Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_01960

Experiment: m-Inositol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_01955 and AO353_01960 are separated by 62 nucleotidesAO353_01960 and AO353_01965 are separated by 226 nucleotidesAO353_01965 and AO353_01970 are separated by 114 nucleotides AO353_01955: AO353_01955 - thiosulfate transporter subunit, at 413,705 to 414,703 _01955 AO353_01960: AO353_01960 - hypothetical protein, at 414,766 to 415,386 _01960 AO353_01965: AO353_01965 - competence protein ComEA, at 415,613 to 415,948 _01965 AO353_01970: AO353_01970 - hypothetical protein, at 416,063 to 418,057 _01970 Position (kb) 414 415 416Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 413.795 kb on + strandat 413.795 kb on + strandat 413.795 kb on + strandat 413.795 kb on + strandat 413.796 kb on - strandat 413.796 kb on - strandat 413.796 kb on - strandat 413.796 kb on - strandat 413.816 kb on + strand, within AO353_01955at 413.816 kb on + strand, within AO353_01955at 413.816 kb on + strand, within AO353_01955at 413.816 kb on + strand, within AO353_01955at 413.817 kb on - strand, within AO353_01955at 413.817 kb on - strand, within AO353_01955at 413.825 kb on + strand, within AO353_01955at 413.826 kb on - strand, within AO353_01955at 413.826 kb on - strand, within AO353_01955at 413.826 kb on - strand, within AO353_01955at 413.826 kb on - strand, within AO353_01955at 413.826 kb on - strand, within AO353_01955at 414.174 kb on - strand, within AO353_01955at 414.174 kb on - strand, within AO353_01955at 414.179 kb on + strand, within AO353_01955at 414.179 kb on + strand, within AO353_01955at 414.179 kb on + strand, within AO353_01955at 414.179 kb on + strand, within AO353_01955at 414.179 kb on + strand, within AO353_01955at 414.179 kb on + strand, within AO353_01955at 414.179 kb on + strand, within AO353_01955at 414.179 kb on + strand, within AO353_01955at 414.180 kb on - strand, within AO353_01955at 414.180 kb on - strand, within AO353_01955at 414.180 kb on - strand, within AO353_01955at 414.180 kb on - strand, within AO353_01955at 414.180 kb on - strand, within AO353_01955at 414.180 kb on - strand, within AO353_01955at 414.180 kb on - strand, within AO353_01955at 414.180 kb on - strand, within AO353_01955at 414.180 kb on - strand, within AO353_01955at 414.198 kb on - strand, within AO353_01955at 414.198 kb on - strand, within AO353_01955at 414.198 kb on - strand, within AO353_01955at 414.198 kb on - strand, within AO353_01955at 414.402 kb on - strand, within AO353_01955at 414.402 kb on - strand, within AO353_01955at 414.402 kb on - strand, within AO353_01955at 414.491 kb on + strand, within AO353_01955at 414.491 kb on + strand, within AO353_01955at 414.492 kb on - strand, within AO353_01955at 414.500 kb on + strand, within AO353_01955at 414.500 kb on + strand, within AO353_01955at 414.500 kb on + strand, within AO353_01955at 414.500 kb on + strand, within AO353_01955at 414.500 kb on + strand, within AO353_01955at 414.501 kb on - strand, within AO353_01955at 414.501 kb on - strand, within AO353_01955at 414.501 kb on - strand, within AO353_01955at 414.501 kb on - strand, within AO353_01955at 414.542 kb on + strand, within AO353_01955at 414.542 kb on + strand, within AO353_01955at 414.542 kb on + strand, within AO353_01955at 414.543 kb on - strand, within AO353_01955at 414.543 kb on - strand, within AO353_01955at 414.543 kb on - strand, within AO353_01955at 414.543 kb on - strand, within AO353_01955at 414.543 kb on - strandat 414.615 kb on + strandat 414.689 kb on + strandat 414.689 kb on + strandat 414.689 kb on + strandat 414.689 kb on + strandat 414.690 kb on - strandat 414.701 kb on + strandat 414.702 kb on - strandat 414.762 kb on + strandat 414.950 kb on + strand, within AO353_01960at 414.950 kb on + strand, within AO353_01960at 414.950 kb on + strand, within AO353_01960at 414.950 kb on + strand, within AO353_01960at 414.950 kb on + strand, within AO353_01960at 414.950 kb on + strand, within AO353_01960at 414.951 kb on - strand, within AO353_01960at 414.951 kb on - strand, within AO353_01960at 414.951 kb on - strand, within AO353_01960at 414.951 kb on - strand, within AO353_01960at 414.951 kb on - strand, within AO353_01960at 415.120 kb on + strand, within AO353_01960at 415.121 kb on - strand, within AO353_01960at 415.139 kb on + strand, within AO353_01960at 415.139 kb on + strand, within AO353_01960at 415.139 kb on + strand, within AO353_01960at 415.140 kb on - strand, within AO353_01960at 415.140 kb on - strand, within AO353_01960at 415.140 kb on - strand, within AO353_01960at 415.140 kb on - strand, within AO353_01960at 415.140 kb on - strand, within AO353_01960at 415.140 kb on - strand, within AO353_01960at 415.140 kb on - strand, within AO353_01960at 415.140 kb on - strand, within AO353_01960at 415.140 kb on - strand, within AO353_01960at 415.140 kb on - strand, within AO353_01960at 415.140 kb on - strand, within AO353_01960at 415.369 kb on + strandat 415.435 kb on + strandat 415.436 kb on - strandat 415.466 kb on + strandat 415.467 kb on - strandat 415.467 kb on - strandat 415.555 kb on + strandat 415.555 kb on + strandat 415.555 kb on + strandat 415.555 kb on + strandat 415.556 kb on - strandat 415.556 kb on - strandat 415.708 kb on + strand, within AO353_01965at 415.708 kb on + strand, within AO353_01965at 415.709 kb on - strand, within AO353_01965at 415.709 kb on - strand, within AO353_01965at 415.836 kb on - strand, within AO353_01965at 415.853 kb on + strand, within AO353_01965at 415.894 kb on + strand, within AO353_01965at 415.894 kb on + strand, within AO353_01965at 415.894 kb on + strand, within AO353_01965at 415.894 kb on + strand, within AO353_01965at 415.894 kb on + strand, within AO353_01965at 415.894 kb on + strand, within AO353_01965at 415.894 kb on + strand, within AO353_01965at 415.895 kb on - strand, within AO353_01965at 415.895 kb on - strand, within AO353_01965at 415.930 kb on - strandat 415.935 kb on + strandat 415.936 kb on - strandat 415.942 kb on + strandat 415.942 kb on + strandat 415.942 kb on + strandat 415.942 kb on + strandat 415.948 kb on + strandat 415.949 kb on - strandat 415.949 kb on - strandat 415.949 kb on - strandat 415.971 kb on + strandat 416.010 kb on + strandat 416.039 kb on + strandat 416.040 kb on - strandat 416.088 kb on + strandat 416.088 kb on + strandat 416.089 kb on - strandat 416.089 kb on - strandat 416.121 kb on + strandat 416.163 kb on + strandat 416.163 kb on + strandat 416.163 kb on + strandat 416.164 kb on - strandat 416.164 kb on - strandat 416.164 kb on - strandat 416.291 kb on + strand, within AO353_01970at 416.301 kb on + strand, within AO353_01970at 416.301 kb on + strand, within AO353_01970at 416.302 kb on - strand, within AO353_01970

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Per-strain Table

Position Strand Gene LocusTag Fraction m-Inositol (C)
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413,795 + -1.9
413,795 + +0.4
413,795 + -1.3
413,795 + +0.4
413,796 - +0.5
413,796 - +0.2
413,796 - +0.3
413,796 - +0.5
413,816 + AO353_01955 0.11 -0.0
413,816 + AO353_01955 0.11 -0.8
413,816 + AO353_01955 0.11 +3.1
413,816 + AO353_01955 0.11 -0.7
413,817 - AO353_01955 0.11 +0.2
413,817 - AO353_01955 0.11 +0.9
413,825 + AO353_01955 0.12 -0.8
413,826 - AO353_01955 0.12 +0.5
413,826 - AO353_01955 0.12 -0.5
413,826 - AO353_01955 0.12 -0.2
413,826 - AO353_01955 0.12 +0.1
413,826 - AO353_01955 0.12 -0.4
414,174 - AO353_01955 0.47 +0.4
414,174 - AO353_01955 0.47 +0.9
414,179 + AO353_01955 0.47 -0.4
414,179 + AO353_01955 0.47 -0.1
414,179 + AO353_01955 0.47 +0.5
414,179 + AO353_01955 0.47 +0.9
414,179 + AO353_01955 0.47 -0.5
414,179 + AO353_01955 0.47 -0.1
414,179 + AO353_01955 0.47 +1.5
414,179 + AO353_01955 0.47 -0.1
414,180 - AO353_01955 0.48 -1.6
414,180 - AO353_01955 0.48 +0.0
414,180 - AO353_01955 0.48 +0.1
414,180 - AO353_01955 0.48 -1.0
414,180 - AO353_01955 0.48 +1.2
414,180 - AO353_01955 0.48 -0.2
414,180 - AO353_01955 0.48 +0.1
414,180 - AO353_01955 0.48 -0.5
414,180 - AO353_01955 0.48 +0.2
414,198 - AO353_01955 0.49 +0.5
414,198 - AO353_01955 0.49 -0.3
414,198 - AO353_01955 0.49 -1.5
414,198 - AO353_01955 0.49 -0.3
414,402 - AO353_01955 0.70 +0.1
414,402 - AO353_01955 0.70 -0.2
414,402 - AO353_01955 0.70 +0.2
414,491 + AO353_01955 0.79 -2.9
414,491 + AO353_01955 0.79 -1.6
414,492 - AO353_01955 0.79 +0.6
414,500 + AO353_01955 0.80 -0.3
414,500 + AO353_01955 0.80 -0.1
414,500 + AO353_01955 0.80 -0.9
414,500 + AO353_01955 0.80 +1.3
414,500 + AO353_01955 0.80 +1.1
414,501 - AO353_01955 0.80 +0.0
414,501 - AO353_01955 0.80 +0.9
414,501 - AO353_01955 0.80 +0.7
414,501 - AO353_01955 0.80 +1.4
414,542 + AO353_01955 0.84 +1.0
414,542 + AO353_01955 0.84 -1.6
414,542 + AO353_01955 0.84 -1.5
414,543 - AO353_01955 0.84 +0.5
414,543 - AO353_01955 0.84 -1.0
414,543 - AO353_01955 0.84 +0.5
414,543 - AO353_01955 0.84 -1.2
414,543 - -0.1
414,615 + -0.1
414,689 + -1.3
414,689 + +1.1
414,689 + -0.8
414,689 + +1.5
414,690 - -1.3
414,701 + -0.7
414,702 - -0.1
414,762 + +1.5
414,950 + AO353_01960 0.30 +0.2
414,950 + AO353_01960 0.30 +0.9
414,950 + AO353_01960 0.30 +2.1
414,950 + AO353_01960 0.30 +0.8
414,950 + AO353_01960 0.30 +0.4
414,950 + AO353_01960 0.30 +0.7
414,951 - AO353_01960 0.30 -0.7
414,951 - AO353_01960 0.30 +1.4
414,951 - AO353_01960 0.30 +0.4
414,951 - AO353_01960 0.30 -0.3
414,951 - AO353_01960 0.30 +0.2
415,120 + AO353_01960 0.57 -0.5
415,121 - AO353_01960 0.57 -0.8
415,139 + AO353_01960 0.60 -0.3
415,139 + AO353_01960 0.60 -0.3
415,139 + AO353_01960 0.60 -0.2
415,140 - AO353_01960 0.60 +0.3
415,140 - AO353_01960 0.60 +0.5
415,140 - AO353_01960 0.60 +1.1
415,140 - AO353_01960 0.60 -0.0
415,140 - AO353_01960 0.60 -0.3
415,140 - AO353_01960 0.60 +0.0
415,140 - AO353_01960 0.60 +0.1
415,140 - AO353_01960 0.60 -0.9
415,140 - AO353_01960 0.60 +1.0
415,140 - AO353_01960 0.60 +0.5
415,140 - AO353_01960 0.60 +1.4
415,369 + -0.3
415,435 + -0.5
415,436 - +0.3
415,466 + -1.6
415,467 - +1.5
415,467 - -0.1
415,555 + +0.8
415,555 + -0.6
415,555 + -1.3
415,555 + -1.8
415,556 - +0.5
415,556 - -0.5
415,708 + AO353_01965 0.28 -0.8
415,708 + AO353_01965 0.28 +0.5
415,709 - AO353_01965 0.29 -0.5
415,709 - AO353_01965 0.29 -0.7
415,836 - AO353_01965 0.66 +0.7
415,853 + AO353_01965 0.71 +0.1
415,894 + AO353_01965 0.84 +1.1
415,894 + AO353_01965 0.84 -0.3
415,894 + AO353_01965 0.84 -0.0
415,894 + AO353_01965 0.84 +0.5
415,894 + AO353_01965 0.84 +0.1
415,894 + AO353_01965 0.84 -0.3
415,894 + AO353_01965 0.84 +0.3
415,895 - AO353_01965 0.84 -1.6
415,895 - AO353_01965 0.84 +1.9
415,930 - +0.9
415,935 + -0.6
415,936 - -0.8
415,942 + +0.1
415,942 + +0.1
415,942 + -0.6
415,942 + +0.4
415,948 + -0.3
415,949 - -0.1
415,949 - -0.5
415,949 - -1.3
415,971 + +0.5
416,010 + -0.9
416,039 + +1.8
416,040 - +0.7
416,088 + -0.5
416,088 + -1.3
416,089 - -0.2
416,089 - -0.8
416,121 + +0.5
416,163 + -0.5
416,163 + -0.8
416,163 + -0.2
416,164 - +0.2
416,164 - -2.5
416,164 - -0.5
416,291 + AO353_01970 0.11 +1.3
416,301 + AO353_01970 0.12 -0.6
416,301 + AO353_01970 0.12 -0.5
416,302 - AO353_01970 0.12 -0.8

Or see this region's nucleotide sequence