Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_09265

Experiment: m-Inositol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_09260 and AO353_09265 are separated by 270 nucleotidesAO353_09265 and AO353_09270 are separated by 12 nucleotidesAO353_09270 and AO353_09275 are separated by 168 nucleotides AO353_09260: AO353_09260 - ribonuclease PH, at 2,031,442 to 2,032,164 _09260 AO353_09265: AO353_09265 - hypothetical protein, at 2,032,435 to 2,033,298 _09265 AO353_09270: AO353_09270 - guanylate kinase, at 2,033,311 to 2,033,931 _09270 AO353_09275: AO353_09275 - DNA-directed RNA polymerase subunit omega, at 2,034,100 to 2,034,363 _09275 Position (kb) 2032 2033 2034Strain fitness (log2 ratio) -2 -1 0 1 2 3at 2031.477 kb on + strandat 2031.477 kb on + strandat 2031.477 kb on + strandat 2031.478 kb on - strandat 2031.478 kb on - strandat 2031.478 kb on - strandat 2031.629 kb on + strand, within AO353_09260at 2031.630 kb on - strand, within AO353_09260at 2031.659 kb on + strand, within AO353_09260at 2031.659 kb on + strand, within AO353_09260at 2031.659 kb on + strand, within AO353_09260at 2031.659 kb on + strand, within AO353_09260at 2031.660 kb on - strand, within AO353_09260at 2031.660 kb on - strand, within AO353_09260at 2031.660 kb on - strand, within AO353_09260at 2031.660 kb on - strand, within AO353_09260at 2031.660 kb on - strand, within AO353_09260at 2031.660 kb on - strand, within AO353_09260at 2031.660 kb on - strand, within AO353_09260at 2031.660 kb on - strand, within AO353_09260at 2031.660 kb on - strand, within AO353_09260at 2031.660 kb on - strand, within AO353_09260at 2031.660 kb on - strand, within AO353_09260at 2031.660 kb on - strand, within AO353_09260at 2031.660 kb on - strand, within AO353_09260at 2031.660 kb on - strand, within AO353_09260at 2031.783 kb on + strand, within AO353_09260at 2031.783 kb on + strand, within AO353_09260at 2031.783 kb on + strand, within AO353_09260at 2031.784 kb on - strand, within AO353_09260at 2031.824 kb on + strand, within AO353_09260at 2031.824 kb on + strand, within AO353_09260at 2031.825 kb on - strand, within AO353_09260at 2031.825 kb on - strand, within AO353_09260at 2031.825 kb on - strand, within AO353_09260at 2031.825 kb on - strand, within AO353_09260at 2031.825 kb on - strand, within AO353_09260at 2031.825 kb on - strand, within AO353_09260at 2031.825 kb on - strand, within AO353_09260at 2031.825 kb on - strand, within AO353_09260at 2031.825 kb on - strand, within AO353_09260at 2031.825 kb on - strand, within AO353_09260at 2031.825 kb on - strand, within AO353_09260at 2031.903 kb on + strand, within AO353_09260at 2031.943 kb on - strand, within AO353_09260at 2031.974 kb on + strand, within AO353_09260at 2031.974 kb on + strand, within AO353_09260at 2032.059 kb on + strand, within AO353_09260at 2032.059 kb on + strand, within AO353_09260at 2032.078 kb on + strand, within AO353_09260at 2032.078 kb on + strand, within AO353_09260at 2032.079 kb on - strand, within AO353_09260at 2032.079 kb on - strand, within AO353_09260at 2032.079 kb on - strand, within AO353_09260at 2032.103 kb on + strandat 2032.103 kb on + strandat 2032.103 kb on + strandat 2032.104 kb on - strandat 2032.104 kb on - strandat 2032.104 kb on - strandat 2032.104 kb on - strandat 2032.104 kb on - strandat 2032.165 kb on - strandat 2032.165 kb on - strandat 2032.179 kb on - strandat 2032.205 kb on + strandat 2032.205 kb on + strandat 2032.205 kb on + strandat 2032.205 kb on + strandat 2032.205 kb on + strandat 2032.206 kb on - strandat 2032.206 kb on - strandat 2032.206 kb on - strandat 2032.206 kb on - strandat 2032.207 kb on + strandat 2032.207 kb on + strandat 2032.208 kb on - strandat 2032.208 kb on - strandat 2032.208 kb on - strandat 2032.237 kb on - strandat 2032.336 kb on + strandat 2032.337 kb on - strandat 2032.337 kb on - strandat 2032.368 kb on + strandat 2032.368 kb on + strandat 2032.368 kb on + strandat 2032.368 kb on + strandat 2032.377 kb on + strandat 2032.377 kb on + strandat 2032.377 kb on + strandat 2032.377 kb on + strandat 2032.428 kb on + strandat 2032.428 kb on + strandat 2032.428 kb on + strandat 2032.428 kb on + strandat 2033.196 kb on + strand, within AO353_09265at 2033.196 kb on + strand, within AO353_09265at 2033.196 kb on + strand, within AO353_09265at 2033.196 kb on + strand, within AO353_09265at 2033.196 kb on + strand, within AO353_09265at 2033.196 kb on + strand, within AO353_09265at 2033.296 kb on + strandat 2033.964 kb on + strandat 2033.964 kb on + strandat 2033.964 kb on + strandat 2033.964 kb on + strandat 2033.964 kb on + strandat 2033.964 kb on + strandat 2033.964 kb on + strandat 2033.964 kb on + strandat 2033.964 kb on + strandat 2033.965 kb on - strandat 2033.965 kb on - strandat 2033.965 kb on - strandat 2033.965 kb on - strandat 2033.972 kb on + strandat 2034.075 kb on + strandat 2034.075 kb on + strandat 2034.075 kb on + strandat 2034.096 kb on + strandat 2034.096 kb on + strandat 2034.096 kb on + strandat 2034.096 kb on + strandat 2034.096 kb on + strandat 2034.096 kb on + strandat 2034.128 kb on + strand, within AO353_09275at 2034.128 kb on + strand, within AO353_09275at 2034.128 kb on + strand, within AO353_09275at 2034.168 kb on + strand, within AO353_09275at 2034.280 kb on + strand, within AO353_09275at 2034.280 kb on + strand, within AO353_09275at 2034.280 kb on + strand, within AO353_09275at 2034.280 kb on + strand, within AO353_09275at 2034.280 kb on + strand, within AO353_09275at 2034.280 kb on + strand, within AO353_09275

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Per-strain Table

Position Strand Gene LocusTag Fraction m-Inositol (C)
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2,031,477 + -1.7
2,031,477 + +1.3
2,031,477 + +0.9
2,031,478 - -0.4
2,031,478 - -2.6
2,031,478 - -2.3
2,031,629 + AO353_09260 0.26 -0.2
2,031,630 - AO353_09260 0.26 -1.8
2,031,659 + AO353_09260 0.30 +0.9
2,031,659 + AO353_09260 0.30 +0.3
2,031,659 + AO353_09260 0.30 -0.7
2,031,659 + AO353_09260 0.30 +1.9
2,031,660 - AO353_09260 0.30 -0.4
2,031,660 - AO353_09260 0.30 +0.9
2,031,660 - AO353_09260 0.30 -0.1
2,031,660 - AO353_09260 0.30 +0.9
2,031,660 - AO353_09260 0.30 +1.3
2,031,660 - AO353_09260 0.30 +0.9
2,031,660 - AO353_09260 0.30 -1.1
2,031,660 - AO353_09260 0.30 -1.9
2,031,660 - AO353_09260 0.30 -1.2
2,031,660 - AO353_09260 0.30 -2.2
2,031,660 - AO353_09260 0.30 -0.2
2,031,660 - AO353_09260 0.30 +0.3
2,031,660 - AO353_09260 0.30 +0.7
2,031,660 - AO353_09260 0.30 -1.4
2,031,783 + AO353_09260 0.47 -1.1
2,031,783 + AO353_09260 0.47 -0.9
2,031,783 + AO353_09260 0.47 +0.9
2,031,784 - AO353_09260 0.47 -0.7
2,031,824 + AO353_09260 0.53 -1.2
2,031,824 + AO353_09260 0.53 -0.9
2,031,825 - AO353_09260 0.53 -1.4
2,031,825 - AO353_09260 0.53 +0.6
2,031,825 - AO353_09260 0.53 -0.1
2,031,825 - AO353_09260 0.53 -1.2
2,031,825 - AO353_09260 0.53 +1.9
2,031,825 - AO353_09260 0.53 -1.4
2,031,825 - AO353_09260 0.53 +1.6
2,031,825 - AO353_09260 0.53 +0.3
2,031,825 - AO353_09260 0.53 -1.7
2,031,825 - AO353_09260 0.53 +0.3
2,031,825 - AO353_09260 0.53 -0.4
2,031,903 + AO353_09260 0.64 -0.1
2,031,943 - AO353_09260 0.69 -2.1
2,031,974 + AO353_09260 0.74 -0.9
2,031,974 + AO353_09260 0.74 -1.1
2,032,059 + AO353_09260 0.85 -1.4
2,032,059 + AO353_09260 0.85 -0.1
2,032,078 + AO353_09260 0.88 -2.4
2,032,078 + AO353_09260 0.88 -0.7
2,032,079 - AO353_09260 0.88 +0.3
2,032,079 - AO353_09260 0.88 -0.9
2,032,079 - AO353_09260 0.88 -1.2
2,032,103 + -0.7
2,032,103 + -0.9
2,032,103 + +0.9
2,032,104 - +2.9
2,032,104 - -2.0
2,032,104 - +1.6
2,032,104 - +0.1
2,032,104 - -1.7
2,032,165 - -0.6
2,032,165 - -1.1
2,032,179 - -1.1
2,032,205 + +0.6
2,032,205 + -0.4
2,032,205 + -1.7
2,032,205 + -0.9
2,032,205 + -1.2
2,032,206 - -1.1
2,032,206 - +0.1
2,032,206 - -0.2
2,032,206 - -1.2
2,032,207 + -0.5
2,032,207 + -0.1
2,032,208 - +0.5
2,032,208 - -0.1
2,032,208 - +0.5
2,032,237 - -0.0
2,032,336 + +0.2
2,032,337 - +0.1
2,032,337 - +0.6
2,032,368 + +0.6
2,032,368 + -0.1
2,032,368 + -0.2
2,032,368 + -0.2
2,032,377 + -0.5
2,032,377 + +0.4
2,032,377 + -0.5
2,032,377 + +0.1
2,032,428 + +0.9
2,032,428 + -0.0
2,032,428 + +1.2
2,032,428 + -0.7
2,033,196 + AO353_09265 0.88 -0.4
2,033,196 + AO353_09265 0.88 -0.8
2,033,196 + AO353_09265 0.88 -0.5
2,033,196 + AO353_09265 0.88 -1.5
2,033,196 + AO353_09265 0.88 -0.7
2,033,196 + AO353_09265 0.88 -0.7
2,033,296 + +1.1
2,033,964 + +0.8
2,033,964 + -0.2
2,033,964 + -0.9
2,033,964 + +0.2
2,033,964 + +0.0
2,033,964 + +0.6
2,033,964 + +0.0
2,033,964 + +0.3
2,033,964 + +0.6
2,033,965 - -1.6
2,033,965 - +0.4
2,033,965 - +1.5
2,033,965 - +0.3
2,033,972 + -0.4
2,034,075 + +0.9
2,034,075 + +0.3
2,034,075 + +0.5
2,034,096 + +2.6
2,034,096 + -0.1
2,034,096 + +0.5
2,034,096 + +1.9
2,034,096 + -1.4
2,034,096 + -0.3
2,034,128 + AO353_09275 0.11 -0.7
2,034,128 + AO353_09275 0.11 -1.2
2,034,128 + AO353_09275 0.11 +1.2
2,034,168 + AO353_09275 0.26 +0.6
2,034,280 + AO353_09275 0.68 +0.1
2,034,280 + AO353_09275 0.68 -0.4
2,034,280 + AO353_09275 0.68 +1.6
2,034,280 + AO353_09275 0.68 -1.1
2,034,280 + AO353_09275 0.68 -0.2
2,034,280 + AO353_09275 0.68 -0.8

Or see this region's nucleotide sequence