Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_02270

Experiment: m-Inositol (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntAO353_02265 and AO353_02270 are separated by 238 nucleotidesAO353_02270 and AO353_02275 are separated by 132 nucleotidesAO353_02275 and AO353_02280 are separated by 75 nucleotides AO353_02265: AO353_02265 - protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific, at 484,246 to 485,154 _02265 AO353_02270: AO353_02270 - isochorismatase, at 485,393 to 485,983 _02270 AO353_02275: AO353_02275 - hypothetical protein, at 486,116 to 486,436 _02275 AO353_02280: AO353_02280 - DNA mismatch repair protein MutS, at 486,512 to 487,069 _02280 Position (kb) 485 486Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 484.509 kb on - strand, within AO353_02265at 484.547 kb on + strand, within AO353_02265at 484.548 kb on - strand, within AO353_02265at 484.548 kb on - strand, within AO353_02265at 484.548 kb on - strand, within AO353_02265at 484.548 kb on - strand, within AO353_02265at 484.619 kb on + strand, within AO353_02265at 484.619 kb on + strand, within AO353_02265at 484.721 kb on + strand, within AO353_02265at 484.846 kb on + strand, within AO353_02265at 484.846 kb on + strand, within AO353_02265at 484.846 kb on + strand, within AO353_02265at 484.847 kb on - strand, within AO353_02265at 484.847 kb on - strand, within AO353_02265at 484.847 kb on - strand, within AO353_02265at 484.901 kb on + strand, within AO353_02265at 484.901 kb on + strand, within AO353_02265at 484.901 kb on + strand, within AO353_02265at 484.901 kb on + strand, within AO353_02265at 484.902 kb on - strand, within AO353_02265at 484.902 kb on - strand, within AO353_02265at 484.988 kb on + strand, within AO353_02265at 484.988 kb on + strand, within AO353_02265at 484.988 kb on + strand, within AO353_02265at 484.988 kb on + strand, within AO353_02265at 484.988 kb on + strand, within AO353_02265at 484.989 kb on - strand, within AO353_02265at 484.989 kb on - strand, within AO353_02265at 484.989 kb on - strand, within AO353_02265at 484.989 kb on - strand, within AO353_02265at 484.989 kb on - strand, within AO353_02265at 484.989 kb on - strand, within AO353_02265at 484.989 kb on - strand, within AO353_02265at 484.989 kb on - strand, within AO353_02265at 484.989 kb on - strand, within AO353_02265at 484.989 kb on - strand, within AO353_02265at 484.989 kb on - strand, within AO353_02265at 484.989 kb on - strand, within AO353_02265at 484.989 kb on - strand, within AO353_02265at 485.189 kb on + strandat 485.189 kb on + strandat 485.189 kb on + strandat 485.189 kb on + strandat 485.190 kb on - strandat 485.190 kb on - strandat 485.190 kb on - strandat 485.198 kb on - strandat 485.238 kb on + strandat 485.238 kb on + strandat 485.238 kb on + strandat 485.238 kb on + strandat 485.238 kb on + strandat 485.238 kb on + strandat 485.239 kb on - strandat 485.239 kb on - strandat 485.239 kb on - strandat 485.318 kb on + strandat 485.319 kb on - strandat 485.492 kb on + strand, within AO353_02270at 485.492 kb on + strand, within AO353_02270at 485.492 kb on + strand, within AO353_02270at 485.542 kb on + strand, within AO353_02270at 485.595 kb on + strand, within AO353_02270at 485.595 kb on + strand, within AO353_02270at 485.595 kb on + strandat 485.596 kb on - strand, within AO353_02270at 485.596 kb on - strand, within AO353_02270at 485.596 kb on - strand, within AO353_02270at 485.596 kb on - strand, within AO353_02270at 485.596 kb on - strand, within AO353_02270at 485.596 kb on - strand, within AO353_02270at 485.596 kb on - strand, within AO353_02270at 485.596 kb on - strand, within AO353_02270at 485.596 kb on - strand, within AO353_02270at 485.803 kb on + strand, within AO353_02270at 485.804 kb on - strand, within AO353_02270at 485.804 kb on - strand, within AO353_02270at 486.052 kb on + strandat 486.341 kb on + strand, within AO353_02275at 486.341 kb on + strand, within AO353_02275at 486.341 kb on + strand, within AO353_02275at 486.341 kb on + strand, within AO353_02275at 486.341 kb on + strand, within AO353_02275at 486.341 kb on + strand, within AO353_02275at 486.342 kb on - strand, within AO353_02275at 486.342 kb on - strand, within AO353_02275at 486.342 kb on - strand, within AO353_02275at 486.342 kb on - strand, within AO353_02275at 486.342 kb on - strand, within AO353_02275at 486.342 kb on - strand, within AO353_02275at 486.906 kb on + strand, within AO353_02280at 486.906 kb on + strand, within AO353_02280at 486.906 kb on + strand, within AO353_02280at 486.906 kb on + strand, within AO353_02280

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction m-Inositol (C)
remove
484,509 - AO353_02265 0.29 -0.4
484,547 + AO353_02265 0.33 -1.2
484,548 - AO353_02265 0.33 -1.1
484,548 - AO353_02265 0.33 +3.1
484,548 - AO353_02265 0.33 +2.1
484,548 - AO353_02265 0.33 +0.8
484,619 + AO353_02265 0.41 -0.1
484,619 + AO353_02265 0.41 -1.5
484,721 + AO353_02265 0.52 -0.5
484,846 + AO353_02265 0.66 +0.3
484,846 + AO353_02265 0.66 -0.8
484,846 + AO353_02265 0.66 +0.7
484,847 - AO353_02265 0.66 -1.7
484,847 - AO353_02265 0.66 +1.8
484,847 - AO353_02265 0.66 -1.3
484,901 + AO353_02265 0.72 +0.4
484,901 + AO353_02265 0.72 -0.8
484,901 + AO353_02265 0.72 -0.2
484,901 + AO353_02265 0.72 +1.1
484,902 - AO353_02265 0.72 -0.5
484,902 - AO353_02265 0.72 +0.9
484,988 + AO353_02265 0.82 -0.9
484,988 + AO353_02265 0.82 +0.3
484,988 + AO353_02265 0.82 +0.5
484,988 + AO353_02265 0.82 -0.3
484,988 + AO353_02265 0.82 -1.9
484,989 - AO353_02265 0.82 -2.3
484,989 - AO353_02265 0.82 -0.2
484,989 - AO353_02265 0.82 -1.5
484,989 - AO353_02265 0.82 -0.4
484,989 - AO353_02265 0.82 +0.6
484,989 - AO353_02265 0.82 -0.5
484,989 - AO353_02265 0.82 -0.8
484,989 - AO353_02265 0.82 -0.1
484,989 - AO353_02265 0.82 +1.9
484,989 - AO353_02265 0.82 +0.9
484,989 - AO353_02265 0.82 +2.1
484,989 - AO353_02265 0.82 -1.5
484,989 - AO353_02265 0.82 +1.5
485,189 + -0.9
485,189 + -1.1
485,189 + +1.0
485,189 + +0.9
485,190 - -1.2
485,190 - +0.7
485,190 - -0.8
485,198 - -1.3
485,238 + -1.7
485,238 + -0.3
485,238 + -0.1
485,238 + -0.1
485,238 + -0.9
485,238 + -2.1
485,239 - +0.8
485,239 - -0.5
485,239 - -0.2
485,318 + +1.4
485,319 - -0.1
485,492 + AO353_02270 0.17 -1.5
485,492 + AO353_02270 0.17 -1.9
485,492 + AO353_02270 0.17 -0.5
485,542 + AO353_02270 0.25 -1.5
485,595 + AO353_02270 0.34 -2.1
485,595 + AO353_02270 0.34 +0.5
485,595 + +0.5
485,596 - AO353_02270 0.34 -2.1
485,596 - AO353_02270 0.34 -2.5
485,596 - AO353_02270 0.34 -0.8
485,596 - AO353_02270 0.34 -1.1
485,596 - AO353_02270 0.34 -1.7
485,596 - AO353_02270 0.34 -2.2
485,596 - AO353_02270 0.34 -2.1
485,596 - AO353_02270 0.34 -0.5
485,596 - AO353_02270 0.34 -1.7
485,803 + AO353_02270 0.69 -2.3
485,804 - AO353_02270 0.70 -1.5
485,804 - AO353_02270 0.70 -3.2
486,052 + +0.2
486,341 + AO353_02275 0.70 +0.2
486,341 + AO353_02275 0.70 +0.5
486,341 + AO353_02275 0.70 -0.4
486,341 + AO353_02275 0.70 +2.3
486,341 + AO353_02275 0.70 +0.2
486,341 + AO353_02275 0.70 -0.1
486,342 - AO353_02275 0.70 -0.7
486,342 - AO353_02275 0.70 -0.6
486,342 - AO353_02275 0.70 -1.7
486,342 - AO353_02275 0.70 -0.9
486,342 - AO353_02275 0.70 -0.5
486,342 - AO353_02275 0.70 -1.7
486,906 + AO353_02280 0.71 -0.6
486,906 + AO353_02280 0.71 +0.7
486,906 + AO353_02280 0.71 -1.6
486,906 + AO353_02280 0.71 +1.1

Or see this region's nucleotide sequence