Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_12815

Experiment: m-Inositol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_12810 and AO353_12815 are separated by 460 nucleotidesAO353_12815 and AO353_12820 are separated by 341 nucleotides AO353_12810: AO353_12810 - L-glutamate gamma-semialdehyde dehydrogenase (EC 1.2.1.88); Proline dehydrogenase (EC 1.5.5.2) (from data), at 2,822,314 to 2,826,267 _12810 AO353_12815: AO353_12815 - proline:sodium symporter PutP, at 2,826,728 to 2,828,212 _12815 AO353_12820: AO353_12820 - type IV secretion protein Rhs, at 2,828,554 to 2,830,566 _12820 Position (kb) 2826 2827 2828 2829Strain fitness (log2 ratio) -2 -1 0 1 2 3at 2825.835 kb on + strand, within AO353_12810at 2825.835 kb on + strand, within AO353_12810at 2825.835 kb on + strand, within AO353_12810at 2825.836 kb on - strand, within AO353_12810at 2825.836 kb on - strand, within AO353_12810at 2825.836 kb on - strand, within AO353_12810at 2825.836 kb on - strand, within AO353_12810at 2826.149 kb on + strandat 2826.150 kb on - strandat 2826.150 kb on - strandat 2826.268 kb on - strandat 2826.273 kb on + strandat 2826.321 kb on - strandat 2826.394 kb on + strandat 2826.554 kb on + strandat 2826.555 kb on - strandat 2826.632 kb on - strandat 2826.698 kb on + strandat 2826.702 kb on + strandat 2826.702 kb on + strandat 2826.703 kb on - strandat 2826.703 kb on - strandat 2826.703 kb on - strandat 2826.721 kb on + strandat 2826.721 kb on + strandat 2826.721 kb on + strandat 2826.722 kb on - strandat 2826.767 kb on + strandat 2826.767 kb on + strandat 2826.767 kb on + strandat 2826.767 kb on + strandat 2826.768 kb on - strandat 2826.768 kb on - strandat 2826.768 kb on - strandat 2826.830 kb on + strandat 2826.830 kb on + strandat 2826.831 kb on - strandat 2826.831 kb on - strandat 2826.831 kb on - strandat 2826.932 kb on + strand, within AO353_12815at 2826.932 kb on + strand, within AO353_12815at 2826.932 kb on + strand, within AO353_12815at 2826.932 kb on + strand, within AO353_12815at 2826.932 kb on + strand, within AO353_12815at 2826.932 kb on + strand, within AO353_12815at 2826.932 kb on + strand, within AO353_12815at 2826.932 kb on + strand, within AO353_12815at 2826.932 kb on + strand, within AO353_12815at 2826.932 kb on + strand, within AO353_12815at 2826.932 kb on + strand, within AO353_12815at 2826.932 kb on + strand, within AO353_12815at 2826.932 kb on + strand, within AO353_12815at 2826.932 kb on + strand, within AO353_12815at 2826.932 kb on + strand, within AO353_12815at 2826.932 kb on + strand, within AO353_12815at 2826.932 kb on + strand, within AO353_12815at 2826.932 kb on + strand, within AO353_12815at 2826.932 kb on + strand, within AO353_12815at 2826.932 kb on + strand, within AO353_12815at 2826.932 kb on + strand, within AO353_12815at 2826.932 kb on + strand, within AO353_12815at 2826.933 kb on - strand, within AO353_12815at 2826.933 kb on - strand, within AO353_12815at 2826.933 kb on - strand, within AO353_12815at 2826.933 kb on - strand, within AO353_12815at 2826.933 kb on - strand, within AO353_12815at 2826.933 kb on - strand, within AO353_12815at 2826.933 kb on - strand, within AO353_12815at 2826.933 kb on - strand, within AO353_12815at 2826.933 kb on - strand, within AO353_12815at 2826.933 kb on - strand, within AO353_12815at 2826.933 kb on - strand, within AO353_12815at 2826.986 kb on + strand, within AO353_12815at 2826.987 kb on - strand, within AO353_12815at 2827.145 kb on + strand, within AO353_12815at 2827.145 kb on + strand, within AO353_12815at 2827.145 kb on + strand, within AO353_12815at 2827.145 kb on + strand, within AO353_12815at 2827.146 kb on - strand, within AO353_12815at 2827.146 kb on - strand, within AO353_12815at 2827.146 kb on - strand, within AO353_12815at 2827.146 kb on - strand, within AO353_12815at 2827.206 kb on - strand, within AO353_12815at 2827.206 kb on - strand, within AO353_12815at 2827.247 kb on + strand, within AO353_12815at 2827.248 kb on - strand, within AO353_12815at 2827.248 kb on - strand, within AO353_12815at 2827.248 kb on - strand, within AO353_12815at 2827.248 kb on - strand, within AO353_12815at 2827.248 kb on - strand, within AO353_12815at 2827.469 kb on + strand, within AO353_12815at 2827.469 kb on + strand, within AO353_12815at 2827.610 kb on + strand, within AO353_12815at 2827.610 kb on + strand, within AO353_12815at 2827.610 kb on + strand, within AO353_12815at 2827.610 kb on + strand, within AO353_12815at 2827.610 kb on + strand, within AO353_12815at 2827.611 kb on - strand, within AO353_12815at 2827.611 kb on - strand, within AO353_12815at 2827.611 kb on - strand, within AO353_12815at 2827.748 kb on - strand, within AO353_12815at 2827.799 kb on + strand, within AO353_12815at 2827.799 kb on + strand, within AO353_12815at 2827.799 kb on + strand, within AO353_12815at 2827.799 kb on + strand, within AO353_12815at 2827.799 kb on + strand, within AO353_12815at 2827.800 kb on - strand, within AO353_12815at 2827.800 kb on - strand, within AO353_12815at 2827.800 kb on - strand, within AO353_12815at 2827.816 kb on + strand, within AO353_12815at 2827.817 kb on - strand, within AO353_12815at 2827.934 kb on + strand, within AO353_12815at 2827.934 kb on + strand, within AO353_12815at 2827.935 kb on - strand, within AO353_12815at 2827.935 kb on - strand, within AO353_12815at 2827.935 kb on - strand, within AO353_12815at 2827.935 kb on - strand, within AO353_12815at 2827.935 kb on - strand, within AO353_12815at 2827.974 kb on + strand, within AO353_12815at 2827.974 kb on + strand, within AO353_12815at 2827.974 kb on + strand, within AO353_12815at 2827.975 kb on - strand, within AO353_12815at 2827.975 kb on - strand, within AO353_12815at 2827.986 kb on + strand, within AO353_12815at 2828.084 kb on + strandat 2828.085 kb on - strandat 2828.085 kb on - strandat 2828.123 kb on - strandat 2828.123 kb on - strandat 2828.232 kb on - strandat 2828.232 kb on - strandat 2828.246 kb on + strandat 2828.247 kb on - strandat 2828.336 kb on + strandat 2828.336 kb on + strandat 2828.336 kb on + strandat 2828.336 kb on + strandat 2828.336 kb on + strandat 2828.336 kb on + strandat 2828.336 kb on + strandat 2828.336 kb on + strandat 2828.336 kb on + strandat 2828.337 kb on - strandat 2828.337 kb on - strandat 2828.337 kb on - strandat 2828.340 kb on + strandat 2828.340 kb on + strandat 2828.340 kb on + strandat 2828.340 kb on + strandat 2828.340 kb on + strandat 2828.340 kb on + strandat 2828.341 kb on - strandat 2828.341 kb on - strandat 2828.341 kb on - strandat 2828.341 kb on - strandat 2828.341 kb on - strandat 2828.341 kb on - strandat 2828.350 kb on - strandat 2828.350 kb on - strandat 2828.350 kb on - strandat 2828.350 kb on - strandat 2828.355 kb on + strandat 2828.355 kb on + strandat 2828.356 kb on - strandat 2828.356 kb on - strandat 2828.356 kb on - strandat 2828.421 kb on + strandat 2828.422 kb on - strandat 2828.422 kb on - strandat 2828.422 kb on - strandat 2828.424 kb on + strandat 2828.424 kb on + strandat 2828.424 kb on + strandat 2828.424 kb on + strandat 2828.424 kb on + strandat 2828.424 kb on + strandat 2828.425 kb on - strandat 2828.425 kb on - strandat 2828.425 kb on - strandat 2828.425 kb on - strandat 2828.425 kb on - strandat 2828.425 kb on - strandat 2828.425 kb on - strandat 2828.580 kb on + strandat 2828.659 kb on + strandat 2828.660 kb on - strandat 2828.719 kb on + strandat 2828.848 kb on + strand, within AO353_12820at 2828.848 kb on + strand, within AO353_12820at 2828.849 kb on - strand, within AO353_12820at 2828.849 kb on - strand, within AO353_12820at 2828.849 kb on - strand, within AO353_12820at 2828.886 kb on + strand, within AO353_12820at 2828.886 kb on + strand, within AO353_12820at 2828.886 kb on + strand, within AO353_12820at 2828.886 kb on + strand, within AO353_12820at 2828.887 kb on - strand, within AO353_12820at 2828.887 kb on - strand, within AO353_12820at 2828.887 kb on - strand, within AO353_12820at 2828.887 kb on - strand, within AO353_12820at 2828.887 kb on - strand, within AO353_12820at 2828.887 kb on - strand, within AO353_12820at 2828.887 kb on - strand, within AO353_12820at 2828.954 kb on + strand, within AO353_12820at 2828.955 kb on - strand, within AO353_12820at 2828.955 kb on - strand, within AO353_12820at 2828.971 kb on + strand, within AO353_12820at 2828.971 kb on + strand, within AO353_12820at 2828.971 kb on + strand, within AO353_12820at 2828.972 kb on - strand, within AO353_12820at 2828.972 kb on - strand, within AO353_12820at 2828.987 kb on - strand, within AO353_12820at 2829.021 kb on + strand, within AO353_12820at 2829.055 kb on + strand, within AO353_12820at 2829.055 kb on + strand, within AO353_12820at 2829.142 kb on + strand, within AO353_12820at 2829.143 kb on - strand, within AO353_12820at 2829.143 kb on - strand, within AO353_12820at 2829.143 kb on - strand, within AO353_12820at 2829.143 kb on - strand, within AO353_12820

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Per-strain Table

Position Strand Gene LocusTag Fraction m-Inositol (C)
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2,825,835 + AO353_12810 0.89 -0.7
2,825,835 + AO353_12810 0.89 -0.0
2,825,835 + AO353_12810 0.89 +1.8
2,825,836 - AO353_12810 0.89 -0.3
2,825,836 - AO353_12810 0.89 +0.1
2,825,836 - AO353_12810 0.89 +0.3
2,825,836 - AO353_12810 0.89 +0.4
2,826,149 + -1.3
2,826,150 - +0.7
2,826,150 - -0.5
2,826,268 - -0.3
2,826,273 + +0.5
2,826,321 - +0.3
2,826,394 + -1.7
2,826,554 + -1.6
2,826,555 - +0.6
2,826,632 - -0.1
2,826,698 + +0.8
2,826,702 + +0.8
2,826,702 + -0.3
2,826,703 - -1.9
2,826,703 - +0.4
2,826,703 - -1.4
2,826,721 + +0.1
2,826,721 + -0.2
2,826,721 + -0.2
2,826,722 - +0.8
2,826,767 + -2.4
2,826,767 + -1.6
2,826,767 + +0.7
2,826,767 + -0.2
2,826,768 - +0.3
2,826,768 - -0.2
2,826,768 - -2.7
2,826,830 + +0.2
2,826,830 + +1.0
2,826,831 - -0.6
2,826,831 - +1.1
2,826,831 - -0.8
2,826,932 + AO353_12815 0.14 +0.5
2,826,932 + AO353_12815 0.14 +0.5
2,826,932 + AO353_12815 0.14 +0.5
2,826,932 + AO353_12815 0.14 +0.8
2,826,932 + AO353_12815 0.14 +0.8
2,826,932 + AO353_12815 0.14 +0.5
2,826,932 + AO353_12815 0.14 -0.7
2,826,932 + AO353_12815 0.14 -0.4
2,826,932 + AO353_12815 0.14 +0.8
2,826,932 + AO353_12815 0.14 +0.2
2,826,932 + AO353_12815 0.14 +2.1
2,826,932 + AO353_12815 0.14 +0.5
2,826,932 + AO353_12815 0.14 +0.5
2,826,932 + AO353_12815 0.14 +1.3
2,826,932 + AO353_12815 0.14 +0.8
2,826,932 + AO353_12815 0.14 -0.4
2,826,932 + AO353_12815 0.14 -0.4
2,826,932 + AO353_12815 0.14 -0.2
2,826,932 + AO353_12815 0.14 +0.1
2,826,932 + AO353_12815 0.14 +0.0
2,826,932 + AO353_12815 0.14 -1.0
2,826,932 + AO353_12815 0.14 -0.1
2,826,933 - AO353_12815 0.14 -1.7
2,826,933 - AO353_12815 0.14 -0.3
2,826,933 - AO353_12815 0.14 +0.8
2,826,933 - AO353_12815 0.14 +1.5
2,826,933 - AO353_12815 0.14 +1.3
2,826,933 - AO353_12815 0.14 +2.4
2,826,933 - AO353_12815 0.14 -0.7
2,826,933 - AO353_12815 0.14 +1.4
2,826,933 - AO353_12815 0.14 +0.5
2,826,933 - AO353_12815 0.14 +1.2
2,826,933 - AO353_12815 0.14 +0.7
2,826,986 + AO353_12815 0.17 -0.7
2,826,987 - AO353_12815 0.17 -1.3
2,827,145 + AO353_12815 0.28 +0.3
2,827,145 + AO353_12815 0.28 +0.6
2,827,145 + AO353_12815 0.28 -0.4
2,827,145 + AO353_12815 0.28 +0.4
2,827,146 - AO353_12815 0.28 -0.1
2,827,146 - AO353_12815 0.28 +1.3
2,827,146 - AO353_12815 0.28 -0.6
2,827,146 - AO353_12815 0.28 +0.2
2,827,206 - AO353_12815 0.32 +0.8
2,827,206 - AO353_12815 0.32 +0.6
2,827,247 + AO353_12815 0.35 +0.5
2,827,248 - AO353_12815 0.35 +1.3
2,827,248 - AO353_12815 0.35 -0.3
2,827,248 - AO353_12815 0.35 +1.6
2,827,248 - AO353_12815 0.35 -0.6
2,827,248 - AO353_12815 0.35 +0.1
2,827,469 + AO353_12815 0.50 +0.6
2,827,469 + AO353_12815 0.50 +0.3
2,827,610 + AO353_12815 0.59 -0.2
2,827,610 + AO353_12815 0.59 -0.4
2,827,610 + AO353_12815 0.59 +0.8
2,827,610 + AO353_12815 0.59 -1.5
2,827,610 + AO353_12815 0.59 +0.5
2,827,611 - AO353_12815 0.59 -0.1
2,827,611 - AO353_12815 0.59 +0.2
2,827,611 - AO353_12815 0.59 +1.3
2,827,748 - AO353_12815 0.69 +0.7
2,827,799 + AO353_12815 0.72 +0.0
2,827,799 + AO353_12815 0.72 +0.8
2,827,799 + AO353_12815 0.72 +0.4
2,827,799 + AO353_12815 0.72 -0.8
2,827,799 + AO353_12815 0.72 +1.0
2,827,800 - AO353_12815 0.72 -0.2
2,827,800 - AO353_12815 0.72 -0.2
2,827,800 - AO353_12815 0.72 +1.6
2,827,816 + AO353_12815 0.73 -0.7
2,827,817 - AO353_12815 0.73 +0.3
2,827,934 + AO353_12815 0.81 -0.1
2,827,934 + AO353_12815 0.81 +0.7
2,827,935 - AO353_12815 0.81 +0.5
2,827,935 - AO353_12815 0.81 +0.8
2,827,935 - AO353_12815 0.81 +1.4
2,827,935 - AO353_12815 0.81 +0.6
2,827,935 - AO353_12815 0.81 +0.5
2,827,974 + AO353_12815 0.84 -1.5
2,827,974 + AO353_12815 0.84 +0.6
2,827,974 + AO353_12815 0.84 -0.3
2,827,975 - AO353_12815 0.84 +0.1
2,827,975 - AO353_12815 0.84 -0.2
2,827,986 + AO353_12815 0.85 +0.3
2,828,084 + +0.8
2,828,085 - +0.9
2,828,085 - +1.5
2,828,123 - +1.3
2,828,123 - +0.7
2,828,232 - +0.5
2,828,232 - +1.4
2,828,246 + +0.5
2,828,247 - -0.2
2,828,336 + +0.0
2,828,336 + -0.7
2,828,336 + -1.7
2,828,336 + +0.3
2,828,336 + +0.9
2,828,336 + -1.0
2,828,336 + -0.7
2,828,336 + +1.3
2,828,336 + -0.0
2,828,337 - -0.7
2,828,337 - -0.7
2,828,337 - +1.1
2,828,340 + +0.5
2,828,340 + -0.7
2,828,340 + +0.5
2,828,340 + +0.7
2,828,340 + +0.5
2,828,340 + -0.2
2,828,341 - +0.6
2,828,341 - +0.3
2,828,341 - +0.6
2,828,341 - +0.8
2,828,341 - -0.8
2,828,341 - -0.6
2,828,350 - +0.7
2,828,350 - +0.7
2,828,350 - +0.8
2,828,350 - -0.3
2,828,355 + -0.5
2,828,355 + +0.1
2,828,356 - +0.3
2,828,356 - -1.1
2,828,356 - -0.5
2,828,421 + -0.7
2,828,422 - -0.2
2,828,422 - +0.7
2,828,422 - -0.9
2,828,424 + -0.5
2,828,424 + +1.3
2,828,424 + +1.1
2,828,424 + +1.0
2,828,424 + +0.2
2,828,424 + -0.2
2,828,425 - +0.4
2,828,425 - -0.7
2,828,425 - +0.5
2,828,425 - +1.2
2,828,425 - -0.2
2,828,425 - +1.1
2,828,425 - +0.8
2,828,580 + -1.3
2,828,659 + +1.0
2,828,660 - -0.1
2,828,719 + +0.7
2,828,848 + AO353_12820 0.15 -2.3
2,828,848 + AO353_12820 0.15 +0.7
2,828,849 - AO353_12820 0.15 +0.3
2,828,849 - AO353_12820 0.15 +0.2
2,828,849 - AO353_12820 0.15 +0.2
2,828,886 + AO353_12820 0.16 -0.6
2,828,886 + AO353_12820 0.16 +1.0
2,828,886 + AO353_12820 0.16 -1.0
2,828,886 + AO353_12820 0.16 +1.4
2,828,887 - AO353_12820 0.17 +0.7
2,828,887 - AO353_12820 0.17 +0.6
2,828,887 - AO353_12820 0.17 -1.2
2,828,887 - AO353_12820 0.17 -0.1
2,828,887 - AO353_12820 0.17 +0.4
2,828,887 - AO353_12820 0.17 +0.8
2,828,887 - AO353_12820 0.17 -1.2
2,828,954 + AO353_12820 0.20 -0.1
2,828,955 - AO353_12820 0.20 +0.4
2,828,955 - AO353_12820 0.20 +1.1
2,828,971 + AO353_12820 0.21 +0.7
2,828,971 + AO353_12820 0.21 +1.3
2,828,971 + AO353_12820 0.21 +0.5
2,828,972 - AO353_12820 0.21 +0.3
2,828,972 - AO353_12820 0.21 +2.8
2,828,987 - AO353_12820 0.22 -0.1
2,829,021 + AO353_12820 0.23 +0.5
2,829,055 + AO353_12820 0.25 -0.7
2,829,055 + AO353_12820 0.25 +0.7
2,829,142 + AO353_12820 0.29 +0.2
2,829,143 - AO353_12820 0.29 -0.5
2,829,143 - AO353_12820 0.29 -1.9
2,829,143 - AO353_12820 0.29 +0.7
2,829,143 - AO353_12820 0.29 +0.5

Or see this region's nucleotide sequence