Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_05195

Experiment: m-Inositol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_05180 and AO353_05185 are separated by 109 nucleotidesAO353_05185 and AO353_05190 are separated by 12 nucleotidesAO353_05190 and AO353_05195 are separated by 2 nucleotidesAO353_05195 and AO353_05200 are separated by 15 nucleotidesAO353_05200 and AO353_05205 are separated by 218 nucleotides AO353_05180: AO353_05180 - RNA polymerase sigma-54 factor, at 1,139,535 to 1,141,028 _05180 AO353_05185: AO353_05185 - hypothetical protein, at 1,141,138 to 1,141,446 _05185 AO353_05190: AO353_05190 - PTS fructose transporter subunit IIA, at 1,141,459 to 1,141,923 _05190 AO353_05195: AO353_05195 - glmZ(sRNA)-inactivating NTPase, at 1,141,926 to 1,142,783 _05195 AO353_05200: AO353_05200 - phosphocarrier protein HPr, at 1,142,799 to 1,143,071 _05200 AO353_05205: AO353_05205 - peptidase PmbA, at 1,143,290 to 1,144,636 _05205 Position (kb) 1141 1142 1143Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 1141.041 kb on + strandat 1141.082 kb on + strandat 1141.110 kb on + strandat 1141.110 kb on + strandat 1141.137 kb on + strandat 1141.137 kb on + strandat 1141.137 kb on + strandat 1141.137 kb on + strandat 1141.137 kb on + strandat 1141.137 kb on + strandat 1141.137 kb on + strandat 1141.192 kb on + strand, within AO353_05185at 1141.192 kb on + strand, within AO353_05185at 1141.192 kb on + strand, within AO353_05185at 1141.192 kb on + strand, within AO353_05185at 1141.192 kb on + strand, within AO353_05185at 1141.192 kb on + strand, within AO353_05185at 1141.192 kb on + strand, within AO353_05185at 1141.192 kb on + strand, within AO353_05185at 1141.192 kb on + strand, within AO353_05185at 1141.217 kb on + strand, within AO353_05185at 1141.348 kb on + strand, within AO353_05185at 1141.348 kb on + strand, within AO353_05185at 1141.348 kb on + strand, within AO353_05185at 1141.348 kb on + strand, within AO353_05185at 1141.348 kb on + strand, within AO353_05185at 1141.348 kb on + strand, within AO353_05185at 1141.348 kb on + strand, within AO353_05185at 1141.348 kb on + strand, within AO353_05185at 1141.348 kb on + strand, within AO353_05185at 1141.348 kb on + strand, within AO353_05185at 1141.348 kb on + strand, within AO353_05185at 1141.348 kb on + strand, within AO353_05185at 1141.348 kb on + strand, within AO353_05185at 1141.348 kb on + strand, within AO353_05185at 1141.348 kb on + strand, within AO353_05185at 1141.348 kb on + strand, within AO353_05185at 1141.348 kb on + strand, within AO353_05185at 1141.401 kb on + strand, within AO353_05185at 1141.921 kb on + strandat 1141.921 kb on + strandat 1141.922 kb on - strandat 1141.922 kb on - strandat 1141.922 kb on - strandat 1141.922 kb on - strandat 1141.964 kb on + strandat 1141.970 kb on + strandat 1141.970 kb on + strandat 1141.971 kb on - strandat 1141.971 kb on - strandat 1141.984 kb on + strandat 1141.984 kb on + strandat 1141.984 kb on + strandat 1141.984 kb on + strandat 1141.985 kb on - strandat 1141.985 kb on - strandat 1141.985 kb on - strandat 1141.985 kb on - strandat 1141.985 kb on - strandat 1142.001 kb on + strandat 1142.001 kb on + strandat 1142.004 kb on + strandat 1142.005 kb on - strandat 1142.005 kb on - strandat 1142.005 kb on - strandat 1142.005 kb on - strandat 1142.005 kb on - strandat 1142.190 kb on + strand, within AO353_05195at 1142.191 kb on - strand, within AO353_05195at 1142.191 kb on - strand, within AO353_05195at 1142.364 kb on + strand, within AO353_05195at 1142.364 kb on + strand, within AO353_05195at 1142.364 kb on + strand, within AO353_05195at 1142.365 kb on - strand, within AO353_05195at 1142.365 kb on - strand, within AO353_05195at 1142.379 kb on - strand, within AO353_05195at 1142.488 kb on + strand, within AO353_05195at 1142.488 kb on + strand, within AO353_05195at 1142.488 kb on + strand, within AO353_05195at 1142.488 kb on + strand, within AO353_05195at 1142.488 kb on + strand, within AO353_05195at 1142.488 kb on + strand, within AO353_05195at 1142.488 kb on + strand, within AO353_05195at 1142.489 kb on - strand, within AO353_05195at 1142.489 kb on - strand, within AO353_05195at 1142.489 kb on - strand, within AO353_05195at 1142.489 kb on - strand, within AO353_05195at 1142.489 kb on - strand, within AO353_05195at 1142.489 kb on - strand, within AO353_05195at 1142.489 kb on - strand, within AO353_05195at 1142.489 kb on - strand, within AO353_05195at 1142.489 kb on - strand, within AO353_05195at 1142.489 kb on - strand, within AO353_05195at 1142.489 kb on - strand, within AO353_05195at 1142.489 kb on - strand, within AO353_05195at 1142.562 kb on + strand, within AO353_05195at 1142.613 kb on + strand, within AO353_05195at 1142.613 kb on + strand, within AO353_05195at 1142.613 kb on + strand, within AO353_05195at 1142.614 kb on - strand, within AO353_05195at 1142.614 kb on - strand, within AO353_05195at 1142.614 kb on - strand, within AO353_05195at 1142.614 kb on - strand, within AO353_05195at 1142.614 kb on - strand, within AO353_05195at 1142.614 kb on - strand, within AO353_05195at 1142.658 kb on + strand, within AO353_05195at 1142.658 kb on + strand, within AO353_05195at 1142.658 kb on + strand, within AO353_05195at 1142.658 kb on + strand, within AO353_05195at 1142.659 kb on - strand, within AO353_05195at 1142.659 kb on - strand, within AO353_05195at 1142.659 kb on - strand, within AO353_05195at 1142.659 kb on - strand, within AO353_05195at 1142.659 kb on - strand, within AO353_05195at 1142.706 kb on + strandat 1142.707 kb on - strandat 1142.777 kb on + strandat 1142.777 kb on + strandat 1142.777 kb on + strandat 1142.777 kb on + strandat 1142.778 kb on - strandat 1142.778 kb on - strandat 1142.778 kb on - strandat 1142.778 kb on - strandat 1142.778 kb on - strandat 1142.778 kb on - strandat 1142.778 kb on - strandat 1142.781 kb on + strandat 1142.781 kb on + strandat 1142.781 kb on + strandat 1142.782 kb on - strandat 1142.782 kb on - strandat 1143.051 kb on + strandat 1143.051 kb on + strandat 1143.051 kb on + strandat 1143.051 kb on + strandat 1143.051 kb on + strandat 1143.051 kb on + strandat 1143.051 kb on + strandat 1143.052 kb on - strandat 1143.052 kb on - strandat 1143.052 kb on - strandat 1143.052 kb on - strandat 1143.052 kb on - strandat 1143.052 kb on - strandat 1143.052 kb on - strandat 1143.052 kb on - strandat 1143.052 kb on - strandat 1143.069 kb on + strandat 1143.069 kb on + strandat 1143.086 kb on - strandat 1143.086 kb on - strandat 1143.086 kb on - strandat 1143.086 kb on - strandat 1143.086 kb on - strandat 1143.086 kb on - strandat 1143.086 kb on - strandat 1143.086 kb on - strandat 1143.086 kb on - strandat 1143.086 kb on - strandat 1143.086 kb on - strandat 1143.157 kb on - strandat 1143.157 kb on - strandat 1143.276 kb on + strandat 1143.291 kb on + strandat 1143.292 kb on - strandat 1143.391 kb on + strandat 1143.391 kb on + strandat 1143.391 kb on + strandat 1143.391 kb on + strandat 1143.391 kb on + strandat 1143.391 kb on + strandat 1143.391 kb on + strandat 1143.392 kb on - strandat 1143.392 kb on - strandat 1143.392 kb on - strandat 1143.412 kb on + strandat 1143.412 kb on + strandat 1143.412 kb on + strandat 1143.412 kb on + strandat 1143.412 kb on + strandat 1143.480 kb on + strand, within AO353_05205at 1143.480 kb on + strand, within AO353_05205at 1143.480 kb on + strand, within AO353_05205at 1143.480 kb on + strand, within AO353_05205at 1143.648 kb on + strand, within AO353_05205at 1143.648 kb on + strand, within AO353_05205at 1143.648 kb on + strand, within AO353_05205at 1143.648 kb on + strand, within AO353_05205at 1143.649 kb on - strand, within AO353_05205at 1143.649 kb on - strand, within AO353_05205at 1143.649 kb on - strand, within AO353_05205at 1143.652 kb on + strand, within AO353_05205at 1143.653 kb on - strand, within AO353_05205at 1143.663 kb on + strand, within AO353_05205at 1143.663 kb on + strand, within AO353_05205at 1143.663 kb on + strand, within AO353_05205at 1143.663 kb on + strand, within AO353_05205at 1143.663 kb on + strand, within AO353_05205at 1143.663 kb on + strand, within AO353_05205at 1143.663 kb on + strand, within AO353_05205at 1143.663 kb on + strand, within AO353_05205at 1143.663 kb on + strand, within AO353_05205at 1143.663 kb on + strand, within AO353_05205at 1143.663 kb on + strand, within AO353_05205at 1143.663 kb on + strand, within AO353_05205at 1143.663 kb on + strand, within AO353_05205at 1143.663 kb on + strand, within AO353_05205at 1143.663 kb on + strand, within AO353_05205at 1143.663 kb on + strand, within AO353_05205at 1143.663 kb on + strand, within AO353_05205at 1143.663 kb on + strand, within AO353_05205at 1143.663 kb on + strand, within AO353_05205at 1143.663 kb on + strand, within AO353_05205at 1143.663 kb on + strand, within AO353_05205at 1143.663 kb on + strand, within AO353_05205at 1143.663 kb on + strand, within AO353_05205at 1143.663 kb on + strand, within AO353_05205at 1143.663 kb on + strand, within AO353_05205at 1143.664 kb on - strand, within AO353_05205at 1143.664 kb on - strand, within AO353_05205at 1143.664 kb on - strand, within AO353_05205at 1143.664 kb on - strand, within AO353_05205at 1143.664 kb on - strand, within AO353_05205at 1143.664 kb on - strand, within AO353_05205at 1143.664 kb on - strand, within AO353_05205at 1143.664 kb on - strand, within AO353_05205at 1143.664 kb on - strand, within AO353_05205at 1143.664 kb on - strand, within AO353_05205at 1143.664 kb on - strand, within AO353_05205at 1143.664 kb on - strand, within AO353_05205at 1143.664 kb on - strand, within AO353_05205at 1143.664 kb on - strand, within AO353_05205at 1143.664 kb on - strand, within AO353_05205at 1143.664 kb on - strand, within AO353_05205at 1143.664 kb on - strand, within AO353_05205at 1143.664 kb on - strand, within AO353_05205at 1143.664 kb on - strand, within AO353_05205at 1143.664 kb on - strand, within AO353_05205at 1143.664 kb on - strand, within AO353_05205at 1143.664 kb on - strand, within AO353_05205at 1143.664 kb on - strand, within AO353_05205at 1143.702 kb on + strand, within AO353_05205at 1143.702 kb on + strand, within AO353_05205at 1143.702 kb on + strand, within AO353_05205at 1143.703 kb on - strand, within AO353_05205at 1143.703 kb on - strand, within AO353_05205at 1143.703 kb on - strand, within AO353_05205at 1143.703 kb on - strand, within AO353_05205

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Per-strain Table

Position Strand Gene LocusTag Fraction m-Inositol (C)
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1,141,041 + +0.9
1,141,082 + +0.4
1,141,110 + -1.3
1,141,110 + +0.4
1,141,137 + +0.6
1,141,137 + -0.2
1,141,137 + +0.1
1,141,137 + -2.4
1,141,137 + +0.7
1,141,137 + +1.1
1,141,137 + -0.6
1,141,192 + AO353_05185 0.17 +0.1
1,141,192 + AO353_05185 0.17 +0.1
1,141,192 + AO353_05185 0.17 +0.7
1,141,192 + AO353_05185 0.17 -0.2
1,141,192 + AO353_05185 0.17 -0.5
1,141,192 + AO353_05185 0.17 -1.6
1,141,192 + AO353_05185 0.17 +0.4
1,141,192 + AO353_05185 0.17 -0.1
1,141,192 + AO353_05185 0.17 +0.4
1,141,217 + AO353_05185 0.26 +0.8
1,141,348 + AO353_05185 0.68 +0.4
1,141,348 + AO353_05185 0.68 -0.2
1,141,348 + AO353_05185 0.68 -0.2
1,141,348 + AO353_05185 0.68 -0.3
1,141,348 + AO353_05185 0.68 +0.1
1,141,348 + AO353_05185 0.68 +0.4
1,141,348 + AO353_05185 0.68 -0.9
1,141,348 + AO353_05185 0.68 +0.1
1,141,348 + AO353_05185 0.68 +0.5
1,141,348 + AO353_05185 0.68 +0.2
1,141,348 + AO353_05185 0.68 -0.0
1,141,348 + AO353_05185 0.68 -0.3
1,141,348 + AO353_05185 0.68 +0.4
1,141,348 + AO353_05185 0.68 -0.5
1,141,348 + AO353_05185 0.68 -0.6
1,141,348 + AO353_05185 0.68 +0.7
1,141,348 + AO353_05185 0.68 +0.1
1,141,401 + AO353_05185 0.85 +0.1
1,141,921 + -1.3
1,141,921 + +1.1
1,141,922 - -1.5
1,141,922 - -2.7
1,141,922 - -1.1
1,141,922 - +1.7
1,141,964 + -2.0
1,141,970 + -0.4
1,141,970 + -1.3
1,141,971 - -2.3
1,141,971 - -1.8
1,141,984 + -1.4
1,141,984 + +0.7
1,141,984 + -1.4
1,141,984 + -0.9
1,141,985 - -0.0
1,141,985 - -0.9
1,141,985 - -1.6
1,141,985 - -2.3
1,141,985 - +0.2
1,142,001 + -0.6
1,142,001 + +0.4
1,142,004 + -2.3
1,142,005 - -1.3
1,142,005 - -2.1
1,142,005 - -0.8
1,142,005 - -1.6
1,142,005 - -1.4
1,142,190 + AO353_05195 0.31 -0.8
1,142,191 - AO353_05195 0.31 -2.7
1,142,191 - AO353_05195 0.31 -2.7
1,142,364 + AO353_05195 0.51 -1.3
1,142,364 + AO353_05195 0.51 -1.4
1,142,364 + AO353_05195 0.51 -1.9
1,142,365 - AO353_05195 0.51 -4.0
1,142,365 - AO353_05195 0.51 -1.8
1,142,379 - AO353_05195 0.53 -1.9
1,142,488 + AO353_05195 0.66 +0.1
1,142,488 + AO353_05195 0.66 -1.3
1,142,488 + AO353_05195 0.66 -0.5
1,142,488 + AO353_05195 0.66 -1.2
1,142,488 + AO353_05195 0.66 -0.5
1,142,488 + AO353_05195 0.66 -2.0
1,142,488 + AO353_05195 0.66 -1.3
1,142,489 - AO353_05195 0.66 -2.1
1,142,489 - AO353_05195 0.66 -0.8
1,142,489 - AO353_05195 0.66 -0.6
1,142,489 - AO353_05195 0.66 -0.8
1,142,489 - AO353_05195 0.66 -1.5
1,142,489 - AO353_05195 0.66 -0.0
1,142,489 - AO353_05195 0.66 -0.0
1,142,489 - AO353_05195 0.66 -1.0
1,142,489 - AO353_05195 0.66 -4.0
1,142,489 - AO353_05195 0.66 -0.3
1,142,489 - AO353_05195 0.66 -2.3
1,142,489 - AO353_05195 0.66 -1.3
1,142,562 + AO353_05195 0.74 -2.9
1,142,613 + AO353_05195 0.80 -1.2
1,142,613 + AO353_05195 0.80 -2.0
1,142,613 + AO353_05195 0.80 -1.1
1,142,614 - AO353_05195 0.80 -2.2
1,142,614 - AO353_05195 0.80 -0.2
1,142,614 - AO353_05195 0.80 -1.0
1,142,614 - AO353_05195 0.80 -1.1
1,142,614 - AO353_05195 0.80 -0.7
1,142,614 - AO353_05195 0.80 -1.1
1,142,658 + AO353_05195 0.85 -0.7
1,142,658 + AO353_05195 0.85 -1.2
1,142,658 + AO353_05195 0.85 -1.8
1,142,658 + AO353_05195 0.85 -1.0
1,142,659 - AO353_05195 0.85 -0.3
1,142,659 - AO353_05195 0.85 -2.4
1,142,659 - AO353_05195 0.85 +0.1
1,142,659 - AO353_05195 0.85 -2.7
1,142,659 - AO353_05195 0.85 -0.3
1,142,706 + +0.1
1,142,707 - -1.1
1,142,777 + +1.4
1,142,777 + +0.3
1,142,777 + +0.5
1,142,777 + +1.1
1,142,778 - -0.4
1,142,778 - +0.3
1,142,778 - +0.0
1,142,778 - +0.8
1,142,778 - +0.0
1,142,778 - -2.0
1,142,778 - +1.7
1,142,781 + -0.5
1,142,781 + +0.9
1,142,781 + -0.9
1,142,782 - -0.5
1,142,782 - +0.0
1,143,051 + +0.8
1,143,051 + -0.3
1,143,051 + +0.6
1,143,051 + +1.0
1,143,051 + +1.0
1,143,051 + -0.0
1,143,051 + -1.4
1,143,052 - -0.2
1,143,052 - +1.7
1,143,052 - -0.6
1,143,052 - +1.1
1,143,052 - +0.3
1,143,052 - +0.9
1,143,052 - +1.5
1,143,052 - +0.9
1,143,052 - +0.2
1,143,069 + +1.4
1,143,069 + -1.1
1,143,086 - +0.3
1,143,086 - +0.3
1,143,086 - -1.2
1,143,086 - +0.4
1,143,086 - -0.0
1,143,086 - +0.4
1,143,086 - +0.4
1,143,086 - -0.6
1,143,086 - +0.1
1,143,086 - -0.3
1,143,086 - -1.1
1,143,157 - +1.0
1,143,157 - -1.2
1,143,276 + +0.4
1,143,291 + -0.1
1,143,292 - +0.7
1,143,391 + -0.3
1,143,391 + -0.8
1,143,391 + +1.5
1,143,391 + +0.7
1,143,391 + -0.8
1,143,391 + -0.3
1,143,391 + +0.4
1,143,392 - +0.5
1,143,392 - -0.7
1,143,392 - -0.9
1,143,412 + +0.0
1,143,412 + +1.0
1,143,412 + -0.4
1,143,412 + +1.1
1,143,412 + +0.4
1,143,480 + AO353_05205 0.14 -1.2
1,143,480 + AO353_05205 0.14 -0.8
1,143,480 + AO353_05205 0.14 -0.5
1,143,480 + AO353_05205 0.14 -1.1
1,143,648 + AO353_05205 0.27 -0.6
1,143,648 + AO353_05205 0.27 -0.5
1,143,648 + AO353_05205 0.27 -1.0
1,143,648 + AO353_05205 0.27 -0.3
1,143,649 - AO353_05205 0.27 +0.0
1,143,649 - AO353_05205 0.27 -2.5
1,143,649 - AO353_05205 0.27 -2.2
1,143,652 + AO353_05205 0.27 -0.2
1,143,653 - AO353_05205 0.27 +1.1
1,143,663 + AO353_05205 0.28 +0.8
1,143,663 + AO353_05205 0.28 +0.4
1,143,663 + AO353_05205 0.28 -0.5
1,143,663 + AO353_05205 0.28 -0.7
1,143,663 + AO353_05205 0.28 +1.0
1,143,663 + AO353_05205 0.28 +1.4
1,143,663 + AO353_05205 0.28 -1.0
1,143,663 + AO353_05205 0.28 -0.5
1,143,663 + AO353_05205 0.28 +0.7
1,143,663 + AO353_05205 0.28 +0.4
1,143,663 + AO353_05205 0.28 +0.4
1,143,663 + AO353_05205 0.28 +0.8
1,143,663 + AO353_05205 0.28 +1.7
1,143,663 + AO353_05205 0.28 +1.4
1,143,663 + AO353_05205 0.28 +0.1
1,143,663 + AO353_05205 0.28 +2.0
1,143,663 + AO353_05205 0.28 +0.8
1,143,663 + AO353_05205 0.28 +0.6
1,143,663 + AO353_05205 0.28 +1.7
1,143,663 + AO353_05205 0.28 -0.2
1,143,663 + AO353_05205 0.28 -0.8
1,143,663 + AO353_05205 0.28 -0.0
1,143,663 + AO353_05205 0.28 +0.1
1,143,663 + AO353_05205 0.28 -1.5
1,143,663 + AO353_05205 0.28 -0.9
1,143,664 - AO353_05205 0.28 -1.3
1,143,664 - AO353_05205 0.28 -0.3
1,143,664 - AO353_05205 0.28 -0.6
1,143,664 - AO353_05205 0.28 +0.2
1,143,664 - AO353_05205 0.28 -0.4
1,143,664 - AO353_05205 0.28 -0.2
1,143,664 - AO353_05205 0.28 +1.3
1,143,664 - AO353_05205 0.28 +0.4
1,143,664 - AO353_05205 0.28 +0.7
1,143,664 - AO353_05205 0.28 -0.3
1,143,664 - AO353_05205 0.28 -0.1
1,143,664 - AO353_05205 0.28 -0.1
1,143,664 - AO353_05205 0.28 +0.5
1,143,664 - AO353_05205 0.28 -0.6
1,143,664 - AO353_05205 0.28 -1.9
1,143,664 - AO353_05205 0.28 -0.9
1,143,664 - AO353_05205 0.28 +0.3
1,143,664 - AO353_05205 0.28 -0.2
1,143,664 - AO353_05205 0.28 +1.0
1,143,664 - AO353_05205 0.28 +0.8
1,143,664 - AO353_05205 0.28 +0.0
1,143,664 - AO353_05205 0.28 +0.7
1,143,664 - AO353_05205 0.28 -1.0
1,143,702 + AO353_05205 0.31 -2.8
1,143,702 + AO353_05205 0.31 -0.1
1,143,702 + AO353_05205 0.31 -1.0
1,143,703 - AO353_05205 0.31 +1.1
1,143,703 - AO353_05205 0.31 -0.0
1,143,703 - AO353_05205 0.31 -0.3
1,143,703 - AO353_05205 0.31 +0.0

Or see this region's nucleotide sequence