Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_18780

Experiment: m-Inositol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_18775 and AO353_18780 are separated by 114 nucleotidesAO353_18780 and AO353_18785 overlap by 4 nucleotidesAO353_18785 and AO353_18790 are separated by 154 nucleotides AO353_18775: AO353_18775 - flagellar biosynthesis protein FlhF, at 4,128,971 to 4,130,302 _18775 AO353_18780: AO353_18780 - cobyrinic acid a,c-diamide synthase, at 4,130,417 to 4,131,247 _18780 AO353_18785: AO353_18785 - flagellar biosynthesis sigma factor, at 4,131,244 to 4,131,984 _18785 AO353_18790: AO353_18790 - histidine kinase, at 4,132,139 to 4,132,522 _18790 Position (kb) 4130 4131 4132Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 4129.675 kb on + strand, within AO353_18775at 4129.676 kb on - strand, within AO353_18775at 4129.709 kb on + strand, within AO353_18775at 4129.709 kb on + strand, within AO353_18775at 4129.710 kb on - strand, within AO353_18775at 4129.710 kb on - strand, within AO353_18775at 4129.721 kb on + strand, within AO353_18775at 4129.802 kb on - strand, within AO353_18775at 4129.802 kb on - strand, within AO353_18775at 4129.976 kb on + strand, within AO353_18775at 4129.977 kb on - strand, within AO353_18775at 4129.977 kb on - strand, within AO353_18775at 4129.993 kb on + strand, within AO353_18775at 4129.993 kb on + strand, within AO353_18775at 4130.024 kb on + strand, within AO353_18775at 4130.033 kb on + strand, within AO353_18775at 4130.033 kb on + strand, within AO353_18775at 4130.033 kb on + strand, within AO353_18775at 4130.033 kb on + strand, within AO353_18775at 4130.033 kb on + strand, within AO353_18775at 4130.033 kb on + strand, within AO353_18775at 4130.033 kb on + strand, within AO353_18775at 4130.034 kb on - strand, within AO353_18775at 4130.034 kb on - strand, within AO353_18775at 4130.034 kb on - strand, within AO353_18775at 4130.068 kb on + strand, within AO353_18775at 4130.069 kb on - strand, within AO353_18775at 4130.127 kb on + strand, within AO353_18775at 4130.127 kb on + strand, within AO353_18775at 4130.138 kb on + strand, within AO353_18775at 4130.139 kb on - strand, within AO353_18775at 4130.139 kb on - strand, within AO353_18775at 4130.172 kb on + strandat 4130.172 kb on + strandat 4130.172 kb on + strandat 4130.172 kb on + strandat 4130.173 kb on - strandat 4130.173 kb on - strandat 4130.178 kb on + strandat 4130.257 kb on + strandat 4130.257 kb on + strandat 4130.257 kb on + strandat 4130.257 kb on + strandat 4130.257 kb on + strandat 4130.257 kb on + strandat 4130.257 kb on + strandat 4130.258 kb on - strandat 4130.258 kb on - strandat 4130.258 kb on - strandat 4130.274 kb on - strandat 4130.305 kb on + strandat 4130.305 kb on + strandat 4130.305 kb on + strandat 4130.305 kb on + strandat 4130.305 kb on + strandat 4130.305 kb on + strandat 4130.306 kb on - strandat 4130.308 kb on + strandat 4130.308 kb on + strandat 4130.309 kb on - strandat 4130.309 kb on - strandat 4130.309 kb on - strandat 4130.315 kb on + strandat 4130.316 kb on - strandat 4130.323 kb on + strandat 4130.323 kb on + strandat 4130.324 kb on - strandat 4130.324 kb on - strandat 4130.324 kb on - strandat 4130.327 kb on + strandat 4130.327 kb on + strandat 4130.327 kb on + strandat 4130.327 kb on + strandat 4130.327 kb on + strandat 4130.327 kb on + strandat 4130.328 kb on - strandat 4130.380 kb on + strandat 4130.380 kb on + strandat 4130.380 kb on + strandat 4130.380 kb on + strandat 4130.380 kb on + strandat 4130.380 kb on + strandat 4130.380 kb on + strandat 4130.381 kb on - strandat 4130.381 kb on - strandat 4130.381 kb on - strandat 4130.391 kb on + strandat 4130.405 kb on + strandat 4130.436 kb on + strandat 4130.483 kb on - strandat 4130.483 kb on - strandat 4130.599 kb on + strand, within AO353_18780at 4130.600 kb on - strand, within AO353_18780at 4130.600 kb on - strand, within AO353_18780at 4130.643 kb on + strand, within AO353_18780at 4130.644 kb on - strand, within AO353_18780at 4130.644 kb on - strand, within AO353_18780at 4130.644 kb on - strand, within AO353_18780at 4130.644 kb on - strand, within AO353_18780at 4130.644 kb on - strand, within AO353_18780at 4130.644 kb on - strand, within AO353_18780at 4130.644 kb on - strand, within AO353_18780at 4130.644 kb on - strand, within AO353_18780at 4130.644 kb on - strand, within AO353_18780at 4130.646 kb on + strand, within AO353_18780at 4130.646 kb on + strand, within AO353_18780at 4130.647 kb on - strand, within AO353_18780at 4130.775 kb on + strand, within AO353_18780at 4130.776 kb on - strand, within AO353_18780at 4130.776 kb on - strand, within AO353_18780at 4130.776 kb on - strand, within AO353_18780at 4130.776 kb on - strand, within AO353_18780at 4130.801 kb on - strand, within AO353_18780at 4130.844 kb on + strand, within AO353_18780at 4130.844 kb on + strand, within AO353_18780at 4130.844 kb on + strand, within AO353_18780at 4130.844 kb on + strand, within AO353_18780at 4130.844 kb on + strand, within AO353_18780at 4130.844 kb on + strand, within AO353_18780at 4130.845 kb on - strand, within AO353_18780at 4130.845 kb on - strand, within AO353_18780at 4130.845 kb on - strand, within AO353_18780at 4130.845 kb on - strand, within AO353_18780at 4130.888 kb on + strand, within AO353_18780at 4131.035 kb on + strand, within AO353_18780at 4131.098 kb on + strand, within AO353_18780at 4131.099 kb on - strand, within AO353_18780at 4131.099 kb on - strand, within AO353_18780at 4131.243 kb on + strandat 4131.243 kb on + strandat 4131.243 kb on + strandat 4131.243 kb on + strandat 4131.244 kb on - strandat 4131.244 kb on - strandat 4131.244 kb on - strandat 4131.244 kb on - strandat 4131.259 kb on + strandat 4131.259 kb on + strandat 4131.269 kb on - strandat 4131.269 kb on - strandat 4131.295 kb on + strandat 4131.296 kb on - strandat 4131.326 kb on + strand, within AO353_18785at 4131.327 kb on - strand, within AO353_18785at 4131.327 kb on - strand, within AO353_18785at 4131.333 kb on + strand, within AO353_18785at 4131.333 kb on + strand, within AO353_18785at 4131.333 kb on + strand, within AO353_18785at 4131.333 kb on + strand, within AO353_18785at 4131.333 kb on + strand, within AO353_18785at 4131.333 kb on + strand, within AO353_18785at 4131.333 kb on + strand, within AO353_18785at 4131.334 kb on - strand, within AO353_18785at 4131.334 kb on - strand, within AO353_18785at 4131.334 kb on - strand, within AO353_18785at 4131.341 kb on - strand, within AO353_18785at 4131.341 kb on - strand, within AO353_18785at 4131.430 kb on + strand, within AO353_18785at 4131.431 kb on - strand, within AO353_18785at 4131.431 kb on - strand, within AO353_18785at 4131.431 kb on - strand, within AO353_18785at 4131.463 kb on + strand, within AO353_18785at 4131.463 kb on + strand, within AO353_18785at 4131.463 kb on + strand, within AO353_18785at 4131.464 kb on - strand, within AO353_18785at 4131.464 kb on - strand, within AO353_18785at 4131.464 kb on - strand, within AO353_18785at 4131.533 kb on + strand, within AO353_18785at 4131.534 kb on - strand, within AO353_18785at 4131.543 kb on + strand, within AO353_18785at 4131.544 kb on - strand, within AO353_18785at 4131.582 kb on + strand, within AO353_18785at 4131.583 kb on - strand, within AO353_18785at 4131.600 kb on + strand, within AO353_18785at 4131.646 kb on + strand, within AO353_18785at 4131.646 kb on + strand, within AO353_18785at 4131.646 kb on + strand, within AO353_18785at 4131.647 kb on - strand, within AO353_18785at 4131.647 kb on - strand, within AO353_18785at 4131.647 kb on - strand, within AO353_18785at 4131.853 kb on + strand, within AO353_18785at 4131.853 kb on + strand, within AO353_18785at 4131.853 kb on + strand, within AO353_18785at 4131.854 kb on - strand, within AO353_18785at 4131.854 kb on - strand, within AO353_18785at 4131.856 kb on + strand, within AO353_18785at 4131.857 kb on - strand, within AO353_18785at 4131.857 kb on - strand, within AO353_18785at 4131.926 kb on + strandat 4131.926 kb on + strandat 4131.927 kb on - strandat 4131.927 kb on - strandat 4131.927 kb on - strandat 4131.927 kb on - strandat 4131.927 kb on - strandat 4132.118 kb on + strandat 4132.118 kb on + strandat 4132.118 kb on + strandat 4132.119 kb on - strandat 4132.119 kb on - strandat 4132.119 kb on - strandat 4132.197 kb on + strand, within AO353_18790at 4132.197 kb on + strand, within AO353_18790at 4132.197 kb on + strand, within AO353_18790at 4132.197 kb on + strand, within AO353_18790at 4132.198 kb on - strand, within AO353_18790

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Per-strain Table

Position Strand Gene LocusTag Fraction m-Inositol (C)
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4,129,675 + AO353_18775 0.53 -0.7
4,129,676 - AO353_18775 0.53 -1.6
4,129,709 + AO353_18775 0.55 -0.5
4,129,709 + AO353_18775 0.55 +0.2
4,129,710 - AO353_18775 0.55 -0.7
4,129,710 - AO353_18775 0.55 +0.1
4,129,721 + AO353_18775 0.56 -0.1
4,129,802 - AO353_18775 0.62 -1.1
4,129,802 - AO353_18775 0.62 -0.6
4,129,976 + AO353_18775 0.75 -1.2
4,129,977 - AO353_18775 0.76 +0.5
4,129,977 - AO353_18775 0.76 -1.2
4,129,993 + AO353_18775 0.77 -1.9
4,129,993 + AO353_18775 0.77 +0.1
4,130,024 + AO353_18775 0.79 -0.9
4,130,033 + AO353_18775 0.80 -1.5
4,130,033 + AO353_18775 0.80 -0.9
4,130,033 + AO353_18775 0.80 -0.3
4,130,033 + AO353_18775 0.80 -0.5
4,130,033 + AO353_18775 0.80 -2.4
4,130,033 + AO353_18775 0.80 +1.7
4,130,033 + AO353_18775 0.80 +0.7
4,130,034 - AO353_18775 0.80 +0.3
4,130,034 - AO353_18775 0.80 +0.1
4,130,034 - AO353_18775 0.80 +0.7
4,130,068 + AO353_18775 0.82 -1.1
4,130,069 - AO353_18775 0.82 -0.7
4,130,127 + AO353_18775 0.87 -0.9
4,130,127 + AO353_18775 0.87 -0.5
4,130,138 + AO353_18775 0.88 -0.9
4,130,139 - AO353_18775 0.88 +0.5
4,130,139 - AO353_18775 0.88 -0.5
4,130,172 + +0.1
4,130,172 + +0.7
4,130,172 + -1.9
4,130,172 + -0.3
4,130,173 - +0.5
4,130,173 - -1.1
4,130,178 + +0.2
4,130,257 + -1.0
4,130,257 + +1.0
4,130,257 + +0.5
4,130,257 + -0.3
4,130,257 + -1.7
4,130,257 + -0.9
4,130,257 + +1.5
4,130,258 - -0.8
4,130,258 - -0.3
4,130,258 - +0.9
4,130,274 - +0.2
4,130,305 + -0.1
4,130,305 + +0.1
4,130,305 + -2.0
4,130,305 + +1.5
4,130,305 + -1.1
4,130,305 + -0.7
4,130,306 - +0.1
4,130,308 + -0.5
4,130,308 + +0.5
4,130,309 - -0.1
4,130,309 - +1.5
4,130,309 - +0.4
4,130,315 + -1.9
4,130,316 - -0.1
4,130,323 + +0.9
4,130,323 + -0.5
4,130,324 - -0.9
4,130,324 - -2.4
4,130,324 - +0.5
4,130,327 + +0.5
4,130,327 + -0.3
4,130,327 + -0.5
4,130,327 + +1.1
4,130,327 + -2.0
4,130,327 + -1.1
4,130,328 - -0.1
4,130,380 + -0.8
4,130,380 + -1.1
4,130,380 + +0.5
4,130,380 + -1.2
4,130,380 + +1.0
4,130,380 + -0.5
4,130,380 + +0.7
4,130,381 - +0.7
4,130,381 - +0.7
4,130,381 - -1.3
4,130,391 + +0.7
4,130,405 + -1.5
4,130,436 + -1.7
4,130,483 - -0.2
4,130,483 - -1.7
4,130,599 + AO353_18780 0.22 -0.3
4,130,600 - AO353_18780 0.22 -0.3
4,130,600 - AO353_18780 0.22 +0.2
4,130,643 + AO353_18780 0.27 +0.7
4,130,644 - AO353_18780 0.27 -1.3
4,130,644 - AO353_18780 0.27 +0.2
4,130,644 - AO353_18780 0.27 -2.6
4,130,644 - AO353_18780 0.27 -1.9
4,130,644 - AO353_18780 0.27 +0.3
4,130,644 - AO353_18780 0.27 -3.2
4,130,644 - AO353_18780 0.27 +0.3
4,130,644 - AO353_18780 0.27 -2.1
4,130,644 - AO353_18780 0.27 +0.5
4,130,646 + AO353_18780 0.28 -1.5
4,130,646 + AO353_18780 0.28 -2.6
4,130,647 - AO353_18780 0.28 -0.5
4,130,775 + AO353_18780 0.43 -0.9
4,130,776 - AO353_18780 0.43 -0.4
4,130,776 - AO353_18780 0.43 -1.7
4,130,776 - AO353_18780 0.43 -0.5
4,130,776 - AO353_18780 0.43 +0.5
4,130,801 - AO353_18780 0.46 -0.1
4,130,844 + AO353_18780 0.51 +0.7
4,130,844 + AO353_18780 0.51 +0.8
4,130,844 + AO353_18780 0.51 -0.3
4,130,844 + AO353_18780 0.51 +0.5
4,130,844 + AO353_18780 0.51 -2.3
4,130,844 + AO353_18780 0.51 +0.0
4,130,845 - AO353_18780 0.52 -1.1
4,130,845 - AO353_18780 0.52 +1.1
4,130,845 - AO353_18780 0.52 -1.1
4,130,845 - AO353_18780 0.52 -1.9
4,130,888 + AO353_18780 0.57 -0.9
4,131,035 + AO353_18780 0.74 -0.1
4,131,098 + AO353_18780 0.82 -1.9
4,131,099 - AO353_18780 0.82 -0.1
4,131,099 - AO353_18780 0.82 -0.5
4,131,243 + -0.9
4,131,243 + -0.1
4,131,243 + +0.9
4,131,243 + -0.5
4,131,244 - -1.0
4,131,244 - -1.1
4,131,244 - +0.0
4,131,244 - +0.9
4,131,259 + +0.7
4,131,259 + +0.7
4,131,269 - +0.3
4,131,269 - -0.7
4,131,295 + -1.3
4,131,296 - -0.6
4,131,326 + AO353_18785 0.11 +0.0
4,131,327 - AO353_18785 0.11 +0.6
4,131,327 - AO353_18785 0.11 -0.3
4,131,333 + AO353_18785 0.12 -0.9
4,131,333 + AO353_18785 0.12 -0.0
4,131,333 + AO353_18785 0.12 -0.3
4,131,333 + AO353_18785 0.12 +0.5
4,131,333 + AO353_18785 0.12 +0.7
4,131,333 + AO353_18785 0.12 +0.8
4,131,333 + AO353_18785 0.12 +1.5
4,131,334 - AO353_18785 0.12 +1.0
4,131,334 - AO353_18785 0.12 +0.4
4,131,334 - AO353_18785 0.12 +0.5
4,131,341 - AO353_18785 0.13 +0.2
4,131,341 - AO353_18785 0.13 +0.0
4,131,430 + AO353_18785 0.25 -1.1
4,131,431 - AO353_18785 0.25 -0.9
4,131,431 - AO353_18785 0.25 -0.5
4,131,431 - AO353_18785 0.25 -0.2
4,131,463 + AO353_18785 0.30 +0.1
4,131,463 + AO353_18785 0.30 +0.3
4,131,463 + AO353_18785 0.30 +0.0
4,131,464 - AO353_18785 0.30 +0.8
4,131,464 - AO353_18785 0.30 +0.4
4,131,464 - AO353_18785 0.30 +1.0
4,131,533 + AO353_18785 0.39 -0.9
4,131,534 - AO353_18785 0.39 +0.6
4,131,543 + AO353_18785 0.40 -0.5
4,131,544 - AO353_18785 0.40 -2.2
4,131,582 + AO353_18785 0.46 +0.0
4,131,583 - AO353_18785 0.46 +2.5
4,131,600 + AO353_18785 0.48 -0.3
4,131,646 + AO353_18785 0.54 +0.8
4,131,646 + AO353_18785 0.54 +1.9
4,131,646 + AO353_18785 0.54 +0.7
4,131,647 - AO353_18785 0.54 -0.3
4,131,647 - AO353_18785 0.54 -0.1
4,131,647 - AO353_18785 0.54 +0.9
4,131,853 + AO353_18785 0.82 +1.5
4,131,853 + AO353_18785 0.82 +2.5
4,131,853 + AO353_18785 0.82 -0.5
4,131,854 - AO353_18785 0.82 +0.3
4,131,854 - AO353_18785 0.82 +0.6
4,131,856 + AO353_18785 0.83 +1.1
4,131,857 - AO353_18785 0.83 +0.5
4,131,857 - AO353_18785 0.83 +1.5
4,131,926 + -0.7
4,131,926 + +0.5
4,131,927 - +0.1
4,131,927 - -1.3
4,131,927 - +0.7
4,131,927 - +1.5
4,131,927 - -0.2
4,132,118 + -0.3
4,132,118 + -0.9
4,132,118 + -0.2
4,132,119 - -0.2
4,132,119 - +0.5
4,132,119 - -0.0
4,132,197 + AO353_18790 0.15 -0.9
4,132,197 + AO353_18790 0.15 -1.0
4,132,197 + AO353_18790 0.15 -0.5
4,132,197 + AO353_18790 0.15 -0.7
4,132,198 - AO353_18790 0.15 -0.4

Or see this region's nucleotide sequence