Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_02720

Experiment: m-Inositol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_02715 and AO353_02720 overlap by 1 nucleotidesAO353_02720 and AO353_02725 are separated by 210 nucleotidesAO353_02725 and AO353_02730 are separated by 37 nucleotides AO353_02715: AO353_02715 - 23S rRNA methyltransferase, at 577,144 to 578,496 _02715 AO353_02720: AO353_02720 - cysteine synthase, at 578,496 to 579,398 _02720 AO353_02725: AO353_02725 - histidine kinase, at 579,609 to 580,298 _02725 AO353_02730: AO353_02730 - transcriptional regulator, at 580,336 to 581,058 _02730 Position (kb) 578 579 580Strain fitness (log2 ratio) -2 -1 0 1 2at 577.549 kb on - strand, within AO353_02715at 577.948 kb on + strand, within AO353_02715at 577.948 kb on + strand, within AO353_02715at 578.355 kb on + strand, within AO353_02715at 578.355 kb on + strand, within AO353_02715at 578.356 kb on - strand, within AO353_02715at 578.530 kb on + strandat 578.607 kb on + strand, within AO353_02720at 578.726 kb on - strand, within AO353_02720at 578.726 kb on - strand, within AO353_02720at 578.726 kb on - strand, within AO353_02720at 578.726 kb on - strand, within AO353_02720at 578.740 kb on + strand, within AO353_02720at 578.740 kb on + strand, within AO353_02720at 578.740 kb on + strand, within AO353_02720at 578.740 kb on + strand, within AO353_02720at 578.740 kb on + strand, within AO353_02720at 578.741 kb on - strand, within AO353_02720at 578.741 kb on - strand, within AO353_02720at 578.833 kb on + strand, within AO353_02720at 578.888 kb on + strand, within AO353_02720at 578.889 kb on - strand, within AO353_02720at 578.889 kb on - strand, within AO353_02720at 578.935 kb on + strand, within AO353_02720at 578.936 kb on - strand, within AO353_02720at 578.936 kb on - strand, within AO353_02720at 578.936 kb on - strand, within AO353_02720at 578.936 kb on - strand, within AO353_02720at 578.936 kb on - strand, within AO353_02720at 579.284 kb on + strand, within AO353_02720at 579.386 kb on - strandat 579.404 kb on - strandat 579.436 kb on + strandat 579.436 kb on + strandat 579.437 kb on - strandat 579.496 kb on - strandat 579.598 kb on - strandat 579.610 kb on + strandat 579.629 kb on + strandat 579.629 kb on + strandat 579.630 kb on - strandat 579.630 kb on - strandat 579.630 kb on - strandat 579.630 kb on - strandat 579.773 kb on + strand, within AO353_02725at 579.773 kb on + strand, within AO353_02725at 579.773 kb on + strand, within AO353_02725at 579.773 kb on + strand, within AO353_02725at 579.773 kb on + strand, within AO353_02725at 579.773 kb on + strand, within AO353_02725at 579.773 kb on + strand, within AO353_02725at 579.773 kb on + strand, within AO353_02725at 579.773 kb on + strand, within AO353_02725at 579.774 kb on - strand, within AO353_02725at 579.774 kb on - strand, within AO353_02725at 579.774 kb on - strand, within AO353_02725at 579.774 kb on - strand, within AO353_02725at 579.774 kb on - strand, within AO353_02725at 579.774 kb on - strand, within AO353_02725at 579.774 kb on - strand, within AO353_02725at 579.774 kb on - strand, within AO353_02725at 579.774 kb on - strand, within AO353_02725at 579.774 kb on - strand, within AO353_02725at 579.774 kb on - strand, within AO353_02725at 579.774 kb on - strand, within AO353_02725at 579.774 kb on - strand, within AO353_02725at 579.774 kb on - strand, within AO353_02725at 579.832 kb on + strand, within AO353_02725at 579.832 kb on + strand, within AO353_02725at 579.832 kb on + strand, within AO353_02725at 579.833 kb on - strand, within AO353_02725at 579.833 kb on - strand, within AO353_02725at 579.833 kb on - strand, within AO353_02725at 579.833 kb on - strand, within AO353_02725at 579.929 kb on + strand, within AO353_02725at 579.929 kb on + strand, within AO353_02725at 579.929 kb on + strand, within AO353_02725at 579.929 kb on + strand, within AO353_02725at 579.929 kb on + strand, within AO353_02725at 579.929 kb on + strand, within AO353_02725at 579.929 kb on + strand, within AO353_02725at 579.930 kb on - strand, within AO353_02725at 579.930 kb on - strand, within AO353_02725at 579.930 kb on - strand, within AO353_02725at 580.003 kb on + strand, within AO353_02725at 580.004 kb on - strand, within AO353_02725at 580.041 kb on + strand, within AO353_02725at 580.041 kb on + strand, within AO353_02725at 580.041 kb on + strand, within AO353_02725at 580.042 kb on - strand, within AO353_02725at 580.110 kb on + strand, within AO353_02725at 580.111 kb on - strand, within AO353_02725at 580.111 kb on - strand, within AO353_02725at 580.111 kb on - strand, within AO353_02725at 580.155 kb on + strand, within AO353_02725at 580.155 kb on + strand, within AO353_02725at 580.155 kb on + strand, within AO353_02725at 580.156 kb on - strand, within AO353_02725at 580.156 kb on - strand, within AO353_02725at 580.236 kb on + strandat 580.363 kb on + strandat 580.363 kb on + strandat 580.363 kb on + strandat 580.363 kb on + strandat 580.363 kb on + strandat 580.363 kb on + strandat 580.363 kb on + strandat 580.363 kb on + strandat 580.363 kb on + strandat 580.363 kb on + strandat 580.363 kb on + strandat 580.363 kb on + strandat 580.363 kb on + strandat 580.363 kb on + strandat 580.363 kb on + strandat 580.363 kb on + strandat 580.363 kb on + strandat 580.364 kb on - strandat 580.364 kb on - strandat 580.364 kb on - strandat 580.364 kb on - strandat 580.364 kb on - strandat 580.364 kb on - strandat 580.364 kb on - strandat 580.364 kb on - strandat 580.364 kb on - strandat 580.364 kb on - strandat 580.364 kb on - strandat 580.367 kb on + strandat 580.367 kb on + strandat 580.367 kb on + strandat 580.367 kb on + strandat 580.367 kb on + strandat 580.367 kb on + strandat 580.368 kb on - strandat 580.368 kb on - strandat 580.368 kb on - strandat 580.368 kb on - strandat 580.368 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m-Inositol (C)
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577,549 - AO353_02715 0.30 +0.9
577,948 + AO353_02715 0.59 -0.4
577,948 + AO353_02715 0.59 -0.8
578,355 + AO353_02715 0.90 -0.0
578,355 + AO353_02715 0.90 -0.3
578,356 - AO353_02715 0.90 +1.1
578,530 + -0.0
578,607 + AO353_02720 0.12 -1.0
578,726 - AO353_02720 0.25 -0.9
578,726 - AO353_02720 0.25 -0.9
578,726 - AO353_02720 0.25 +0.6
578,726 - AO353_02720 0.25 -0.2
578,740 + AO353_02720 0.27 -1.2
578,740 + AO353_02720 0.27 -1.8
578,740 + AO353_02720 0.27 -1.0
578,740 + AO353_02720 0.27 -0.3
578,740 + AO353_02720 0.27 -0.0
578,741 - AO353_02720 0.27 -1.4
578,741 - AO353_02720 0.27 +0.4
578,833 + AO353_02720 0.37 +0.6
578,888 + AO353_02720 0.43 -2.0
578,889 - AO353_02720 0.44 +0.6
578,889 - AO353_02720 0.44 -1.5
578,935 + AO353_02720 0.49 +0.1
578,936 - AO353_02720 0.49 +0.2
578,936 - AO353_02720 0.49 -1.8
578,936 - AO353_02720 0.49 +0.3
578,936 - AO353_02720 0.49 +0.2
578,936 - AO353_02720 0.49 -1.4
579,284 + AO353_02720 0.87 -1.6
579,386 - -0.4
579,404 - -1.9
579,436 + -0.0
579,436 + -1.4
579,437 - -0.6
579,496 - +0.1
579,598 - -0.3
579,610 + -0.0
579,629 + +1.0
579,629 + -0.0
579,630 - +0.1
579,630 - -1.2
579,630 - +0.6
579,630 - -0.3
579,773 + AO353_02725 0.24 -0.0
579,773 + AO353_02725 0.24 +0.6
579,773 + AO353_02725 0.24 +1.6
579,773 + AO353_02725 0.24 -1.5
579,773 + AO353_02725 0.24 -0.5
579,773 + AO353_02725 0.24 +0.6
579,773 + AO353_02725 0.24 +1.0
579,773 + AO353_02725 0.24 +0.3
579,773 + AO353_02725 0.24 -0.0
579,774 - AO353_02725 0.24 -0.3
579,774 - AO353_02725 0.24 -0.2
579,774 - AO353_02725 0.24 +0.9
579,774 - AO353_02725 0.24 -0.4
579,774 - AO353_02725 0.24 -0.0
579,774 - AO353_02725 0.24 -0.4
579,774 - AO353_02725 0.24 -0.0
579,774 - AO353_02725 0.24 +2.4
579,774 - AO353_02725 0.24 -0.1
579,774 - AO353_02725 0.24 +0.9
579,774 - AO353_02725 0.24 +0.8
579,774 - AO353_02725 0.24 -0.3
579,774 - AO353_02725 0.24 +0.1
579,774 - AO353_02725 0.24 +0.3
579,832 + AO353_02725 0.32 -1.2
579,832 + AO353_02725 0.32 +1.6
579,832 + AO353_02725 0.32 +1.6
579,833 - AO353_02725 0.32 -0.9
579,833 - AO353_02725 0.32 +0.4
579,833 - AO353_02725 0.32 -2.3
579,833 - AO353_02725 0.32 +1.0
579,929 + AO353_02725 0.46 +0.1
579,929 + AO353_02725 0.46 +0.7
579,929 + AO353_02725 0.46 -0.6
579,929 + AO353_02725 0.46 -0.6
579,929 + AO353_02725 0.46 -0.4
579,929 + AO353_02725 0.46 -0.6
579,929 + AO353_02725 0.46 +0.3
579,930 - AO353_02725 0.47 -0.6
579,930 - AO353_02725 0.47 -0.2
579,930 - AO353_02725 0.47 +0.7
580,003 + AO353_02725 0.57 +0.2
580,004 - AO353_02725 0.57 +0.6
580,041 + AO353_02725 0.63 +0.5
580,041 + AO353_02725 0.63 -0.2
580,041 + AO353_02725 0.63 -1.9
580,042 - AO353_02725 0.63 -1.4
580,110 + AO353_02725 0.73 -0.0
580,111 - AO353_02725 0.73 -0.9
580,111 - AO353_02725 0.73 +0.9
580,111 - AO353_02725 0.73 +0.3
580,155 + AO353_02725 0.79 +0.2
580,155 + AO353_02725 0.79 +0.6
580,155 + AO353_02725 0.79 +0.2
580,156 - AO353_02725 0.79 -0.0
580,156 - AO353_02725 0.79 -0.2
580,236 + +0.2
580,363 + -2.0
580,363 + +0.4
580,363 + +0.6
580,363 + -0.3
580,363 + -0.6
580,363 + -0.1
580,363 + -0.2
580,363 + +0.9
580,363 + +0.8
580,363 + -0.0
580,363 + -1.0
580,363 + +1.6
580,363 + -1.2
580,363 + +1.6
580,363 + -0.2
580,363 + +0.8
580,363 + +1.4
580,364 - +0.6
580,364 - -0.8
580,364 - +0.3
580,364 - +0.6
580,364 - -1.2
580,364 - +0.7
580,364 - -0.8
580,364 - +1.6
580,364 - +0.6
580,364 - +1.3
580,364 - +0.2
580,367 + -0.1
580,367 + +0.6
580,367 + +2.4
580,367 + -1.0
580,367 + -0.3
580,367 + +0.6
580,368 - +0.6
580,368 - -0.4
580,368 - +0.8
580,368 - +0.3
580,368 - -0.5

Or see this region's nucleotide sequence