Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_14115

Experiment: m-Inositol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_14110 and AO353_14115 are separated by 123 nucleotidesAO353_14115 and AO353_14120 are separated by 11 nucleotidesAO353_14120 and AO353_14125 are separated by 120 nucleotides AO353_14110: AO353_14110 - GTPase CgtA, at 3,134,515 to 3,135,738 _14110 AO353_14115: AO353_14115 - gamma-glutamyl kinase, at 3,135,862 to 3,136,980 _14115 AO353_14120: AO353_14120 - hypothetical protein, at 3,136,992 to 3,137,456 _14120 AO353_14125: AO353_14125 - 30S ribosomal protein S20, at 3,137,577 to 3,137,855 _14125 Position (kb) 3135 3136 3137Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 3135.724 kb on + strandat 3135.724 kb on + strandat 3135.724 kb on + strandat 3135.725 kb on - strandat 3135.725 kb on - strandat 3135.749 kb on + strandat 3135.749 kb on + strandat 3135.750 kb on - strandat 3135.755 kb on + strandat 3135.756 kb on - strandat 3135.785 kb on + strandat 3135.786 kb on - strandat 3135.800 kb on - strandat 3135.809 kb on + strandat 3135.848 kb on + strandat 3135.848 kb on + strandat 3135.848 kb on + strandat 3135.848 kb on + strandat 3135.848 kb on + strandat 3135.848 kb on + strandat 3135.848 kb on + strandat 3135.848 kb on + strandat 3135.848 kb on + strandat 3135.848 kb on + strandat 3135.848 kb on + strandat 3135.848 kb on + strandat 3135.848 kb on + strandat 3135.849 kb on - strandat 3135.849 kb on - strandat 3135.849 kb on - strandat 3136.041 kb on + strand, within AO353_14115at 3136.041 kb on + strand, within AO353_14115at 3136.041 kb on + strand, within AO353_14115at 3136.041 kb on + strand, within AO353_14115at 3136.042 kb on - strand, within AO353_14115at 3136.042 kb on - strand, within AO353_14115at 3136.284 kb on + strand, within AO353_14115at 3136.439 kb on - strand, within AO353_14115at 3136.752 kb on + strand, within AO353_14115at 3136.752 kb on + strand, within AO353_14115at 3136.752 kb on + strand, within AO353_14115at 3136.752 kb on + strand, within AO353_14115at 3136.752 kb on + strand, within AO353_14115at 3136.752 kb on + strand, within AO353_14115at 3136.752 kb on + strand, within AO353_14115at 3136.753 kb on - strand, within AO353_14115at 3136.753 kb on - strand, within AO353_14115at 3136.753 kb on - strand, within AO353_14115at 3136.753 kb on - strand, within AO353_14115at 3136.864 kb on + strandat 3136.864 kb on + strand, within AO353_14115at 3136.864 kb on + strand, within AO353_14115at 3136.864 kb on + strand, within AO353_14115at 3136.864 kb on + strand, within AO353_14115at 3136.864 kb on + strand, within AO353_14115at 3136.864 kb on + strand, within AO353_14115at 3136.864 kb on + strand, within AO353_14115at 3136.864 kb on + strand, within AO353_14115at 3136.864 kb on + strand, within AO353_14115at 3136.864 kb on + strand, within AO353_14115at 3136.864 kb on + strand, within AO353_14115at 3136.865 kb on - strand, within AO353_14115at 3136.865 kb on - strand, within AO353_14115at 3136.865 kb on - strand, within AO353_14115at 3136.865 kb on - strand, within AO353_14115at 3136.865 kb on - strand, within AO353_14115at 3136.865 kb on - strand, within AO353_14115at 3136.865 kb on - strand, within AO353_14115at 3136.865 kb on - strand, within AO353_14115at 3136.865 kb on - strand, within AO353_14115at 3136.865 kb on - strand, within AO353_14115at 3136.930 kb on + strandat 3136.930 kb on + strandat 3136.930 kb on + strandat 3136.930 kb on + strandat 3136.930 kb on + strandat 3136.930 kb on + strandat 3136.930 kb on + strandat 3136.930 kb on + strandat 3136.931 kb on - strandat 3136.931 kb on - strandat 3136.931 kb on - strandat 3136.979 kb on - strandat 3136.979 kb on - strandat 3137.068 kb on + strand, within AO353_14120at 3137.069 kb on - strand, within AO353_14120at 3137.069 kb on - strand, within AO353_14120at 3137.154 kb on + strand, within AO353_14120at 3137.154 kb on + strand, within AO353_14120at 3137.154 kb on + strand, within AO353_14120at 3137.155 kb on - strand, within AO353_14120at 3137.367 kb on + strand, within AO353_14120at 3137.367 kb on + strand, within AO353_14120at 3137.367 kb on + strand, within AO353_14120at 3137.368 kb on - strand, within AO353_14120at 3137.368 kb on - strand, within AO353_14120at 3137.368 kb on - strand, within AO353_14120at 3137.377 kb on - strand, within AO353_14120at 3137.377 kb on - strand, within AO353_14120at 3137.454 kb on + strandat 3137.454 kb on + strandat 3137.534 kb on + strandat 3137.972 kb on - strandat 3137.972 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m-Inositol (C)
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3,135,724 + -0.4
3,135,724 + -0.4
3,135,724 + -1.0
3,135,725 - +0.6
3,135,725 - +0.4
3,135,749 + -0.7
3,135,749 + +0.2
3,135,750 - +0.6
3,135,755 + -2.0
3,135,756 - +0.2
3,135,785 + +0.4
3,135,786 - -1.6
3,135,800 - -1.6
3,135,809 + -0.7
3,135,848 + +1.8
3,135,848 + -0.0
3,135,848 + +0.9
3,135,848 + -1.7
3,135,848 + -1.0
3,135,848 + +1.2
3,135,848 + -0.2
3,135,848 + +0.2
3,135,848 + +0.6
3,135,848 + -0.5
3,135,848 + +1.2
3,135,848 + +0.0
3,135,848 + -2.8
3,135,849 - -2.8
3,135,849 - -2.3
3,135,849 - -1.6
3,136,041 + AO353_14115 0.16 -0.8
3,136,041 + AO353_14115 0.16 -1.6
3,136,041 + AO353_14115 0.16 -0.6
3,136,041 + AO353_14115 0.16 -1.2
3,136,042 - AO353_14115 0.16 -1.7
3,136,042 - AO353_14115 0.16 -0.6
3,136,284 + AO353_14115 0.38 -1.0
3,136,439 - AO353_14115 0.52 -1.4
3,136,752 + AO353_14115 0.80 -2.0
3,136,752 + AO353_14115 0.80 +1.0
3,136,752 + AO353_14115 0.80 -1.4
3,136,752 + AO353_14115 0.80 -3.4
3,136,752 + AO353_14115 0.80 -3.7
3,136,752 + AO353_14115 0.80 -1.7
3,136,752 + AO353_14115 0.80 -0.6
3,136,753 - AO353_14115 0.80 -1.4
3,136,753 - AO353_14115 0.80 +3.3
3,136,753 - AO353_14115 0.80 -0.6
3,136,753 - AO353_14115 0.80 -1.7
3,136,864 + -0.2
3,136,864 + AO353_14115 0.90 -0.6
3,136,864 + AO353_14115 0.90 -1.2
3,136,864 + AO353_14115 0.90 -0.8
3,136,864 + AO353_14115 0.90 -0.6
3,136,864 + AO353_14115 0.90 -1.7
3,136,864 + AO353_14115 0.90 +0.8
3,136,864 + AO353_14115 0.90 -1.9
3,136,864 + AO353_14115 0.90 -2.0
3,136,864 + AO353_14115 0.90 -1.6
3,136,864 + AO353_14115 0.90 -0.2
3,136,864 + AO353_14115 0.90 -1.4
3,136,865 - AO353_14115 0.90 -0.8
3,136,865 - AO353_14115 0.90 -0.6
3,136,865 - AO353_14115 0.90 -0.2
3,136,865 - AO353_14115 0.90 +0.4
3,136,865 - AO353_14115 0.90 -1.4
3,136,865 - AO353_14115 0.90 -2.2
3,136,865 - AO353_14115 0.90 -1.6
3,136,865 - AO353_14115 0.90 -2.0
3,136,865 - AO353_14115 0.90 +0.2
3,136,865 - AO353_14115 0.90 -2.4
3,136,930 + +1.8
3,136,930 + -1.7
3,136,930 + -0.6
3,136,930 + -2.1
3,136,930 + -1.2
3,136,930 + -3.4
3,136,930 + -1.8
3,136,930 + -1.4
3,136,931 - -2.5
3,136,931 - -1.6
3,136,931 - -2.1
3,136,979 - +1.3
3,136,979 - -0.2
3,137,068 + AO353_14120 0.16 -0.6
3,137,069 - AO353_14120 0.17 -0.0
3,137,069 - AO353_14120 0.17 +0.2
3,137,154 + AO353_14120 0.35 -1.2
3,137,154 + AO353_14120 0.35 -0.0
3,137,154 + AO353_14120 0.35 -0.7
3,137,155 - AO353_14120 0.35 -0.5
3,137,367 + AO353_14120 0.81 +0.3
3,137,367 + AO353_14120 0.81 -0.6
3,137,367 + AO353_14120 0.81 +2.6
3,137,368 - AO353_14120 0.81 -1.3
3,137,368 - AO353_14120 0.81 -1.0
3,137,368 - AO353_14120 0.81 +0.4
3,137,377 - AO353_14120 0.83 -0.2
3,137,377 - AO353_14120 0.83 +1.1
3,137,454 + +0.3
3,137,454 + -0.2
3,137,534 + -1.0
3,137,972 - +0.2
3,137,972 - -0.4

Or see this region's nucleotide sequence