Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_13165

Experiment: m-Inositol (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntAO353_13160 and AO353_13165 are separated by 317 nucleotidesAO353_13165 and AO353_13170 are separated by 54 nucleotides AO353_13160: AO353_13160 - membrane protease HflC, at 2,916,425 to 2,917,294 _13160 AO353_13165: AO353_13165 - ATP phosphoribosyltransferase regulatory subunit, at 2,917,612 to 2,918,799 _13165 AO353_13170: AO353_13170 - adenylosuccinate synthetase, at 2,918,854 to 2,920,146 _13170 Position (kb) 2917 2918 2919Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 2916.690 kb on - strand, within AO353_13160at 2916.690 kb on - strand, within AO353_13160at 2917.092 kb on - strand, within AO353_13160at 2917.178 kb on + strand, within AO353_13160at 2917.188 kb on - strand, within AO353_13160at 2917.188 kb on - strand, within AO353_13160at 2917.369 kb on + strandat 2917.369 kb on + strandat 2917.531 kb on + strandat 2917.531 kb on + strandat 2917.531 kb on + strandat 2917.531 kb on + strandat 2917.531 kb on + strandat 2917.531 kb on + strandat 2917.531 kb on + strandat 2917.531 kb on + strandat 2917.531 kb on + strandat 2917.531 kb on + strandat 2917.531 kb on + strandat 2917.537 kb on + strandat 2917.537 kb on + strandat 2917.610 kb on + strandat 2917.658 kb on + strandat 2917.658 kb on + strandat 2917.658 kb on + strandat 2917.658 kb on + strandat 2917.658 kb on + strandat 2917.658 kb on + strandat 2917.729 kb on + strandat 2917.863 kb on + strand, within AO353_13165at 2917.863 kb on + strand, within AO353_13165at 2918.005 kb on + strand, within AO353_13165at 2918.005 kb on + strand, within AO353_13165at 2918.005 kb on + strand, within AO353_13165at 2918.116 kb on + strand, within AO353_13165at 2918.116 kb on + strand, within AO353_13165at 2918.116 kb on + strand, within AO353_13165at 2918.116 kb on + strand, within AO353_13165at 2918.116 kb on + strand, within AO353_13165at 2918.116 kb on + strand, within AO353_13165at 2918.116 kb on + strand, within AO353_13165at 2918.208 kb on + strand, within AO353_13165at 2918.208 kb on + strand, within AO353_13165at 2918.208 kb on + strand, within AO353_13165at 2918.208 kb on + strand, within AO353_13165at 2918.208 kb on + strand, within AO353_13165at 2918.401 kb on + strand, within AO353_13165at 2918.434 kb on + strand, within AO353_13165at 2918.459 kb on + strand, within AO353_13165at 2918.616 kb on + strand, within AO353_13165at 2918.780 kb on + strandat 2918.780 kb on + strandat 2918.780 kb on + strandat 2918.780 kb on + strandat 2918.780 kb on + strandat 2918.780 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction m-Inositol (C)
remove
2,916,690 - AO353_13160 0.30 +2.8
2,916,690 - AO353_13160 0.30 -0.2
2,917,092 - AO353_13160 0.77 -2.3
2,917,178 + AO353_13160 0.87 -1.0
2,917,188 - AO353_13160 0.88 -0.5
2,917,188 - AO353_13160 0.88 +3.8
2,917,369 + +0.4
2,917,369 + +0.0
2,917,531 + +1.1
2,917,531 + -0.3
2,917,531 + -0.5
2,917,531 + -0.2
2,917,531 + +0.2
2,917,531 + -1.4
2,917,531 + -0.3
2,917,531 + -1.4
2,917,531 + -1.3
2,917,531 + +0.4
2,917,531 + -0.0
2,917,537 + -0.2
2,917,537 + +0.8
2,917,610 + -1.4
2,917,658 + -1.2
2,917,658 + -1.0
2,917,658 + -2.3
2,917,658 + -3.2
2,917,658 + -2.4
2,917,658 + -0.5
2,917,729 + -2.8
2,917,863 + AO353_13165 0.21 -0.4
2,917,863 + AO353_13165 0.21 -0.2
2,918,005 + AO353_13165 0.33 -3.8
2,918,005 + AO353_13165 0.33 -2.2
2,918,005 + AO353_13165 0.33 -1.9
2,918,116 + AO353_13165 0.42 +1.8
2,918,116 + AO353_13165 0.42 -0.5
2,918,116 + AO353_13165 0.42 -1.9
2,918,116 + AO353_13165 0.42 -1.2
2,918,116 + AO353_13165 0.42 -3.3
2,918,116 + AO353_13165 0.42 -1.0
2,918,116 + AO353_13165 0.42 -1.4
2,918,208 + AO353_13165 0.50 -2.6
2,918,208 + AO353_13165 0.50 -1.0
2,918,208 + AO353_13165 0.50 -0.8
2,918,208 + AO353_13165 0.50 -2.4
2,918,208 + AO353_13165 0.50 -1.6
2,918,401 + AO353_13165 0.66 -1.2
2,918,434 + AO353_13165 0.69 -0.2
2,918,459 + AO353_13165 0.71 -2.4
2,918,616 + AO353_13165 0.85 -2.0
2,918,780 + -1.2
2,918,780 + -1.4
2,918,780 + -0.8
2,918,780 + +0.4
2,918,780 + +0.1
2,918,780 + -0.3

Or see this region's nucleotide sequence