Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_15925

Experiment: m-Inositol (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntAO353_15915 and AO353_15920 overlap by 13 nucleotidesAO353_15920 and AO353_15925 are separated by 93 nucleotidesAO353_15925 and AO353_15930 are separated by 423 nucleotides AO353_15915: AO353_15915 - aminotransferase, at 3,512,031 to 3,513,179 _15915 AO353_15920: AO353_15920 - carbon-nitrogen hydrolase, at 3,513,167 to 3,513,958 _15920 AO353_15925: AO353_15925 - 2-isopropylmalate synthase, at 3,514,052 to 3,515,731 _15925 AO353_15930: AO353_15930 - peptidase M23, at 3,516,155 to 3,516,976 _15930 Position (kb) 3514 3515 3516Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 3513.082 kb on - strandat 3513.166 kb on + strandat 3513.166 kb on + strandat 3513.166 kb on + strandat 3513.166 kb on + strandat 3513.166 kb on + strandat 3513.166 kb on + strandat 3513.166 kb on + strandat 3513.167 kb on - strandat 3513.167 kb on - strandat 3513.167 kb on - strandat 3513.167 kb on - strandat 3513.167 kb on - strandat 3513.376 kb on + strand, within AO353_15920at 3513.376 kb on + strand, within AO353_15920at 3513.377 kb on - strand, within AO353_15920at 3513.377 kb on - strand, within AO353_15920at 3513.377 kb on - strand, within AO353_15920at 3513.503 kb on + strand, within AO353_15920at 3513.504 kb on - strand, within AO353_15920at 3513.504 kb on - strand, within AO353_15920at 3513.504 kb on - strand, within AO353_15920at 3513.504 kb on - strand, within AO353_15920at 3513.548 kb on + strand, within AO353_15920at 3513.548 kb on + strand, within AO353_15920at 3513.548 kb on + strand, within AO353_15920at 3513.548 kb on + strand, within AO353_15920at 3513.548 kb on + strand, within AO353_15920at 3513.548 kb on + strand, within AO353_15920at 3513.548 kb on + strand, within AO353_15920at 3513.548 kb on + strand, within AO353_15920at 3513.549 kb on - strand, within AO353_15920at 3513.549 kb on - strand, within AO353_15920at 3513.549 kb on - strand, within AO353_15920at 3513.549 kb on - strand, within AO353_15920at 3513.549 kb on - strand, within AO353_15920at 3513.671 kb on + strand, within AO353_15920at 3513.671 kb on + strand, within AO353_15920at 3513.672 kb on - strand, within AO353_15920at 3513.672 kb on - strand, within AO353_15920at 3513.749 kb on + strand, within AO353_15920at 3513.749 kb on + strand, within AO353_15920at 3513.750 kb on - strand, within AO353_15920at 3513.750 kb on - strand, within AO353_15920at 3513.750 kb on - strand, within AO353_15920at 3513.750 kb on - strand, within AO353_15920at 3513.750 kb on - strand, within AO353_15920at 3513.750 kb on - strand, within AO353_15920at 3513.797 kb on + strand, within AO353_15920at 3513.797 kb on + strand, within AO353_15920at 3513.797 kb on + strand, within AO353_15920at 3513.797 kb on + strand, within AO353_15920at 3513.797 kb on + strand, within AO353_15920at 3513.798 kb on - strand, within AO353_15920at 3513.798 kb on - strand, within AO353_15920at 3513.798 kb on - strand, within AO353_15920at 3513.798 kb on - strand, within AO353_15920at 3513.798 kb on - strand, within AO353_15920at 3513.799 kb on + strand, within AO353_15920at 3513.800 kb on - strand, within AO353_15920at 3513.867 kb on + strand, within AO353_15920at 3513.868 kb on - strand, within AO353_15920at 3513.868 kb on - strand, within AO353_15920at 3513.996 kb on + strandat 3513.997 kb on - strandat 3513.997 kb on - strandat 3514.053 kb on + strandat 3514.188 kb on + strandat 3514.188 kb on + strandat 3514.188 kb on + strandat 3514.188 kb on + strandat 3514.188 kb on + strandat 3514.189 kb on - strandat 3514.189 kb on - strandat 3514.189 kb on - strandat 3514.236 kb on + strand, within AO353_15925at 3514.236 kb on + strand, within AO353_15925at 3514.236 kb on + strand, within AO353_15925at 3514.236 kb on + strand, within AO353_15925at 3514.236 kb on + strand, within AO353_15925at 3514.236 kb on + strand, within AO353_15925at 3514.236 kb on + strand, within AO353_15925at 3514.236 kb on + strand, within AO353_15925at 3514.237 kb on - strand, within AO353_15925at 3514.237 kb on - strand, within AO353_15925at 3514.237 kb on - strand, within AO353_15925at 3514.237 kb on - strand, within AO353_15925at 3514.364 kb on - strand, within AO353_15925at 3514.364 kb on - strand, within AO353_15925at 3514.425 kb on + strand, within AO353_15925at 3514.425 kb on + strand, within AO353_15925at 3514.425 kb on + strand, within AO353_15925at 3514.426 kb on - strand, within AO353_15925at 3514.426 kb on - strand, within AO353_15925at 3514.426 kb on - strand, within AO353_15925at 3514.426 kb on - strand, within AO353_15925at 3514.496 kb on + strand, within AO353_15925at 3514.497 kb on - strand, within AO353_15925at 3514.497 kb on - strand, within AO353_15925at 3514.497 kb on - strand, within AO353_15925at 3514.497 kb on - strand, within AO353_15925at 3514.497 kb on - strand, within AO353_15925at 3514.497 kb on - strand, within AO353_15925at 3514.545 kb on + strand, within AO353_15925at 3514.546 kb on - strand, within AO353_15925at 3514.546 kb on - strand, within AO353_15925at 3514.546 kb on - strand, within AO353_15925at 3514.563 kb on + strand, within AO353_15925at 3514.563 kb on + strand, within AO353_15925at 3514.563 kb on + strand, within AO353_15925at 3514.564 kb on - strand, within AO353_15925at 3514.564 kb on - strand, within AO353_15925at 3514.564 kb on - strand, within AO353_15925at 3514.614 kb on + strand, within AO353_15925at 3514.614 kb on + strand, within AO353_15925at 3514.615 kb on - strand, within AO353_15925at 3514.615 kb on - strand, within AO353_15925at 3514.615 kb on - strand, within AO353_15925at 3514.650 kb on + strand, within AO353_15925at 3514.651 kb on - strand, within AO353_15925at 3514.651 kb on - strand, within AO353_15925at 3514.651 kb on - strand, within AO353_15925at 3514.651 kb on - strand, within AO353_15925at 3514.752 kb on + strand, within AO353_15925at 3514.753 kb on - strand, within AO353_15925at 3514.854 kb on + strand, within AO353_15925at 3514.854 kb on + strand, within AO353_15925at 3514.854 kb on + strand, within AO353_15925at 3514.854 kb on + strand, within AO353_15925at 3514.854 kb on + strand, within AO353_15925at 3514.855 kb on - strand, within AO353_15925at 3514.855 kb on - strand, within AO353_15925at 3514.976 kb on - strand, within AO353_15925at 3515.061 kb on + strand, within AO353_15925at 3515.061 kb on + strand, within AO353_15925at 3515.061 kb on + strand, within AO353_15925at 3515.061 kb on + strand, within AO353_15925at 3515.061 kb on + strand, within AO353_15925at 3515.061 kb on + strand, within AO353_15925at 3515.061 kb on + strand, within AO353_15925at 3515.062 kb on - strand, within AO353_15925at 3515.062 kb on - strand, within AO353_15925at 3515.062 kb on - strand, within AO353_15925at 3515.062 kb on - strand, within AO353_15925at 3515.062 kb on - strand, within AO353_15925at 3515.062 kb on - strand, within AO353_15925at 3515.062 kb on - strand, within AO353_15925at 3515.062 kb on - strand, within AO353_15925at 3515.062 kb on - strand, within AO353_15925at 3515.062 kb on - strand, within AO353_15925at 3515.062 kb on - strand, within AO353_15925at 3515.074 kb on + strand, within AO353_15925at 3515.244 kb on + strand, within AO353_15925at 3515.244 kb on + strand, within AO353_15925at 3515.244 kb on + strand, within AO353_15925at 3515.245 kb on - strand, within AO353_15925at 3515.245 kb on - strand, within AO353_15925at 3515.245 kb on - strand, within AO353_15925at 3515.343 kb on + strand, within AO353_15925at 3515.343 kb on + strandat 3515.344 kb on - strand, within AO353_15925at 3515.344 kb on - strand, within AO353_15925at 3515.344 kb on - strand, within AO353_15925at 3515.344 kb on - strand, within AO353_15925at 3515.344 kb on - strand, within AO353_15925at 3515.344 kb on - strand, within AO353_15925at 3515.344 kb on - strand, within AO353_15925at 3515.344 kb on - strand, within AO353_15925at 3515.431 kb on + strand, within AO353_15925at 3515.700 kb on + strandat 3515.701 kb on - strandat 3515.701 kb on - strandat 3515.743 kb on + strandat 3515.743 kb on + strandat 3515.744 kb on - strandat 3515.796 kb on + strandat 3515.797 kb on - strandat 3516.006 kb on + strandat 3516.006 kb on + strandat 3516.007 kb on - strandat 3516.016 kb on + strandat 3516.048 kb on + strandat 3516.048 kb on + strandat 3516.048 kb on + strandat 3516.049 kb on - strandat 3516.093 kb on + strandat 3516.093 kb on + strandat 3516.093 kb on + strandat 3516.093 kb on + strandat 3516.093 kb on + strandat 3516.146 kb on + strandat 3516.156 kb on + strandat 3516.156 kb on + strandat 3516.156 kb on + strandat 3516.156 kb on + strandat 3516.156 kb on + strandat 3516.156 kb on + strandat 3516.157 kb on - strandat 3516.157 kb on - strandat 3516.157 kb on - strandat 3516.157 kb on - strandat 3516.157 kb on - strandat 3516.157 kb on - strandat 3516.157 kb on - strandat 3516.157 kb on - strandat 3516.157 kb on - strandat 3516.157 kb on - strandat 3516.269 kb on + strand, within AO353_15930at 3516.269 kb on + strand, within AO353_15930at 3516.270 kb on - strand, within AO353_15930at 3516.338 kb on - strand, within AO353_15930at 3516.363 kb on - strand, within AO353_15930at 3516.384 kb on + strand, within AO353_15930at 3516.384 kb on + strand, within AO353_15930at 3516.385 kb on - strand, within AO353_15930at 3516.385 kb on - strand, within AO353_15930at 3516.385 kb on - strand, within AO353_15930at 3516.385 kb on - strand, within AO353_15930at 3516.684 kb on + strand, within AO353_15930at 3516.685 kb on - strand, within AO353_15930

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction m-Inositol (C)
remove
3,513,082 - +1.7
3,513,166 + -0.9
3,513,166 + -0.6
3,513,166 + +0.5
3,513,166 + -1.1
3,513,166 + +0.5
3,513,166 + -1.1
3,513,166 + -1.0
3,513,167 - +0.1
3,513,167 - +1.1
3,513,167 - -1.8
3,513,167 - +3.0
3,513,167 - -1.8
3,513,376 + AO353_15920 0.26 -1.2
3,513,376 + AO353_15920 0.26 -0.5
3,513,377 - AO353_15920 0.27 -0.2
3,513,377 - AO353_15920 0.27 +0.6
3,513,377 - AO353_15920 0.27 +0.7
3,513,503 + AO353_15920 0.42 +1.0
3,513,504 - AO353_15920 0.43 +1.2
3,513,504 - AO353_15920 0.43 -1.5
3,513,504 - AO353_15920 0.43 -0.1
3,513,504 - AO353_15920 0.43 -1.4
3,513,548 + AO353_15920 0.48 +1.1
3,513,548 + AO353_15920 0.48 -0.2
3,513,548 + AO353_15920 0.48 -2.1
3,513,548 + AO353_15920 0.48 +0.5
3,513,548 + AO353_15920 0.48 -0.7
3,513,548 + AO353_15920 0.48 -0.6
3,513,548 + AO353_15920 0.48 -0.1
3,513,548 + AO353_15920 0.48 +2.1
3,513,549 - AO353_15920 0.48 +0.2
3,513,549 - AO353_15920 0.48 +0.3
3,513,549 - AO353_15920 0.48 +0.1
3,513,549 - AO353_15920 0.48 -0.4
3,513,549 - AO353_15920 0.48 -1.8
3,513,671 + AO353_15920 0.64 -2.4
3,513,671 + AO353_15920 0.64 -0.9
3,513,672 - AO353_15920 0.64 +0.1
3,513,672 - AO353_15920 0.64 -2.7
3,513,749 + AO353_15920 0.73 -1.8
3,513,749 + AO353_15920 0.73 -0.3
3,513,750 - AO353_15920 0.74 +0.4
3,513,750 - AO353_15920 0.74 +0.5
3,513,750 - AO353_15920 0.74 +0.4
3,513,750 - AO353_15920 0.74 -2.6
3,513,750 - AO353_15920 0.74 -0.5
3,513,750 - AO353_15920 0.74 -1.8
3,513,797 + AO353_15920 0.80 -0.9
3,513,797 + AO353_15920 0.80 -0.1
3,513,797 + AO353_15920 0.80 -0.7
3,513,797 + AO353_15920 0.80 -1.1
3,513,797 + AO353_15920 0.80 -1.4
3,513,798 - AO353_15920 0.80 -2.9
3,513,798 - AO353_15920 0.80 -1.6
3,513,798 - AO353_15920 0.80 -1.0
3,513,798 - AO353_15920 0.80 -1.6
3,513,798 - AO353_15920 0.80 -1.5
3,513,799 + AO353_15920 0.80 -0.2
3,513,800 - AO353_15920 0.80 -0.8
3,513,867 + AO353_15920 0.88 -1.0
3,513,868 - AO353_15920 0.89 -0.0
3,513,868 - AO353_15920 0.89 -1.9
3,513,996 + -0.8
3,513,997 - -1.1
3,513,997 - -0.7
3,514,053 + -0.7
3,514,188 + -1.3
3,514,188 + -2.6
3,514,188 + -1.7
3,514,188 + -0.8
3,514,188 + +1.1
3,514,189 - -3.0
3,514,189 - -4.1
3,514,189 - -2.6
3,514,236 + AO353_15925 0.11 -0.8
3,514,236 + AO353_15925 0.11 +0.1
3,514,236 + AO353_15925 0.11 -1.2
3,514,236 + AO353_15925 0.11 -0.3
3,514,236 + AO353_15925 0.11 -0.3
3,514,236 + AO353_15925 0.11 +0.9
3,514,236 + AO353_15925 0.11 +0.1
3,514,236 + AO353_15925 0.11 -0.9
3,514,237 - AO353_15925 0.11 +0.4
3,514,237 - AO353_15925 0.11 +0.1
3,514,237 - AO353_15925 0.11 -0.5
3,514,237 - AO353_15925 0.11 -1.8
3,514,364 - AO353_15925 0.19 +1.7
3,514,364 - AO353_15925 0.19 -0.3
3,514,425 + AO353_15925 0.22 +0.1
3,514,425 + AO353_15925 0.22 -1.6
3,514,425 + AO353_15925 0.22 -1.5
3,514,426 - AO353_15925 0.22 -1.4
3,514,426 - AO353_15925 0.22 -1.5
3,514,426 - AO353_15925 0.22 -1.5
3,514,426 - AO353_15925 0.22 -1.6
3,514,496 + AO353_15925 0.26 -2.4
3,514,497 - AO353_15925 0.26 -3.6
3,514,497 - AO353_15925 0.26 -0.9
3,514,497 - AO353_15925 0.26 +0.1
3,514,497 - AO353_15925 0.26 -1.3
3,514,497 - AO353_15925 0.26 -3.8
3,514,497 - AO353_15925 0.26 -1.6
3,514,545 + AO353_15925 0.29 -4.4
3,514,546 - AO353_15925 0.29 -2.2
3,514,546 - AO353_15925 0.29 -3.0
3,514,546 - AO353_15925 0.29 -2.2
3,514,563 + AO353_15925 0.30 -2.4
3,514,563 + AO353_15925 0.30 -0.6
3,514,563 + AO353_15925 0.30 -1.1
3,514,564 - AO353_15925 0.30 -1.5
3,514,564 - AO353_15925 0.30 -2.4
3,514,564 - AO353_15925 0.30 -3.0
3,514,614 + AO353_15925 0.33 -3.0
3,514,614 + AO353_15925 0.33 -1.3
3,514,615 - AO353_15925 0.34 -1.9
3,514,615 - AO353_15925 0.34 -1.8
3,514,615 - AO353_15925 0.34 -1.6
3,514,650 + AO353_15925 0.36 +0.4
3,514,651 - AO353_15925 0.36 -0.9
3,514,651 - AO353_15925 0.36 -2.1
3,514,651 - AO353_15925 0.36 -1.9
3,514,651 - AO353_15925 0.36 +0.7
3,514,752 + AO353_15925 0.42 -3.1
3,514,753 - AO353_15925 0.42 -2.9
3,514,854 + AO353_15925 0.48 -2.5
3,514,854 + AO353_15925 0.48 -2.9
3,514,854 + AO353_15925 0.48 -0.8
3,514,854 + AO353_15925 0.48 -2.0
3,514,854 + AO353_15925 0.48 -1.6
3,514,855 - AO353_15925 0.48 -1.5
3,514,855 - AO353_15925 0.48 -1.5
3,514,976 - AO353_15925 0.55 -1.3
3,515,061 + AO353_15925 0.60 -1.6
3,515,061 + AO353_15925 0.60 -3.5
3,515,061 + AO353_15925 0.60 -0.6
3,515,061 + AO353_15925 0.60 -3.3
3,515,061 + AO353_15925 0.60 -1.9
3,515,061 + AO353_15925 0.60 -1.3
3,515,061 + AO353_15925 0.60 -3.7
3,515,062 - AO353_15925 0.60 -1.5
3,515,062 - AO353_15925 0.60 -2.6
3,515,062 - AO353_15925 0.60 -0.6
3,515,062 - AO353_15925 0.60 -2.2
3,515,062 - AO353_15925 0.60 -2.7
3,515,062 - AO353_15925 0.60 -2.8
3,515,062 - AO353_15925 0.60 -1.7
3,515,062 - AO353_15925 0.60 -1.4
3,515,062 - AO353_15925 0.60 -2.2
3,515,062 - AO353_15925 0.60 -1.8
3,515,062 - AO353_15925 0.60 -1.6
3,515,074 + AO353_15925 0.61 -0.3
3,515,244 + AO353_15925 0.71 -1.3
3,515,244 + AO353_15925 0.71 -2.1
3,515,244 + AO353_15925 0.71 -0.3
3,515,245 - AO353_15925 0.71 -2.0
3,515,245 - AO353_15925 0.71 -3.1
3,515,245 - AO353_15925 0.71 -1.6
3,515,343 + AO353_15925 0.77 -3.1
3,515,343 + +0.7
3,515,344 - AO353_15925 0.77 -1.5
3,515,344 - AO353_15925 0.77 -2.6
3,515,344 - AO353_15925 0.77 +1.7
3,515,344 - AO353_15925 0.77 -1.3
3,515,344 - AO353_15925 0.77 -2.2
3,515,344 - AO353_15925 0.77 -1.9
3,515,344 - AO353_15925 0.77 -0.7
3,515,344 - AO353_15925 0.77 +0.6
3,515,431 + AO353_15925 0.82 -1.3
3,515,700 + -1.5
3,515,701 - -2.2
3,515,701 - -3.1
3,515,743 + -3.4
3,515,743 + -1.4
3,515,744 - -0.3
3,515,796 + -1.1
3,515,797 - -2.1
3,516,006 + +0.4
3,516,006 + -1.4
3,516,007 - -0.0
3,516,016 + +2.3
3,516,048 + -0.9
3,516,048 + +1.7
3,516,048 + +1.0
3,516,049 - +1.3
3,516,093 + +0.3
3,516,093 + +0.9
3,516,093 + +0.4
3,516,093 + -1.6
3,516,093 + +0.8
3,516,146 + -0.3
3,516,156 + -0.1
3,516,156 + +0.6
3,516,156 + +0.7
3,516,156 + +0.7
3,516,156 + -0.6
3,516,156 + -0.9
3,516,157 - -0.5
3,516,157 - -0.2
3,516,157 - +0.8
3,516,157 - +0.1
3,516,157 - +0.1
3,516,157 - -0.4
3,516,157 - +0.6
3,516,157 - -0.1
3,516,157 - -1.1
3,516,157 - -0.2
3,516,269 + AO353_15930 0.14 +0.1
3,516,269 + AO353_15930 0.14 +0.1
3,516,270 - AO353_15930 0.14 -0.7
3,516,338 - AO353_15930 0.22 +0.4
3,516,363 - AO353_15930 0.25 -0.0
3,516,384 + AO353_15930 0.28 -1.3
3,516,384 + AO353_15930 0.28 -1.4
3,516,385 - AO353_15930 0.28 +3.5
3,516,385 - AO353_15930 0.28 -1.8
3,516,385 - AO353_15930 0.28 +0.4
3,516,385 - AO353_15930 0.28 -0.4
3,516,684 + AO353_15930 0.64 +1.0
3,516,685 - AO353_15930 0.64 -0.4

Or see this region's nucleotide sequence