Experiment: m-Inositol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_19745 and AO353_19750 are separated by 130 nucleotides AO353_19750 and AO353_19755 are separated by 108 nucleotides
AO353_19745: AO353_19745 - Rieske (2Fe-2S) protein, at 4,340,767 to 4,341,900
_19745
AO353_19750: AO353_19750 - diaminopimelate epimerase, at 4,342,031 to 4,343,023
_19750
AO353_19755: AO353_19755 - cytosine deaminase, at 4,343,132 to 4,344,370
_19755
Position (kb)
4342
4343
4344 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 4341.118 kb on + strand, within AO353_19745 at 4341.134 kb on - strand, within AO353_19745 at 4341.134 kb on - strand, within AO353_19745 at 4341.134 kb on - strand, within AO353_19745 at 4341.155 kb on + strand, within AO353_19745 at 4341.155 kb on + strand, within AO353_19745 at 4341.155 kb on + strand, within AO353_19745 at 4341.155 kb on + strand, within AO353_19745 at 4341.155 kb on + strand, within AO353_19745 at 4341.156 kb on - strand, within AO353_19745 at 4341.156 kb on - strand, within AO353_19745 at 4341.156 kb on - strand, within AO353_19745 at 4341.195 kb on + strand, within AO353_19745 at 4341.251 kb on + strand, within AO353_19745 at 4341.252 kb on - strand, within AO353_19745 at 4341.346 kb on + strand, within AO353_19745 at 4341.346 kb on + strand, within AO353_19745 at 4341.346 kb on + strand, within AO353_19745 at 4341.347 kb on - strand, within AO353_19745 at 4341.396 kb on + strand, within AO353_19745 at 4341.397 kb on - strand, within AO353_19745 at 4341.397 kb on - strand, within AO353_19745 at 4341.397 kb on - strand, within AO353_19745 at 4341.586 kb on + strand, within AO353_19745 at 4341.586 kb on + strand, within AO353_19745 at 4341.586 kb on + strand, within AO353_19745 at 4341.586 kb on + strand, within AO353_19745 at 4341.587 kb on - strand, within AO353_19745 at 4341.611 kb on + strand, within AO353_19745 at 4341.683 kb on + strand, within AO353_19745 at 4341.700 kb on + strand, within AO353_19745 at 4341.700 kb on + strand, within AO353_19745 at 4341.700 kb on + strand, within AO353_19745 at 4341.701 kb on - strand, within AO353_19745 at 4341.701 kb on - strand, within AO353_19745 at 4341.701 kb on - strand, within AO353_19745 at 4341.702 kb on + strand, within AO353_19745 at 4341.735 kb on + strand, within AO353_19745 at 4341.735 kb on + strand, within AO353_19745 at 4341.735 kb on + strand, within AO353_19745 at 4341.735 kb on + strand, within AO353_19745 at 4341.736 kb on - strand, within AO353_19745 at 4341.736 kb on - strand, within AO353_19745 at 4341.736 kb on - strand, within AO353_19745 at 4341.753 kb on + strand, within AO353_19745 at 4341.754 kb on - strand, within AO353_19745 at 4341.754 kb on - strand, within AO353_19745 at 4341.754 kb on - strand, within AO353_19745 at 4341.906 kb on - strand at 4341.991 kb on - strand at 4341.991 kb on - strand at 4341.991 kb on - strand at 4341.995 kb on + strand at 4341.996 kb on - strand at 4342.043 kb on + strand at 4342.043 kb on + strand at 4342.060 kb on + strand at 4342.060 kb on + strand at 4342.061 kb on - strand at 4342.061 kb on - strand at 4342.061 kb on - strand at 4342.061 kb on - strand at 4342.135 kb on + strand, within AO353_19750 at 4342.135 kb on + strand, within AO353_19750 at 4342.136 kb on - strand, within AO353_19750 at 4342.676 kb on - strand, within AO353_19750 at 4343.059 kb on - strand at 4343.097 kb on - strand at 4343.196 kb on + strand at 4343.230 kb on - strand at 4343.318 kb on - strand, within AO353_19755 at 4343.616 kb on + strand, within AO353_19755 at 4343.616 kb on + strand, within AO353_19755 at 4343.617 kb on - strand, within AO353_19755 at 4343.629 kb on - strand, within AO353_19755 at 4343.629 kb on - strand, within AO353_19755 at 4343.823 kb on + strand, within AO353_19755 at 4343.823 kb on + strand, within AO353_19755 at 4343.823 kb on + strand, within AO353_19755
Per-strain Table
Position Strand Gene LocusTag Fraction m-Inositol (C) remove 4,341,118 + AO353_19745 0.31 -1.4 4,341,134 - AO353_19745 0.32 -0.2 4,341,134 - AO353_19745 0.32 -0.9 4,341,134 - AO353_19745 0.32 +0.4 4,341,155 + AO353_19745 0.34 +0.5 4,341,155 + AO353_19745 0.34 -1.2 4,341,155 + AO353_19745 0.34 +1.0 4,341,155 + AO353_19745 0.34 -0.2 4,341,155 + AO353_19745 0.34 -0.1 4,341,156 - AO353_19745 0.34 +0.2 4,341,156 - AO353_19745 0.34 -0.3 4,341,156 - AO353_19745 0.34 +0.6 4,341,195 + AO353_19745 0.38 -0.6 4,341,251 + AO353_19745 0.43 -0.6 4,341,252 - AO353_19745 0.43 +0.1 4,341,346 + AO353_19745 0.51 +0.4 4,341,346 + AO353_19745 0.51 -1.2 4,341,346 + AO353_19745 0.51 -0.2 4,341,347 - AO353_19745 0.51 -1.4 4,341,396 + AO353_19745 0.55 -0.8 4,341,397 - AO353_19745 0.56 +0.7 4,341,397 - AO353_19745 0.56 +0.6 4,341,397 - AO353_19745 0.56 +1.4 4,341,586 + AO353_19745 0.72 -0.6 4,341,586 + AO353_19745 0.72 -0.1 4,341,586 + AO353_19745 0.72 -1.6 4,341,586 + AO353_19745 0.72 -0.4 4,341,587 - AO353_19745 0.72 -0.4 4,341,611 + AO353_19745 0.74 -0.4 4,341,683 + AO353_19745 0.81 -0.1 4,341,700 + AO353_19745 0.82 +0.0 4,341,700 + AO353_19745 0.82 +0.9 4,341,700 + AO353_19745 0.82 -0.3 4,341,701 - AO353_19745 0.82 -1.8 4,341,701 - AO353_19745 0.82 -2.1 4,341,701 - AO353_19745 0.82 -1.0 4,341,702 + AO353_19745 0.82 -0.0 4,341,735 + AO353_19745 0.85 -1.6 4,341,735 + AO353_19745 0.85 -1.8 4,341,735 + AO353_19745 0.85 -0.2 4,341,735 + AO353_19745 0.85 +1.2 4,341,736 - AO353_19745 0.85 +0.5 4,341,736 - AO353_19745 0.85 -0.4 4,341,736 - AO353_19745 0.85 +0.3 4,341,753 + AO353_19745 0.87 -0.6 4,341,754 - AO353_19745 0.87 +0.8 4,341,754 - AO353_19745 0.87 -0.8 4,341,754 - AO353_19745 0.87 +0.3 4,341,906 - +0.7 4,341,991 - +0.8 4,341,991 - -0.0 4,341,991 - +0.5 4,341,995 + -1.6 4,341,996 - +0.6 4,342,043 + -0.5 4,342,043 + -0.6 4,342,060 + +0.4 4,342,060 + -0.2 4,342,061 - -0.7 4,342,061 - +0.0 4,342,061 - -1.1 4,342,061 - -0.9 4,342,135 + AO353_19750 0.10 +0.9 4,342,135 + AO353_19750 0.10 -0.2 4,342,136 - AO353_19750 0.11 +2.1 4,342,676 - AO353_19750 0.65 +0.5 4,343,059 - +1.4 4,343,097 - -0.1 4,343,196 + -0.1 4,343,230 - +1.4 4,343,318 - AO353_19755 0.15 -0.9 4,343,616 + AO353_19755 0.39 -0.2 4,343,616 + AO353_19755 0.39 -0.4 4,343,617 - AO353_19755 0.39 -0.5 4,343,629 - AO353_19755 0.40 -0.6 4,343,629 - AO353_19755 0.40 -0.3 4,343,823 + AO353_19755 0.56 -0.6 4,343,823 + AO353_19755 0.56 +0.2 4,343,823 + AO353_19755 0.56 +1.4
Or see this region's nucleotide sequence