Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_15830

Experiment: m-Inositol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_15820 and AO353_15825 are separated by 2 nucleotidesAO353_15825 and AO353_15830 are separated by 189 nucleotidesAO353_15830 and AO353_15835 are separated by 50 nucleotides AO353_15820: AO353_15820 - RNA methyltransferase, at 3,495,046 to 3,495,816 _15820 AO353_15825: AO353_15825 - serine acetyltransferase, at 3,495,819 to 3,496,595 _15825 AO353_15830: AO353_15830 - transcriptional regulator, at 3,496,785 to 3,497,276 _15830 AO353_15835: AO353_15835 - cysteine desulfurase IscS, at 3,497,327 to 3,498,541 _15835 Position (kb) 3496 3497 3498Strain fitness (log2 ratio) -2 -1 0 1at 3495.801 kb on + strandat 3495.802 kb on - strandat 3495.802 kb on - strandat 3495.802 kb on - strandat 3495.802 kb on - strandat 3495.842 kb on + strandat 3495.842 kb on + strandat 3495.843 kb on - strandat 3495.878 kb on + strandat 3495.878 kb on + strandat 3495.878 kb on + strandat 3495.878 kb on + strandat 3495.878 kb on + strandat 3495.878 kb on + strandat 3495.878 kb on + strandat 3495.879 kb on - strandat 3495.879 kb on - strandat 3495.879 kb on - strandat 3496.055 kb on + strand, within AO353_15825at 3496.056 kb on - strand, within AO353_15825at 3496.056 kb on - strand, within AO353_15825at 3496.119 kb on + strand, within AO353_15825at 3496.120 kb on - strand, within AO353_15825at 3496.189 kb on + strand, within AO353_15825at 3496.190 kb on - strand, within AO353_15825at 3496.190 kb on - strand, within AO353_15825at 3496.390 kb on - strand, within AO353_15825at 3496.515 kb on + strand, within AO353_15825at 3496.516 kb on - strand, within AO353_15825at 3496.593 kb on + strandat 3496.651 kb on + strandat 3496.651 kb on + strandat 3496.651 kb on + strandat 3496.651 kb on + strandat 3496.651 kb on + strandat 3496.651 kb on + strandat 3496.651 kb on + strandat 3496.651 kb on + strandat 3496.651 kb on + strandat 3496.651 kb on + strandat 3496.652 kb on - strandat 3496.652 kb on - strandat 3496.652 kb on - strandat 3496.668 kb on + strandat 3496.668 kb on + strandat 3496.668 kb on + strandat 3496.668 kb on + strandat 3496.668 kb on + strandat 3496.668 kb on + strandat 3496.669 kb on - strandat 3496.669 kb on - strandat 3496.669 kb on - strandat 3496.669 kb on - strandat 3496.670 kb on + strandat 3496.670 kb on + strandat 3496.670 kb on + strandat 3496.670 kb on + strandat 3496.671 kb on - strandat 3496.671 kb on - strandat 3496.671 kb on - strandat 3496.776 kb on + strandat 3496.776 kb on + strandat 3496.776 kb on + strandat 3496.796 kb on + strandat 3496.796 kb on + strandat 3496.905 kb on + strand, within AO353_15830at 3496.905 kb on + strand, within AO353_15830at 3496.905 kb on + strand, within AO353_15830at 3496.905 kb on + strand, within AO353_15830at 3497.032 kb on + strand, within AO353_15830

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Per-strain Table

Position Strand Gene LocusTag Fraction m-Inositol (C)
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3,495,801 + +0.7
3,495,802 - -0.3
3,495,802 - +0.6
3,495,802 - -0.9
3,495,802 - -0.8
3,495,842 + -1.7
3,495,842 + -0.2
3,495,843 - -1.5
3,495,878 + +0.5
3,495,878 + -0.3
3,495,878 + +0.3
3,495,878 + -0.1
3,495,878 + +0.8
3,495,878 + -0.0
3,495,878 + +0.6
3,495,879 - +1.2
3,495,879 - -0.1
3,495,879 - -0.2
3,496,055 + AO353_15825 0.30 +0.1
3,496,056 - AO353_15825 0.31 -0.3
3,496,056 - AO353_15825 0.31 +0.7
3,496,119 + AO353_15825 0.39 +1.1
3,496,120 - AO353_15825 0.39 +0.8
3,496,189 + AO353_15825 0.48 +0.5
3,496,190 - AO353_15825 0.48 -0.3
3,496,190 - AO353_15825 0.48 +0.7
3,496,390 - AO353_15825 0.73 +1.2
3,496,515 + AO353_15825 0.90 -0.6
3,496,516 - AO353_15825 0.90 +0.5
3,496,593 + -0.5
3,496,651 + -0.6
3,496,651 + -0.5
3,496,651 + -0.5
3,496,651 + +0.7
3,496,651 + -1.4
3,496,651 + -0.4
3,496,651 + +0.4
3,496,651 + -0.5
3,496,651 + +0.8
3,496,651 + +0.1
3,496,652 - -0.2
3,496,652 - -0.8
3,496,652 - +0.2
3,496,668 + -0.4
3,496,668 + -1.8
3,496,668 + +0.1
3,496,668 + -1.9
3,496,668 + +0.5
3,496,668 + -0.9
3,496,669 - -0.7
3,496,669 - -0.9
3,496,669 - -0.5
3,496,669 - +0.7
3,496,670 + +0.2
3,496,670 + +0.0
3,496,670 + -0.5
3,496,670 + -0.5
3,496,671 - -0.8
3,496,671 - +0.4
3,496,671 - -0.2
3,496,776 + +0.2
3,496,776 + -2.6
3,496,776 + -1.2
3,496,796 + -0.1
3,496,796 + -0.4
3,496,905 + AO353_15830 0.24 -1.5
3,496,905 + AO353_15830 0.24 -0.4
3,496,905 + AO353_15830 0.24 -0.9
3,496,905 + AO353_15830 0.24 +0.4
3,497,032 + AO353_15830 0.50 -1.7

Or see this region's nucleotide sequence