Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_04075

Experiment: m-Inositol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_04065 and AO353_04070 overlap by 14 nucleotidesAO353_04070 and AO353_04075 overlap by 4 nucleotidesAO353_04075 and AO353_04080 overlap by 4 nucleotidesAO353_04080 and AO353_04085 are separated by 25 nucleotides AO353_04065: AO353_04065 - electron transporter RnfB, at 874,708 to 875,922 _04065 AO353_04070: AO353_04070 - electron transporter RnfD, at 875,909 to 876,907 _04070 AO353_04075: AO353_04075 - electron transporter RnfG, at 876,904 to 877,509 _04075 AO353_04080: AO353_04080 - NADH:quinone oxidoreductase, at 877,506 to 878,096 _04080 AO353_04085: AO353_04085 - endonuclease III, at 878,122 to 878,760 _04085 Position (kb) 876 877 878Strain fitness (log2 ratio) -2 -1 0 1 2at 875.908 kb on + strandat 875.908 kb on + strandat 875.908 kb on + strandat 875.908 kb on + strandat 875.909 kb on - strandat 875.909 kb on - strandat 875.909 kb on - strandat 875.909 kb on - strandat 875.909 kb on - strandat 875.909 kb on - strandat 875.909 kb on - strandat 875.909 kb on - strandat 875.964 kb on + strandat 876.003 kb on + strandat 876.003 kb on + strandat 876.089 kb on + strand, within AO353_04070at 876.090 kb on - strand, within AO353_04070at 876.157 kb on - strand, within AO353_04070at 876.164 kb on + strand, within AO353_04070at 876.164 kb on + strand, within AO353_04070at 876.164 kb on + strand, within AO353_04070at 876.164 kb on + strand, within AO353_04070at 876.164 kb on + strand, within AO353_04070at 876.164 kb on + strand, within AO353_04070at 876.165 kb on - strand, within AO353_04070at 876.165 kb on - strand, within AO353_04070at 876.165 kb on - strand, within AO353_04070at 876.165 kb on - strand, within AO353_04070at 876.165 kb on - strand, within AO353_04070at 876.165 kb on - strand, within AO353_04070at 876.165 kb on - strand, within AO353_04070at 876.165 kb on - strand, within AO353_04070at 876.282 kb on + strand, within AO353_04070at 876.283 kb on - strand, within AO353_04070at 876.283 kb on - strand, within AO353_04070at 876.283 kb on - strand, within AO353_04070at 876.283 kb on - strand, within AO353_04070at 876.424 kb on + strand, within AO353_04070at 876.500 kb on - strand, within AO353_04070at 876.505 kb on + strand, within AO353_04070at 876.506 kb on - strand, within AO353_04070at 876.552 kb on + strand, within AO353_04070at 876.707 kb on - strand, within AO353_04070at 876.785 kb on + strand, within AO353_04070at 876.785 kb on + strand, within AO353_04070at 876.785 kb on + strand, within AO353_04070at 876.785 kb on + strand, within AO353_04070at 876.786 kb on + strand, within AO353_04070at 876.786 kb on - strand, within AO353_04070at 876.786 kb on - strand, within AO353_04070at 876.786 kb on - strand, within AO353_04070at 876.898 kb on + strandat 876.898 kb on + strandat 876.899 kb on - strandat 876.899 kb on - strandat 876.899 kb on - strandat 876.899 kb on - strandat 877.060 kb on + strand, within AO353_04075at 877.061 kb on - strand, within AO353_04075at 877.061 kb on - strand, within AO353_04075at 877.061 kb on - strand, within AO353_04075at 877.102 kb on - strand, within AO353_04075at 877.124 kb on + strand, within AO353_04075at 877.124 kb on + strand, within AO353_04075at 877.124 kb on + strand, within AO353_04075at 877.125 kb on - strand, within AO353_04075at 877.172 kb on + strand, within AO353_04075at 877.172 kb on + strand, within AO353_04075at 877.172 kb on + strand, within AO353_04075at 877.172 kb on + strand, within AO353_04075at 877.173 kb on - strand, within AO353_04075at 877.173 kb on - strand, within AO353_04075at 877.173 kb on - strand, within AO353_04075at 877.175 kb on + strand, within AO353_04075at 877.175 kb on + strand, within AO353_04075at 877.176 kb on - strand, within AO353_04075at 877.176 kb on - strand, within AO353_04075at 877.176 kb on - strand, within AO353_04075at 877.176 kb on - strand, within AO353_04075at 877.465 kb on + strandat 877.465 kb on + strandat 877.466 kb on - strandat 877.466 kb on - strandat 877.540 kb on + strandat 877.541 kb on - strandat 877.576 kb on + strand, within AO353_04080at 877.576 kb on + strand, within AO353_04080at 877.577 kb on - strand, within AO353_04080at 877.577 kb on - strand, within AO353_04080at 877.642 kb on + strand, within AO353_04080at 877.642 kb on + strand, within AO353_04080at 877.642 kb on + strand, within AO353_04080at 877.642 kb on + strand, within AO353_04080at 877.642 kb on + strand, within AO353_04080at 877.642 kb on + strand, within AO353_04080at 877.642 kb on + strand, within AO353_04080at 877.643 kb on - strand, within AO353_04080at 877.643 kb on - strand, within AO353_04080at 877.643 kb on - strand, within AO353_04080at 877.643 kb on - strand, within AO353_04080at 877.643 kb on - strand, within AO353_04080at 877.643 kb on - strand, within AO353_04080at 877.643 kb on - strand, within AO353_04080at 877.643 kb on - strand, within AO353_04080at 877.643 kb on - strand, within AO353_04080at 877.643 kb on - strand, within AO353_04080at 877.643 kb on - strand, within AO353_04080at 877.643 kb on - strand, within AO353_04080at 877.730 kb on - strand, within AO353_04080at 877.730 kb on - strand, within AO353_04080at 877.770 kb on + strand, within AO353_04080at 877.770 kb on + strand, within AO353_04080at 877.770 kb on + strand, within AO353_04080at 877.770 kb on + strand, within AO353_04080at 877.770 kb on + strand, within AO353_04080at 877.770 kb on + strand, within AO353_04080at 877.770 kb on + strand, within AO353_04080at 877.770 kb on + strand, within AO353_04080at 877.770 kb on + strand, within AO353_04080at 877.771 kb on - strand, within AO353_04080at 877.771 kb on - strand, within AO353_04080at 877.771 kb on - strand, within AO353_04080at 877.771 kb on - strand, within AO353_04080at 877.771 kb on - strand, within AO353_04080at 877.771 kb on - strand, within AO353_04080at 877.771 kb on - strand, within AO353_04080at 877.771 kb on - strand, within AO353_04080at 877.771 kb on - strand, within AO353_04080at 877.771 kb on - strand, within AO353_04080at 877.809 kb on + strand, within AO353_04080at 877.809 kb on + strand, within AO353_04080at 877.809 kb on + strand, within AO353_04080at 877.810 kb on - strand, within AO353_04080at 877.810 kb on - strand, within AO353_04080at 877.885 kb on + strand, within AO353_04080at 877.885 kb on + strand, within AO353_04080at 877.886 kb on - strand, within AO353_04080at 877.886 kb on - strand, within AO353_04080at 877.886 kb on - strand, within AO353_04080at 877.886 kb on - strand, within AO353_04080at 877.886 kb on - strand, within AO353_04080at 877.956 kb on - strand, within AO353_04080at 878.002 kb on + strand, within AO353_04080at 878.002 kb on + strand, within AO353_04080at 878.002 kb on + strand, within AO353_04080at 878.003 kb on - strand, within AO353_04080at 878.003 kb on - strand, within AO353_04080at 878.033 kb on + strand, within AO353_04080at 878.034 kb on - strand, within AO353_04080at 878.034 kb on - strand, within AO353_04080at 878.053 kb on + strandat 878.053 kb on + strandat 878.053 kb on + strandat 878.054 kb on - strandat 878.197 kb on + strand, within AO353_04085at 878.198 kb on - strand, within AO353_04085at 878.198 kb on - strand, within AO353_04085at 878.255 kb on + strand, within AO353_04085at 878.255 kb on + strand, within AO353_04085at 878.256 kb on - strand, within AO353_04085at 878.256 kb on - strand, within AO353_04085at 878.256 kb on - strand, within AO353_04085at 878.256 kb on - strand, within AO353_04085at 878.256 kb on - strand, within AO353_04085at 878.256 kb on - strand, within AO353_04085at 878.265 kb on + strand, within AO353_04085at 878.265 kb on + strand, within AO353_04085at 878.266 kb on - strand, within AO353_04085at 878.266 kb on - strand, within AO353_04085at 878.266 kb on - strand, within AO353_04085at 878.298 kb on + strand, within AO353_04085at 878.298 kb on + strand, within AO353_04085at 878.299 kb on - strand, within AO353_04085at 878.299 kb on - strand, within AO353_04085at 878.299 kb on - strand, within AO353_04085at 878.299 kb on - strand, within AO353_04085at 878.314 kb on + strand, within AO353_04085at 878.314 kb on + strand, within AO353_04085at 878.314 kb on + strand, within AO353_04085at 878.314 kb on + strand, within AO353_04085at 878.314 kb on + strand, within AO353_04085at 878.314 kb on + strand, within AO353_04085at 878.314 kb on + strand, within AO353_04085at 878.315 kb on - strand, within AO353_04085at 878.315 kb on - strand, within AO353_04085at 878.315 kb on - strand, within AO353_04085at 878.315 kb on - strand, within AO353_04085at 878.315 kb on - strand, within AO353_04085at 878.315 kb on - strand, within AO353_04085at 878.315 kb on - strand, within AO353_04085at 878.315 kb on - strand, within AO353_04085at 878.315 kb on - strand, within AO353_04085at 878.315 kb on - strand, within AO353_04085at 878.315 kb on - strand, within AO353_04085at 878.315 kb on - strand, within AO353_04085at 878.315 kb on - strand, within AO353_04085at 878.327 kb on + strand, within AO353_04085at 878.327 kb on + strand, within AO353_04085at 878.327 kb on + strand, within AO353_04085at 878.328 kb on - strand, within AO353_04085at 878.328 kb on - strand, within AO353_04085at 878.328 kb on - strand, within AO353_04085at 878.328 kb on - strand, within AO353_04085at 878.344 kb on + strand, within AO353_04085at 878.344 kb on + strand, within AO353_04085at 878.344 kb on + strand, within AO353_04085at 878.345 kb on - strand, within AO353_04085at 878.345 kb on - strandat 878.345 kb on - strand, within AO353_04085at 878.357 kb on + strand, within AO353_04085at 878.357 kb on + strand, within AO353_04085at 878.358 kb on - strand, within AO353_04085at 878.358 kb on - strand, within AO353_04085at 878.358 kb on - strand, within AO353_04085at 878.358 kb on - strand, within AO353_04085at 878.358 kb on - strand, within AO353_04085at 878.358 kb on - strand, within AO353_04085at 878.365 kb on + strand, within AO353_04085at 878.365 kb on + strand, within AO353_04085at 878.365 kb on + strand, within AO353_04085at 878.365 kb on + strand, within AO353_04085at 878.365 kb on + strand, within AO353_04085at 878.365 kb on + strand, within AO353_04085at 878.365 kb on + strand, within AO353_04085at 878.366 kb on - strand, within AO353_04085at 878.366 kb on - strand, within AO353_04085at 878.366 kb on - strand, within AO353_04085at 878.366 kb on - strand, within AO353_04085at 878.390 kb on + strand, within AO353_04085at 878.390 kb on + strand, within AO353_04085at 878.391 kb on - strandat 878.391 kb on - strand, within AO353_04085at 878.391 kb on - strand, within AO353_04085at 878.391 kb on - strand, within AO353_04085at 878.391 kb on - strand, within AO353_04085at 878.391 kb on - strand, within AO353_04085at 878.412 kb on - strand, within AO353_04085at 878.432 kb on + strand, within AO353_04085at 878.432 kb on + strand, within AO353_04085at 878.432 kb on + strand, within AO353_04085at 878.433 kb on - strand, within AO353_04085at 878.433 kb on - strand, within AO353_04085at 878.475 kb on + strand, within AO353_04085at 878.476 kb on - strand, within AO353_04085at 878.476 kb on - strand, within AO353_04085at 878.502 kb on + strand, within AO353_04085

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Per-strain Table

Position Strand Gene LocusTag Fraction m-Inositol (C)
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875,908 + +1.4
875,908 + +0.1
875,908 + -0.4
875,908 + -1.5
875,909 - +0.3
875,909 - +0.6
875,909 - +0.3
875,909 - -0.1
875,909 - -2.5
875,909 - -0.7
875,909 - +0.8
875,909 - +0.1
875,964 + +1.4
876,003 + +0.6
876,003 + -0.9
876,089 + AO353_04070 0.18 -0.4
876,090 - AO353_04070 0.18 +0.6
876,157 - AO353_04070 0.25 +0.1
876,164 + AO353_04070 0.26 +0.9
876,164 + AO353_04070 0.26 +0.6
876,164 + AO353_04070 0.26 -0.8
876,164 + AO353_04070 0.26 -1.8
876,164 + AO353_04070 0.26 +1.2
876,164 + AO353_04070 0.26 +1.2
876,165 - AO353_04070 0.26 -0.9
876,165 - AO353_04070 0.26 -1.5
876,165 - AO353_04070 0.26 +0.1
876,165 - AO353_04070 0.26 +2.1
876,165 - AO353_04070 0.26 +0.6
876,165 - AO353_04070 0.26 -1.1
876,165 - AO353_04070 0.26 -1.7
876,165 - AO353_04070 0.26 +0.6
876,282 + AO353_04070 0.37 +0.1
876,283 - AO353_04070 0.37 +1.0
876,283 - AO353_04070 0.37 +0.2
876,283 - AO353_04070 0.37 -0.2
876,283 - AO353_04070 0.37 -0.9
876,424 + AO353_04070 0.52 -0.1
876,500 - AO353_04070 0.59 +0.3
876,505 + AO353_04070 0.60 -0.4
876,506 - AO353_04070 0.60 -0.8
876,552 + AO353_04070 0.64 +0.1
876,707 - AO353_04070 0.80 -0.1
876,785 + AO353_04070 0.88 -0.8
876,785 + AO353_04070 0.88 +0.4
876,785 + AO353_04070 0.88 -0.5
876,785 + AO353_04070 0.88 -0.9
876,786 + AO353_04070 0.88 -0.2
876,786 - AO353_04070 0.88 +0.1
876,786 - AO353_04070 0.88 -1.3
876,786 - AO353_04070 0.88 +0.5
876,898 + -0.1
876,898 + -0.4
876,899 - -0.7
876,899 - +0.3
876,899 - -0.5
876,899 - +0.0
877,060 + AO353_04075 0.26 +1.5
877,061 - AO353_04075 0.26 +1.3
877,061 - AO353_04075 0.26 +1.2
877,061 - AO353_04075 0.26 +0.5
877,102 - AO353_04075 0.33 +0.7
877,124 + AO353_04075 0.36 -0.4
877,124 + AO353_04075 0.36 +0.6
877,124 + AO353_04075 0.36 -0.5
877,125 - AO353_04075 0.36 -0.7
877,172 + AO353_04075 0.44 +0.2
877,172 + AO353_04075 0.44 -0.1
877,172 + AO353_04075 0.44 +1.0
877,172 + AO353_04075 0.44 +1.5
877,173 - AO353_04075 0.44 +0.2
877,173 - AO353_04075 0.44 +0.1
877,173 - AO353_04075 0.44 +0.6
877,175 + AO353_04075 0.45 -1.2
877,175 + AO353_04075 0.45 +0.0
877,176 - AO353_04075 0.45 +1.6
877,176 - AO353_04075 0.45 +0.6
877,176 - AO353_04075 0.45 +0.5
877,176 - AO353_04075 0.45 +0.6
877,465 + +0.0
877,465 + -0.7
877,466 - +1.2
877,466 - +0.4
877,540 + -0.5
877,541 - -0.9
877,576 + AO353_04080 0.12 +0.3
877,576 + AO353_04080 0.12 -1.2
877,577 - AO353_04080 0.12 +1.6
877,577 - AO353_04080 0.12 -0.2
877,642 + AO353_04080 0.23 -0.7
877,642 + AO353_04080 0.23 -0.3
877,642 + AO353_04080 0.23 -1.5
877,642 + AO353_04080 0.23 -0.9
877,642 + AO353_04080 0.23 +0.1
877,642 + AO353_04080 0.23 -1.4
877,642 + AO353_04080 0.23 -1.4
877,643 - AO353_04080 0.23 +0.1
877,643 - AO353_04080 0.23 +0.9
877,643 - AO353_04080 0.23 +0.9
877,643 - AO353_04080 0.23 -1.4
877,643 - AO353_04080 0.23 -0.2
877,643 - AO353_04080 0.23 -0.9
877,643 - AO353_04080 0.23 -0.9
877,643 - AO353_04080 0.23 +0.5
877,643 - AO353_04080 0.23 +0.1
877,643 - AO353_04080 0.23 -0.4
877,643 - AO353_04080 0.23 +0.6
877,643 - AO353_04080 0.23 -0.7
877,730 - AO353_04080 0.38 +0.3
877,730 - AO353_04080 0.38 -0.4
877,770 + AO353_04080 0.45 +0.8
877,770 + AO353_04080 0.45 +0.2
877,770 + AO353_04080 0.45 -0.8
877,770 + AO353_04080 0.45 +0.3
877,770 + AO353_04080 0.45 -0.2
877,770 + AO353_04080 0.45 -1.2
877,770 + AO353_04080 0.45 -0.0
877,770 + AO353_04080 0.45 -1.1
877,770 + AO353_04080 0.45 +0.8
877,771 - AO353_04080 0.45 -0.6
877,771 - AO353_04080 0.45 +0.9
877,771 - AO353_04080 0.45 -0.5
877,771 - AO353_04080 0.45 +0.6
877,771 - AO353_04080 0.45 +0.1
877,771 - AO353_04080 0.45 -0.1
877,771 - AO353_04080 0.45 +2.2
877,771 - AO353_04080 0.45 +0.6
877,771 - AO353_04080 0.45 +0.4
877,771 - AO353_04080 0.45 -0.2
877,809 + AO353_04080 0.51 -0.7
877,809 + AO353_04080 0.51 +0.2
877,809 + AO353_04080 0.51 -0.0
877,810 - AO353_04080 0.51 -0.7
877,810 - AO353_04080 0.51 +1.1
877,885 + AO353_04080 0.64 -1.1
877,885 + AO353_04080 0.64 -0.5
877,886 - AO353_04080 0.64 +0.3
877,886 - AO353_04080 0.64 +0.8
877,886 - AO353_04080 0.64 +0.6
877,886 - AO353_04080 0.64 -0.7
877,886 - AO353_04080 0.64 -2.5
877,956 - AO353_04080 0.76 -0.1
878,002 + AO353_04080 0.84 -0.4
878,002 + AO353_04080 0.84 +0.6
878,002 + AO353_04080 0.84 +1.1
878,003 - AO353_04080 0.84 +0.3
878,003 - AO353_04080 0.84 -1.7
878,033 + AO353_04080 0.89 +0.5
878,034 - AO353_04080 0.89 -1.2
878,034 - AO353_04080 0.89 +1.1
878,053 + +0.6
878,053 + -0.1
878,053 + +0.6
878,054 - +1.5
878,197 + AO353_04085 0.12 -1.4
878,198 - AO353_04085 0.12 +0.0
878,198 - AO353_04085 0.12 -0.1
878,255 + AO353_04085 0.21 -0.1
878,255 + AO353_04085 0.21 -0.0
878,256 - AO353_04085 0.21 -0.4
878,256 - AO353_04085 0.21 -0.1
878,256 - AO353_04085 0.21 -1.5
878,256 - AO353_04085 0.21 +1.1
878,256 - AO353_04085 0.21 -0.4
878,256 - AO353_04085 0.21 -0.0
878,265 + AO353_04085 0.22 +0.2
878,265 + AO353_04085 0.22 +1.2
878,266 - AO353_04085 0.23 +1.2
878,266 - AO353_04085 0.23 -1.1
878,266 - AO353_04085 0.23 +1.1
878,298 + AO353_04085 0.28 -1.6
878,298 + AO353_04085 0.28 +0.4
878,299 - AO353_04085 0.28 -0.7
878,299 - AO353_04085 0.28 -0.2
878,299 - AO353_04085 0.28 -0.7
878,299 - AO353_04085 0.28 -0.2
878,314 + AO353_04085 0.30 +0.2
878,314 + AO353_04085 0.30 +0.1
878,314 + AO353_04085 0.30 +0.1
878,314 + AO353_04085 0.30 -1.8
878,314 + AO353_04085 0.30 +0.5
878,314 + AO353_04085 0.30 +0.1
878,314 + AO353_04085 0.30 +0.5
878,315 - AO353_04085 0.30 -0.9
878,315 - AO353_04085 0.30 +0.3
878,315 - AO353_04085 0.30 +1.4
878,315 - AO353_04085 0.30 +0.6
878,315 - AO353_04085 0.30 +0.6
878,315 - AO353_04085 0.30 +1.1
878,315 - AO353_04085 0.30 +0.3
878,315 - AO353_04085 0.30 -0.2
878,315 - AO353_04085 0.30 -0.3
878,315 - AO353_04085 0.30 -0.1
878,315 - AO353_04085 0.30 -0.2
878,315 - AO353_04085 0.30 -0.9
878,315 - AO353_04085 0.30 -1.5
878,327 + AO353_04085 0.32 -0.7
878,327 + AO353_04085 0.32 +0.4
878,327 + AO353_04085 0.32 +0.3
878,328 - AO353_04085 0.32 -1.5
878,328 - AO353_04085 0.32 -0.5
878,328 - AO353_04085 0.32 -1.4
878,328 - AO353_04085 0.32 +0.6
878,344 + AO353_04085 0.35 -1.6
878,344 + AO353_04085 0.35 +1.6
878,344 + AO353_04085 0.35 +1.0
878,345 - AO353_04085 0.35 +0.5
878,345 - -0.9
878,345 - AO353_04085 0.35 +1.1
878,357 + AO353_04085 0.37 -0.2
878,357 + AO353_04085 0.37 -0.3
878,358 - AO353_04085 0.37 +1.2
878,358 - AO353_04085 0.37 -2.2
878,358 - AO353_04085 0.37 -0.1
878,358 - AO353_04085 0.37 +1.0
878,358 - AO353_04085 0.37 -0.4
878,358 - AO353_04085 0.37 -0.7
878,365 + AO353_04085 0.38 +1.6
878,365 + AO353_04085 0.38 -1.1
878,365 + AO353_04085 0.38 -0.6
878,365 + AO353_04085 0.38 -0.8
878,365 + AO353_04085 0.38 +0.2
878,365 + AO353_04085 0.38 -0.4
878,365 + AO353_04085 0.38 +0.3
878,366 - AO353_04085 0.38 +0.6
878,366 - AO353_04085 0.38 -1.1
878,366 - AO353_04085 0.38 +0.8
878,366 - AO353_04085 0.38 +1.1
878,390 + AO353_04085 0.42 +1.9
878,390 + AO353_04085 0.42 -0.5
878,391 - -0.4
878,391 - AO353_04085 0.42 -0.4
878,391 - AO353_04085 0.42 +0.5
878,391 - AO353_04085 0.42 +0.6
878,391 - AO353_04085 0.42 +0.1
878,391 - AO353_04085 0.42 +1.6
878,412 - AO353_04085 0.45 +0.9
878,432 + AO353_04085 0.49 -0.2
878,432 + AO353_04085 0.49 +0.6
878,432 + AO353_04085 0.49 -0.8
878,433 - AO353_04085 0.49 -2.5
878,433 - AO353_04085 0.49 +0.6
878,475 + AO353_04085 0.55 +0.6
878,476 - AO353_04085 0.55 -0.5
878,476 - AO353_04085 0.55 -1.4
878,502 + AO353_04085 0.59 -0.2

Or see this region's nucleotide sequence