Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_01375

Experiment: m-Inositol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_01370 and AO353_01375 are separated by 126 nucleotidesAO353_01375 and AO353_01380 are separated by 33 nucleotidesAO353_01380 and AO353_01385 are separated by 13 nucleotidesAO353_01385 and AO353_01390 are separated by 105 nucleotides AO353_01370: AO353_01370 - malonyl CoA-ACP transacylase, at 294,782 to 295,720 _01370 AO353_01375: AO353_01375 - phosphate acyltransferase, at 295,847 to 296,827 _01375 AO353_01380: AO353_01380 - 50S ribosomal protein L32, at 296,861 to 297,043 _01380 AO353_01385: AO353_01385 - metal-binding protein, at 297,057 to 297,584 _01385 AO353_01390: AO353_01390 - septum formation inhibitor Maf, at 297,690 to 298,268 _01390 Position (kb) 295 296 297Strain fitness (log2 ratio) -3 -2 -1 0 1at 295.767 kb on - strandat 295.802 kb on - strandat 295.802 kb on - strandat 295.824 kb on + strandat 295.824 kb on + strandat 295.824 kb on + strandat 295.824 kb on + strandat 295.825 kb on - strandat 295.825 kb on - strandat 295.825 kb on - strandat 295.825 kb on - strandat 295.825 kb on - strandat 295.825 kb on - strandat 295.849 kb on - strandat 295.943 kb on + strandat 295.943 kb on + strandat 295.943 kb on + strandat 295.943 kb on + strandat 295.944 kb on - strandat 295.944 kb on - strandat 295.944 kb on - strandat 295.966 kb on + strand, within AO353_01375at 295.966 kb on + strand, within AO353_01375at 295.967 kb on - strand, within AO353_01375at 296.005 kb on + strand, within AO353_01375at 296.005 kb on + strand, within AO353_01375at 296.005 kb on + strand, within AO353_01375at 296.006 kb on - strandat 296.006 kb on - strand, within AO353_01375at 296.034 kb on - strand, within AO353_01375at 296.034 kb on - strand, within AO353_01375at 296.202 kb on + strand, within AO353_01375at 296.203 kb on - strand, within AO353_01375at 296.232 kb on + strand, within AO353_01375at 296.232 kb on + strand, within AO353_01375at 296.232 kb on + strand, within AO353_01375at 296.233 kb on - strand, within AO353_01375at 296.233 kb on - strand, within AO353_01375at 296.233 kb on - strand, within AO353_01375at 296.233 kb on - strand, within AO353_01375at 296.233 kb on - strand, within AO353_01375at 296.233 kb on - strand, within AO353_01375at 296.508 kb on + strand, within AO353_01375at 296.508 kb on + strand, within AO353_01375at 296.509 kb on - strand, within AO353_01375at 296.509 kb on - strand, within AO353_01375at 296.724 kb on - strand, within AO353_01375at 296.768 kb on - strandat 297.689 kb on + strandat 297.690 kb on - strandat 297.690 kb on - strandat 297.690 kb on - strandat 297.690 kb on - strandat 297.700 kb on + strandat 297.700 kb on + strandat 297.700 kb on + strandat 297.701 kb on - strandat 297.703 kb on + strandat 297.703 kb on + strandat 297.703 kb on + strandat 297.703 kb on + strandat 297.703 kb on + strandat 297.704 kb on - strandat 297.704 kb on - strandat 297.704 kb on - strandat 297.704 kb on - strandat 297.704 kb on - strandat 297.704 kb on - strandat 297.704 kb on - strandat 297.704 kb on - strandat 297.704 kb on - strandat 297.704 kb on - strandat 297.704 kb on - strandat 297.736 kb on + strandat 297.737 kb on - strandat 297.737 kb on - strandat 297.737 kb on - strandat 297.761 kb on + strand, within AO353_01390at 297.762 kb on - strand, within AO353_01390at 297.762 kb on - strand, within AO353_01390at 297.824 kb on - strand, within AO353_01390at 297.824 kb on - strand, within AO353_01390at 297.824 kb on - strand, within AO353_01390

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Per-strain Table

Position Strand Gene LocusTag Fraction m-Inositol (C)
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295,767 - -0.8
295,802 - -1.5
295,802 - +0.1
295,824 + -2.3
295,824 + +0.2
295,824 + -1.1
295,824 + -1.8
295,825 - +0.1
295,825 - -0.1
295,825 - +0.3
295,825 - +0.7
295,825 - +1.0
295,825 - -0.2
295,849 - +1.2
295,943 + -0.9
295,943 + +0.5
295,943 + -1.1
295,943 + +0.5
295,944 - -0.2
295,944 - -0.1
295,944 - +0.5
295,966 + AO353_01375 0.12 -2.9
295,966 + AO353_01375 0.12 -0.7
295,967 - AO353_01375 0.12 -1.8
296,005 + AO353_01375 0.16 -1.8
296,005 + AO353_01375 0.16 -0.1
296,005 + AO353_01375 0.16 -1.5
296,006 - +0.9
296,006 - AO353_01375 0.16 -1.8
296,034 - AO353_01375 0.19 -1.2
296,034 - AO353_01375 0.19 -1.8
296,202 + AO353_01375 0.36 -1.1
296,203 - AO353_01375 0.36 -1.3
296,232 + AO353_01375 0.39 -1.7
296,232 + AO353_01375 0.39 -1.5
296,232 + AO353_01375 0.39 -1.8
296,233 - AO353_01375 0.39 -1.5
296,233 - AO353_01375 0.39 -0.6
296,233 - AO353_01375 0.39 -1.1
296,233 - AO353_01375 0.39 -0.8
296,233 - AO353_01375 0.39 -2.0
296,233 - AO353_01375 0.39 -2.4
296,508 + AO353_01375 0.67 -2.2
296,508 + AO353_01375 0.67 -1.8
296,509 - AO353_01375 0.67 +0.5
296,509 - AO353_01375 0.67 -0.8
296,724 - AO353_01375 0.89 -0.1
296,768 - -1.1
297,689 + -0.5
297,690 - +1.0
297,690 - +0.6
297,690 - -1.5
297,690 - +1.1
297,700 + -0.1
297,700 + +0.7
297,700 + -2.0
297,701 - +0.7
297,703 + -0.7
297,703 + -1.2
297,703 + +0.3
297,703 + +1.5
297,703 + +0.7
297,704 - -1.2
297,704 - -0.1
297,704 - -3.6
297,704 - -1.0
297,704 - -0.4
297,704 - -0.4
297,704 - -2.3
297,704 - -2.3
297,704 - -1.3
297,704 - -0.1
297,704 - +1.1
297,736 + -0.3
297,737 - +0.7
297,737 - +0.9
297,737 - -0.1
297,761 + AO353_01390 0.12 -2.2
297,762 - AO353_01390 0.12 -2.1
297,762 - AO353_01390 0.12 -1.5
297,824 - AO353_01390 0.23 -0.8
297,824 - AO353_01390 0.23 +0.4
297,824 - AO353_01390 0.23 +0.2

Or see this region's nucleotide sequence