Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_00825

Experiment: m-Inositol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_00815 and AO353_00820 are separated by 10 nucleotidesAO353_00820 and AO353_00825 are separated by 105 nucleotidesAO353_00825 and AO353_00830 are separated by 107 nucleotidesAO353_00830 and AO353_00835 are separated by 114 nucleotides AO353_00815: AO353_00815 - Nitrate reductase (EC 1.7.99.4) (from data), at 185,539 to 188,256 _00815 AO353_00820: AO353_00820 - uroporphyrin-III methyltransferase, at 188,267 to 189,040 _00820 AO353_00825: AO353_00825 - porin, at 189,146 to 190,120 _00825 AO353_00830: AO353_00830 - RNA polymerase subunit sigma, at 190,228 to 190,794 _00830 AO353_00835: AO353_00835 - transporter, at 190,909 to 191,733 _00835 Position (kb) 189 190 191Strain fitness (log2 ratio) -2 -1 0 1 2at 188.261 kb on + strandat 188.261 kb on + strandat 188.261 kb on + strandat 188.261 kb on + strandat 188.261 kb on + strandat 188.262 kb on - strandat 188.335 kb on - strandat 188.358 kb on + strand, within AO353_00820at 188.358 kb on + strand, within AO353_00820at 188.358 kb on + strand, within AO353_00820at 188.358 kb on + strand, within AO353_00820at 188.358 kb on + strand, within AO353_00820at 188.358 kb on + strand, within AO353_00820at 188.358 kb on + strand, within AO353_00820at 188.358 kb on + strand, within AO353_00820at 188.358 kb on + strand, within AO353_00820at 188.358 kb on + strand, within AO353_00820at 188.359 kb on - strand, within AO353_00820at 188.359 kb on - strand, within AO353_00820at 188.359 kb on - strand, within AO353_00820at 188.359 kb on - strand, within AO353_00820at 188.489 kb on + strand, within AO353_00820at 188.647 kb on + strand, within AO353_00820at 188.647 kb on + strand, within AO353_00820at 188.648 kb on - strand, within AO353_00820at 188.682 kb on + strand, within AO353_00820at 188.722 kb on + strand, within AO353_00820at 188.722 kb on + strand, within AO353_00820at 188.723 kb on - strand, within AO353_00820at 188.765 kb on + strand, within AO353_00820at 188.765 kb on + strand, within AO353_00820at 188.765 kb on + strand, within AO353_00820at 188.765 kb on + strand, within AO353_00820at 188.765 kb on + strand, within AO353_00820at 188.765 kb on + strand, within AO353_00820at 188.766 kb on - strand, within AO353_00820at 188.766 kb on - strand, within AO353_00820at 188.766 kb on - strand, within AO353_00820at 188.766 kb on - strand, within AO353_00820at 188.766 kb on - strand, within AO353_00820at 189.007 kb on + strandat 189.008 kb on - strandat 189.008 kb on - strandat 189.038 kb on + strandat 189.038 kb on + strandat 189.038 kb on + strandat 189.038 kb on + strandat 189.038 kb on + strandat 189.039 kb on - strandat 189.039 kb on - strandat 189.039 kb on - strandat 189.039 kb on - strandat 189.039 kb on - strandat 189.039 kb on - strandat 189.088 kb on - strandat 189.135 kb on + strandat 189.144 kb on - strandat 189.144 kb on - strandat 189.147 kb on + strandat 189.148 kb on - strandat 189.148 kb on - strandat 189.148 kb on - strandat 189.177 kb on - strandat 189.334 kb on - strand, within AO353_00825at 189.371 kb on + strand, within AO353_00825at 189.637 kb on - strand, within AO353_00825at 189.681 kb on + strand, within AO353_00825at 189.682 kb on - strand, within AO353_00825at 189.682 kb on - strand, within AO353_00825at 189.682 kb on - strand, within AO353_00825at 189.790 kb on - strand, within AO353_00825at 189.910 kb on - strand, within AO353_00825at 189.946 kb on - strand, within AO353_00825at 190.147 kb on - strandat 190.209 kb on - strandat 190.230 kb on - strandat 190.230 kb on - strandat 190.395 kb on - strand, within AO353_00830at 190.575 kb on + strand, within AO353_00830at 190.674 kb on + strand, within AO353_00830at 190.888 kb on - strandat 190.888 kb on - strandat 190.888 kb on - strandat 190.888 kb on - strandat 190.888 kb on - strandat 190.888 kb on - strandat 190.888 kb on - strandat 190.888 kb on - strandat 190.888 kb on - strandat 190.888 kb on - strandat 190.893 kb on - strandat 190.893 kb on - strandat 190.921 kb on - strandat 190.986 kb on + strandat 191.057 kb on + strand, within AO353_00835at 191.058 kb on - strand, within AO353_00835at 191.058 kb on - strand, within AO353_00835at 191.058 kb on - strand, within AO353_00835at 191.058 kb on - strand, within AO353_00835at 191.073 kb on - strand, within AO353_00835at 191.073 kb on - strand, within AO353_00835at 191.073 kb on - strand, within AO353_00835at 191.073 kb on - strand, within AO353_00835

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Per-strain Table

Position Strand Gene LocusTag Fraction m-Inositol (C)
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188,261 + -1.9
188,261 + -0.5
188,261 + -0.9
188,261 + +0.1
188,261 + +0.1
188,262 - -1.3
188,335 - +0.6
188,358 + AO353_00820 0.12 -0.5
188,358 + AO353_00820 0.12 +0.1
188,358 + AO353_00820 0.12 +0.9
188,358 + AO353_00820 0.12 -1.4
188,358 + AO353_00820 0.12 -0.4
188,358 + AO353_00820 0.12 -1.5
188,358 + AO353_00820 0.12 +0.9
188,358 + AO353_00820 0.12 -0.3
188,358 + AO353_00820 0.12 +0.1
188,358 + AO353_00820 0.12 -0.5
188,359 - AO353_00820 0.12 -0.7
188,359 - AO353_00820 0.12 -0.6
188,359 - AO353_00820 0.12 +1.0
188,359 - AO353_00820 0.12 -0.7
188,489 + AO353_00820 0.29 +1.0
188,647 + AO353_00820 0.49 -0.1
188,647 + AO353_00820 0.49 +2.1
188,648 - AO353_00820 0.49 -0.1
188,682 + AO353_00820 0.54 -1.5
188,722 + AO353_00820 0.59 -0.9
188,722 + AO353_00820 0.59 -1.2
188,723 - AO353_00820 0.59 -0.5
188,765 + AO353_00820 0.64 -0.7
188,765 + AO353_00820 0.64 -0.3
188,765 + AO353_00820 0.64 -0.5
188,765 + AO353_00820 0.64 -1.3
188,765 + AO353_00820 0.64 +1.5
188,765 + AO353_00820 0.64 +1.1
188,766 - AO353_00820 0.64 +0.8
188,766 - AO353_00820 0.64 -1.3
188,766 - AO353_00820 0.64 +0.9
188,766 - AO353_00820 0.64 +0.1
188,766 - AO353_00820 0.64 +0.9
189,007 + -1.2
189,008 - +1.1
189,008 - +0.5
189,038 + +0.5
189,038 + -1.1
189,038 + -1.6
189,038 + -1.7
189,038 + +0.0
189,039 - -2.0
189,039 - -0.9
189,039 - -2.0
189,039 - -0.1
189,039 - +1.1
189,039 - -1.3
189,088 - -0.1
189,135 + -1.1
189,144 - -1.1
189,144 - +0.5
189,147 + -1.1
189,148 - +0.7
189,148 - +1.5
189,148 - -0.9
189,177 - -1.9
189,334 - AO353_00825 0.19 +0.8
189,371 + AO353_00825 0.23 -0.5
189,637 - AO353_00825 0.50 +0.2
189,681 + AO353_00825 0.55 -1.1
189,682 - AO353_00825 0.55 -0.1
189,682 - AO353_00825 0.55 -0.1
189,682 - AO353_00825 0.55 -1.2
189,790 - AO353_00825 0.66 -0.5
189,910 - AO353_00825 0.78 -1.1
189,946 - AO353_00825 0.82 -0.5
190,147 - +0.1
190,209 - -0.1
190,230 - -1.1
190,230 - -0.7
190,395 - AO353_00830 0.29 +1.5
190,575 + AO353_00830 0.61 +0.5
190,674 + AO353_00830 0.79 -0.5
190,888 - -0.9
190,888 - -2.0
190,888 - +0.5
190,888 - -0.9
190,888 - +0.6
190,888 - -0.1
190,888 - +0.5
190,888 - -1.0
190,888 - -1.3
190,888 - -0.5
190,893 - +1.5
190,893 - +1.0
190,921 - +1.0
190,986 + -1.1
191,057 + AO353_00835 0.18 -0.5
191,058 - AO353_00835 0.18 -0.3
191,058 - AO353_00835 0.18 -0.5
191,058 - AO353_00835 0.18 -0.6
191,058 - AO353_00835 0.18 -0.9
191,073 - AO353_00835 0.20 +0.5
191,073 - AO353_00835 0.20 +1.2
191,073 - AO353_00835 0.20 -0.2
191,073 - AO353_00835 0.20 +0.0

Or see this region's nucleotide sequence