Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_09235

Experiment: m-Inositol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_09225 and AO353_09230 are separated by 5 nucleotidesAO353_09230 and AO353_09235 are separated by 298 nucleotidesAO353_09235 and AO353_09240 are separated by 38 nucleotides AO353_09225: AO353_09225 - phosphopantothenoylcysteine decarboxylase, at 2,024,905 to 2,026,113 _09225 AO353_09230: AO353_09230 - deoxyuridine 5'-triphosphate nucleotidohydrolase, at 2,026,119 to 2,026,574 _09230 AO353_09235: AO353_09235 - phosphoglucomutase, at 2,026,873 to 2,028,270 _09235 AO353_09240: AO353_09240 - acetylglutamate kinase, at 2,028,309 to 2,029,214 _09240 Position (kb) 2026 2027 2028 2029Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2026.111 kb on + strandat 2026.111 kb on + strandat 2026.111 kb on + strandat 2026.575 kb on + strandat 2026.575 kb on + strandat 2026.575 kb on + strandat 2026.575 kb on + strandat 2026.575 kb on + strandat 2026.575 kb on + strandat 2026.576 kb on - strandat 2026.576 kb on - strandat 2026.576 kb on - strandat 2026.576 kb on - strandat 2026.576 kb on - strandat 2026.690 kb on + strandat 2026.690 kb on + strandat 2026.690 kb on + strandat 2026.690 kb on + strandat 2026.691 kb on - strandat 2026.691 kb on - strandat 2026.691 kb on - strandat 2026.691 kb on - strandat 2026.797 kb on + strandat 2026.797 kb on + strandat 2026.797 kb on + strandat 2026.797 kb on + strandat 2026.797 kb on + strandat 2026.797 kb on + strandat 2026.797 kb on + strandat 2026.797 kb on + strandat 2026.797 kb on + strandat 2026.797 kb on + strandat 2026.797 kb on + strandat 2026.797 kb on + strandat 2026.797 kb on + strandat 2026.797 kb on + strandat 2026.798 kb on - strandat 2026.798 kb on - strandat 2026.798 kb on - strandat 2026.798 kb on - strandat 2026.798 kb on - strandat 2026.798 kb on - strandat 2026.798 kb on - strandat 2026.798 kb on - strandat 2026.798 kb on - strandat 2026.798 kb on - strandat 2026.798 kb on - strandat 2026.798 kb on - strandat 2026.798 kb on - strandat 2026.798 kb on - strandat 2026.798 kb on - strandat 2026.798 kb on - strandat 2026.810 kb on + strandat 2026.928 kb on - strandat 2026.928 kb on - strandat 2026.933 kb on - strandat 2027.095 kb on + strand, within AO353_09235at 2027.096 kb on - strand, within AO353_09235at 2027.149 kb on + strand, within AO353_09235at 2027.149 kb on + strand, within AO353_09235at 2027.149 kb on + strand, within AO353_09235at 2027.149 kb on + strand, within AO353_09235at 2027.150 kb on - strand, within AO353_09235at 2027.150 kb on - strand, within AO353_09235at 2027.150 kb on - strand, within AO353_09235at 2027.150 kb on - strand, within AO353_09235at 2027.150 kb on - strand, within AO353_09235at 2027.150 kb on - strand, within AO353_09235at 2027.150 kb on - strand, within AO353_09235at 2027.152 kb on + strand, within AO353_09235at 2027.153 kb on - strand, within AO353_09235at 2027.218 kb on + strand, within AO353_09235at 2027.218 kb on + strand, within AO353_09235at 2027.219 kb on - strand, within AO353_09235at 2027.219 kb on - strand, within AO353_09235at 2027.219 kb on - strand, within AO353_09235at 2027.219 kb on - strand, within AO353_09235at 2027.219 kb on - strand, within AO353_09235at 2027.219 kb on - strand, within AO353_09235at 2027.219 kb on - strand, within AO353_09235at 2027.904 kb on + strand, within AO353_09235at 2027.904 kb on + strand, within AO353_09235at 2027.905 kb on - strand, within AO353_09235at 2027.905 kb on - strand, within AO353_09235at 2027.905 kb on - strand, within AO353_09235at 2027.905 kb on - strand, within AO353_09235at 2027.905 kb on - strand, within AO353_09235at 2027.905 kb on - strand, within AO353_09235at 2027.905 kb on - strand, within AO353_09235at 2027.908 kb on + strand, within AO353_09235at 2027.908 kb on + strand, within AO353_09235at 2027.908 kb on + strand, within AO353_09235at 2027.908 kb on + strand, within AO353_09235at 2027.909 kb on - strand, within AO353_09235at 2027.909 kb on - strand, within AO353_09235at 2027.988 kb on + strand, within AO353_09235at 2027.989 kb on - strand, within AO353_09235at 2027.994 kb on + strand, within AO353_09235at 2027.994 kb on + strand, within AO353_09235at 2027.995 kb on - strand, within AO353_09235at 2028.009 kb on + strand, within AO353_09235at 2028.116 kb on - strand, within AO353_09235at 2028.260 kb on + strandat 2028.260 kb on + strandat 2028.287 kb on + strandat 2028.288 kb on - strandat 2028.288 kb on - strandat 2028.369 kb on + strandat 2028.369 kb on + strandat 2028.369 kb on + strandat 2028.370 kb on - strandat 2028.370 kb on - strandat 2028.370 kb on - strandat 2028.370 kb on - strandat 2028.381 kb on + strandat 2028.408 kb on + strand, within AO353_09240at 2028.409 kb on - strand, within AO353_09240at 2028.888 kb on + strand, within AO353_09240at 2028.888 kb on + strand, within AO353_09240at 2028.888 kb on + strand, within AO353_09240at 2028.888 kb on + strand, within AO353_09240at 2028.889 kb on - strand, within AO353_09240at 2029.053 kb on + strand, within AO353_09240at 2029.053 kb on + strand, within AO353_09240at 2029.096 kb on + strand, within AO353_09240at 2029.212 kb on + strandat 2029.213 kb on - strandat 2029.213 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m-Inositol (C)
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2,026,111 + +0.7
2,026,111 + -0.4
2,026,111 + -0.9
2,026,575 + -0.1
2,026,575 + -0.5
2,026,575 + -0.2
2,026,575 + +1.5
2,026,575 + +0.3
2,026,575 + -0.4
2,026,576 - -0.4
2,026,576 - -0.7
2,026,576 - -0.1
2,026,576 - -0.1
2,026,576 - +0.2
2,026,690 + +0.3
2,026,690 + -0.7
2,026,690 + +0.1
2,026,690 + +0.3
2,026,691 - +0.2
2,026,691 - +1.3
2,026,691 - +0.1
2,026,691 - -0.2
2,026,797 + -0.1
2,026,797 + +0.6
2,026,797 + -0.5
2,026,797 + -0.5
2,026,797 + +2.1
2,026,797 + +0.6
2,026,797 + +1.1
2,026,797 + -1.0
2,026,797 + -0.1
2,026,797 + -1.2
2,026,797 + -1.1
2,026,797 + -0.5
2,026,797 + -0.4
2,026,797 + -0.2
2,026,798 - +0.0
2,026,798 - +0.5
2,026,798 - +0.9
2,026,798 - +1.1
2,026,798 - -0.3
2,026,798 - -0.4
2,026,798 - -1.4
2,026,798 - -0.5
2,026,798 - -0.5
2,026,798 - +0.6
2,026,798 - +1.2
2,026,798 - +0.6
2,026,798 - +1.4
2,026,798 - -1.1
2,026,798 - -0.3
2,026,798 - -0.9
2,026,810 + +0.7
2,026,928 - -0.6
2,026,928 - -0.6
2,026,933 - -0.1
2,027,095 + AO353_09235 0.16 -0.1
2,027,096 - AO353_09235 0.16 +0.1
2,027,149 + AO353_09235 0.20 +0.9
2,027,149 + AO353_09235 0.20 -1.8
2,027,149 + AO353_09235 0.20 -1.3
2,027,149 + AO353_09235 0.20 -1.1
2,027,150 - AO353_09235 0.20 -1.5
2,027,150 - AO353_09235 0.20 +0.9
2,027,150 - AO353_09235 0.20 -0.9
2,027,150 - AO353_09235 0.20 -0.5
2,027,150 - AO353_09235 0.20 -2.2
2,027,150 - AO353_09235 0.20 -0.5
2,027,150 - AO353_09235 0.20 -3.1
2,027,152 + AO353_09235 0.20 -0.1
2,027,153 - AO353_09235 0.20 -0.7
2,027,218 + AO353_09235 0.25 -1.2
2,027,218 + AO353_09235 0.25 -0.7
2,027,219 - AO353_09235 0.25 -0.8
2,027,219 - AO353_09235 0.25 -0.7
2,027,219 - AO353_09235 0.25 -0.5
2,027,219 - AO353_09235 0.25 +0.0
2,027,219 - AO353_09235 0.25 +0.5
2,027,219 - AO353_09235 0.25 -1.2
2,027,219 - AO353_09235 0.25 +0.1
2,027,904 + AO353_09235 0.74 +0.3
2,027,904 + AO353_09235 0.74 -0.9
2,027,905 - AO353_09235 0.74 -0.2
2,027,905 - AO353_09235 0.74 -0.7
2,027,905 - AO353_09235 0.74 -0.2
2,027,905 - AO353_09235 0.74 -1.9
2,027,905 - AO353_09235 0.74 -1.2
2,027,905 - AO353_09235 0.74 -0.5
2,027,905 - AO353_09235 0.74 -1.2
2,027,908 + AO353_09235 0.74 -0.7
2,027,908 + AO353_09235 0.74 -1.5
2,027,908 + AO353_09235 0.74 -0.7
2,027,908 + AO353_09235 0.74 -1.8
2,027,909 - AO353_09235 0.74 -2.4
2,027,909 - AO353_09235 0.74 -1.1
2,027,988 + AO353_09235 0.80 -0.7
2,027,989 - AO353_09235 0.80 -0.4
2,027,994 + AO353_09235 0.80 -0.9
2,027,994 + AO353_09235 0.80 -0.8
2,027,995 - AO353_09235 0.80 -0.3
2,028,009 + AO353_09235 0.81 -1.2
2,028,116 - AO353_09235 0.89 +0.1
2,028,260 + +1.1
2,028,260 + -1.9
2,028,287 + -0.8
2,028,288 - -1.8
2,028,288 - -1.2
2,028,369 + -1.5
2,028,369 + -2.7
2,028,369 + -0.7
2,028,370 - -1.4
2,028,370 - -1.2
2,028,370 - -1.2
2,028,370 - -0.1
2,028,381 + -0.9
2,028,408 + AO353_09240 0.11 -0.9
2,028,409 - AO353_09240 0.11 -1.4
2,028,888 + AO353_09240 0.64 -1.7
2,028,888 + AO353_09240 0.64 -0.7
2,028,888 + AO353_09240 0.64 -1.4
2,028,888 + AO353_09240 0.64 -2.0
2,028,889 - AO353_09240 0.64 -1.1
2,029,053 + AO353_09240 0.82 -0.1
2,029,053 + AO353_09240 0.82 -1.4
2,029,096 + AO353_09240 0.87 -1.9
2,029,212 + +0.3
2,029,213 - -0.5
2,029,213 - -0.1

Or see this region's nucleotide sequence