503,315 + -0.3
4,503,355 + -1.8
4,503,355 + +0.4
4,503,355 + -1.8
4,503,355 + +1.4
4,503,356 - -1.0
4,503,356 - +0.0
4,503,356 - +0.2
4,503,356 - -0.2
4,503,358 + -0.6
4,503,358 + +1.4
4,503,358 + -1.0
4,503,358 + +1.1
4,503,358 + +1.0
4,503,358 + -0.4
4,503,358 + -0.1
4,503,358 + +0.3
4,503,358 + -0.3
4,503,358 + +0.0
4,503,359 - -1.0
4,503,359 - -0.2
4,503,359 - -1.0
4,503,359 - +0.4
4,503,359 - +0.0
4,503,359 - -1.1
4,503,359 - -0.7
4,503,359 - -0.5
4,503,359 - +1.1
4,503,359 - -0.9
4,503,359 - -0.6
4,503,359 - -0.4
4,503,359 - +0.1
4,503,415 + +0.4
4,503,415 + +0.2
4,503,534 + AO353_20515 0.19 +0.9
4,503,535 - AO353_20515 0.19 +0.4
4,503,535 - AO353_20515 0.19 +0.4
4,503,535 - AO353_20515 0.19 -0.6
4,503,550 + AO353_20515 0.20 +0.0
4,503,550 + AO353_20515 0.20 -2.2
4,503,550 + AO353_20515 0.20 +0.6
4,503,551 - AO353_20515 0.21 +0.1
4,503,551 - AO353_20515 0.21 -0.2
4,503,551 - AO353_20515 0.21 -0.4
4,503,551 - AO353_20515 0.21 -1.0
4,503,604 + AO353_20515 0.25 -0.4
4,503,605 - AO353_20515 0.25 -1.2
4,503,605 - AO353_20515 0.25 +0.2
4,503,727 + AO353_20515 0.35 -0.1
4,503,727 + AO353_20515 0.35 +0.6
4,503,728 - AO353_20515 0.35 +0.8
4,503,766 + AO353_20515 0.38 +0.1
4,503,766 + AO353_20515 0.38 +0.7
4,503,944 - AO353_20515 0.53 +0.7
4,504,060 + AO353_20515 0.62 -0.7
4,504,060 + AO353_20515 0.62 -0.2
4,504,061 - AO353_20515 0.62 +1.4
4,504,132 + AO353_20515 0.68 -0.5
4,504,132 + AO353_20515 0.68 -2.1
4,504,132 + AO353_20515 0.68 +0.5
4,504,132 + AO353_20515 0.68 +0.1
4,504,133 - AO353_20515 0.68 -0.2
4,504,133 - AO353_20515 0.68 +2.4
4,504,147 + AO353_20515 0.69 -0.2
4,504,147 + AO353_20515 0.69 -1.6
4,504,148 - AO353_20515 0.69 -0.8
4,504,148 - AO353_20515 0.69 -0.6
4,504,148 - AO353_20515 0.69 -0.4
4,504,210 + AO353_20515 0.74 +0.0
4,504,210 + AO353_20515 0.74 -0.1
4,504,211 - AO353_20515 0.74 +1.9

Or see this region's nucleotide sequence