Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_10440

Experiment: m-Inositol (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntAO353_10430 and AO353_10435 are separated by 9 nucleotidesAO353_10435 and AO353_10440 are separated by 18 nucleotidesAO353_10440 and AO353_10445 overlap by 4 nucleotides AO353_10430: AO353_10430 - chromosome partitioning protein ParB, at 2,284,695 to 2,285,567 _10430 AO353_10435: AO353_10435 - chromosome partitioning protein, at 2,285,577 to 2,286,374 _10435 AO353_10440: AO353_10440 - 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG, at 2,286,393 to 2,287,037 _10440 AO353_10445: AO353_10445 - tRNA uridine 5-carboxymethylaminomethyl modification protein, at 2,287,034 to 2,288,932 _10445 Position (kb) 2286 2287 2288Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2285.422 kb on + strand, within AO353_10430at 2285.422 kb on + strand, within AO353_10430at 2285.422 kb on + strand, within AO353_10430at 2285.422 kb on + strand, within AO353_10430at 2285.422 kb on + strand, within AO353_10430at 2285.422 kb on + strand, within AO353_10430at 2285.423 kb on - strand, within AO353_10430at 2285.423 kb on - strand, within AO353_10430at 2285.423 kb on - strand, within AO353_10430at 2285.423 kb on - strand, within AO353_10430at 2285.423 kb on - strand, within AO353_10430at 2285.578 kb on + strandat 2285.578 kb on + strandat 2285.578 kb on + strandat 2285.578 kb on + strandat 2285.578 kb on + strandat 2285.578 kb on + strandat 2285.579 kb on - strandat 2285.650 kb on + strandat 2285.651 kb on - strandat 2285.680 kb on + strand, within AO353_10435at 2285.680 kb on + strand, within AO353_10435at 2285.680 kb on + strand, within AO353_10435at 2285.701 kb on + strand, within AO353_10435at 2285.701 kb on + strand, within AO353_10435at 2285.701 kb on + strand, within AO353_10435at 2285.749 kb on + strand, within AO353_10435at 2285.749 kb on + strand, within AO353_10435at 2285.750 kb on - strand, within AO353_10435at 2285.750 kb on - strand, within AO353_10435at 2285.750 kb on - strand, within AO353_10435at 2285.818 kb on + strand, within AO353_10435at 2285.818 kb on + strand, within AO353_10435at 2285.818 kb on + strand, within AO353_10435at 2285.818 kb on + strand, within AO353_10435at 2285.818 kb on + strand, within AO353_10435at 2285.818 kb on + strand, within AO353_10435at 2285.818 kb on + strand, within AO353_10435at 2285.818 kb on + strand, within AO353_10435at 2285.818 kb on + strand, within AO353_10435at 2285.818 kb on + strand, within AO353_10435at 2285.818 kb on + strand, within AO353_10435at 2285.818 kb on + strand, within AO353_10435at 2285.818 kb on + strand, within AO353_10435at 2285.818 kb on + strand, within AO353_10435at 2285.818 kb on + strand, within AO353_10435at 2285.818 kb on + strand, within AO353_10435at 2285.818 kb on + strand, within AO353_10435at 2285.818 kb on + strand, within AO353_10435at 2285.818 kb on + strand, within AO353_10435at 2285.818 kb on + strand, within AO353_10435at 2285.818 kb on + strand, within AO353_10435at 2285.818 kb on + strand, within AO353_10435at 2285.818 kb on + strand, within AO353_10435at 2285.819 kb on - strand, within AO353_10435at 2285.819 kb on - strand, within AO353_10435at 2285.819 kb on - strand, within AO353_10435at 2285.819 kb on - strand, within AO353_10435at 2285.819 kb on - strand, within AO353_10435at 2285.819 kb on - strand, within AO353_10435at 2285.819 kb on - strand, within AO353_10435at 2285.819 kb on - strand, within AO353_10435at 2285.819 kb on - strand, within AO353_10435at 2285.819 kb on - strand, within AO353_10435at 2285.819 kb on - strand, within AO353_10435at 2285.819 kb on - strand, within AO353_10435at 2285.819 kb on - strand, within AO353_10435at 2285.819 kb on - strand, within AO353_10435at 2285.819 kb on - strand, within AO353_10435at 2285.920 kb on + strand, within AO353_10435at 2285.921 kb on - strand, within AO353_10435at 2285.939 kb on + strand, within AO353_10435at 2285.939 kb on + strand, within AO353_10435at 2285.940 kb on - strand, within AO353_10435at 2285.944 kb on - strand, within AO353_10435at 2286.013 kb on + strand, within AO353_10435at 2286.013 kb on + strand, within AO353_10435at 2286.014 kb on - strand, within AO353_10435at 2286.019 kb on + strand, within AO353_10435at 2286.019 kb on + strand, within AO353_10435at 2286.019 kb on + strand, within AO353_10435at 2286.019 kb on + strand, within AO353_10435at 2286.019 kb on + strand, within AO353_10435at 2286.019 kb on + strand, within AO353_10435at 2286.019 kb on + strand, within AO353_10435at 2286.019 kb on + strand, within AO353_10435at 2286.019 kb on + strand, within AO353_10435at 2286.020 kb on - strand, within AO353_10435at 2286.020 kb on - strand, within AO353_10435at 2286.020 kb on - strand, within AO353_10435at 2286.193 kb on + strand, within AO353_10435at 2286.193 kb on + strand, within AO353_10435at 2286.194 kb on - strand, within AO353_10435at 2286.363 kb on + strandat 2286.363 kb on + strandat 2286.363 kb on + strandat 2286.363 kb on + strandat 2286.364 kb on - strandat 2286.364 kb on - strandat 2286.364 kb on - strandat 2286.364 kb on - strandat 2286.364 kb on - strandat 2286.368 kb on + strandat 2286.411 kb on + strandat 2286.412 kb on - strandat 2286.606 kb on - strand, within AO353_10440at 2286.606 kb on - strand, within AO353_10440at 2286.606 kb on - strand, within AO353_10440at 2286.656 kb on + strand, within AO353_10440at 2286.657 kb on - strand, within AO353_10440at 2286.774 kb on - strand, within AO353_10440at 2286.901 kb on + strand, within AO353_10440at 2286.901 kb on + strand, within AO353_10440at 2286.901 kb on + strand, within AO353_10440at 2286.901 kb on + strand, within AO353_10440at 2286.901 kb on + strand, within AO353_10440at 2286.901 kb on + strand, within AO353_10440at 2286.901 kb on + strand, within AO353_10440at 2286.901 kb on + strand, within AO353_10440at 2286.901 kb on + strand, within AO353_10440at 2286.901 kb on + strand, within AO353_10440at 2286.901 kb on + strand, within AO353_10440at 2286.901 kb on + strand, within AO353_10440at 2286.902 kb on - strand, within AO353_10440at 2286.902 kb on - strand, within AO353_10440at 2286.902 kb on - strand, within AO353_10440at 2286.902 kb on - strand, within AO353_10440at 2286.902 kb on - strand, within AO353_10440at 2286.935 kb on - strand, within AO353_10440at 2287.408 kb on - strand, within AO353_10445at 2287.844 kb on - strand, within AO353_10445at 2287.844 kb on - strand, within AO353_10445at 2287.888 kb on - strand, within AO353_10445

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction m-Inositol (C)
remove
2,285,422 + AO353_10430 0.83 -0.6
2,285,422 + AO353_10430 0.83 -2.0
2,285,422 + AO353_10430 0.83 +0.7
2,285,422 + AO353_10430 0.83 +1.7
2,285,422 + AO353_10430 0.83 -0.2
2,285,422 + AO353_10430 0.83 +1.4
2,285,423 - AO353_10430 0.83 -1.3
2,285,423 - AO353_10430 0.83 +0.4
2,285,423 - AO353_10430 0.83 +0.7
2,285,423 - AO353_10430 0.83 +2.0
2,285,423 - AO353_10430 0.83 +0.1
2,285,578 + -1.2
2,285,578 + +1.0
2,285,578 + -1.6
2,285,578 + -1.4
2,285,578 + -0.0
2,285,578 + -0.1
2,285,579 - -0.5
2,285,650 + -1.8
2,285,651 - -2.6
2,285,680 + AO353_10435 0.13 +0.5
2,285,680 + AO353_10435 0.13 -0.6
2,285,680 + AO353_10435 0.13 +0.4
2,285,701 + AO353_10435 0.16 -0.0
2,285,701 + AO353_10435 0.16 -0.3
2,285,701 + AO353_10435 0.16 +0.2
2,285,749 + AO353_10435 0.22 -0.0
2,285,749 + AO353_10435 0.22 -0.7
2,285,750 - AO353_10435 0.22 +0.2
2,285,750 - AO353_10435 0.22 -1.7
2,285,750 - AO353_10435 0.22 -0.8
2,285,818 + AO353_10435 0.30 -0.5
2,285,818 + AO353_10435 0.30 -0.9
2,285,818 + AO353_10435 0.30 -0.2
2,285,818 + AO353_10435 0.30 -0.6
2,285,818 + AO353_10435 0.30 +1.0
2,285,818 + AO353_10435 0.30 -0.5
2,285,818 + AO353_10435 0.30 +1.2
2,285,818 + AO353_10435 0.30 -0.5
2,285,818 + AO353_10435 0.30 +0.2
2,285,818 + AO353_10435 0.30 -0.5
2,285,818 + AO353_10435 0.30 -0.0
2,285,818 + AO353_10435 0.30 +0.7
2,285,818 + AO353_10435 0.30 +0.4
2,285,818 + AO353_10435 0.30 +1.3
2,285,818 + AO353_10435 0.30 +0.7
2,285,818 + AO353_10435 0.30 -0.7
2,285,818 + AO353_10435 0.30 -2.4
2,285,818 + AO353_10435 0.30 +0.2
2,285,818 + AO353_10435 0.30 -1.3
2,285,818 + AO353_10435 0.30 +0.6
2,285,818 + AO353_10435 0.30 -1.2
2,285,818 + AO353_10435 0.30 -1.5
2,285,818 + AO353_10435 0.30 -1.1
2,285,819 - AO353_10435 0.30 -0.8
2,285,819 - AO353_10435 0.30 -1.1
2,285,819 - AO353_10435 0.30 -1.5
2,285,819 - AO353_10435 0.30 -1.4
2,285,819 - AO353_10435 0.30 -0.1
2,285,819 - AO353_10435 0.30 -1.5
2,285,819 - AO353_10435 0.30 -1.0
2,285,819 - AO353_10435 0.30 -1.2
2,285,819 - AO353_10435 0.30 -0.0
2,285,819 - AO353_10435 0.30 -1.4
2,285,819 - AO353_10435 0.30 -0.8
2,285,819 - AO353_10435 0.30 -0.6
2,285,819 - AO353_10435 0.30 -1.8
2,285,819 - AO353_10435 0.30 -1.6
2,285,819 - AO353_10435 0.30 -1.0
2,285,920 + AO353_10435 0.43 -1.8
2,285,921 - AO353_10435 0.43 -1.2
2,285,939 + AO353_10435 0.45 -0.0
2,285,939 + AO353_10435 0.45 -0.0
2,285,940 - AO353_10435 0.45 +1.7
2,285,944 - AO353_10435 0.46 -1.7
2,286,013 + AO353_10435 0.55 -1.0
2,286,013 + AO353_10435 0.55 -0.5
2,286,014 - AO353_10435 0.55 +0.4
2,286,019 + AO353_10435 0.55 -1.5
2,286,019 + AO353_10435 0.55 -1.8
2,286,019 + AO353_10435 0.55 -0.8
2,286,019 + AO353_10435 0.55 -1.3
2,286,019 + AO353_10435 0.55 -2.7
2,286,019 + AO353_10435 0.55 -0.1
2,286,019 + AO353_10435 0.55 -0.6
2,286,019 + AO353_10435 0.55 +1.4
2,286,019 + AO353_10435 0.55 -0.0
2,286,020 - AO353_10435 0.56 +1.0
2,286,020 - AO353_10435 0.56 +0.2
2,286,020 - AO353_10435 0.56 -0.3
2,286,193 + AO353_10435 0.77 +1.3
2,286,193 + AO353_10435 0.77 -2.6
2,286,194 - AO353_10435 0.77 +1.2
2,286,363 + -0.5
2,286,363 + -2.8
2,286,363 + -0.7
2,286,363 + -0.4
2,286,364 - +2.4
2,286,364 - -1.7
2,286,364 - -1.2
2,286,364 - -0.6
2,286,364 - -1.9
2,286,368 + +0.2
2,286,411 + -1.0
2,286,412 - +0.5
2,286,606 - AO353_10440 0.33 -0.5
2,286,606 - AO353_10440 0.33 +0.1
2,286,606 - AO353_10440 0.33 -1.3
2,286,656 + AO353_10440 0.41 -0.6
2,286,657 - AO353_10440 0.41 -0.4
2,286,774 - AO353_10440 0.59 +1.0
2,286,901 + AO353_10440 0.79 -1.3
2,286,901 + AO353_10440 0.79 +0.2
2,286,901 + AO353_10440 0.79 -0.6
2,286,901 + AO353_10440 0.79 +1.0
2,286,901 + AO353_10440 0.79 -1.5
2,286,901 + AO353_10440 0.79 -0.8
2,286,901 + AO353_10440 0.79 -0.0
2,286,901 + AO353_10440 0.79 -1.5
2,286,901 + AO353_10440 0.79 +1.2
2,286,901 + AO353_10440 0.79 -1.2
2,286,901 + AO353_10440 0.79 -1.7
2,286,901 + AO353_10440 0.79 -1.7
2,286,902 - AO353_10440 0.79 +1.0
2,286,902 - AO353_10440 0.79 -1.8
2,286,902 - AO353_10440 0.79 -0.3
2,286,902 - AO353_10440 0.79 +0.4
2,286,902 - AO353_10440 0.79 -1.6
2,286,935 - AO353_10440 0.84 -1.7
2,287,408 - AO353_10445 0.20 +1.0
2,287,844 - AO353_10445 0.43 -0.3
2,287,844 - AO353_10445 0.43 -1.0
2,287,888 - AO353_10445 0.45 +1.2

Or see this region's nucleotide sequence