Strain Fitness in Shewanella sp. ANA-3 around Shewana3_4004

Experiment: L-Isoleucine (N)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	L-Isoleucine (N)
4,806,452	+				+0.0
4,806,452	+				+0.3
4,806,452	+				-1.7
4,806,460	-				-4.4
4,806,460	-				-1.8
4,806,460	-				-0.5
4,806,505	+				+1.1
4,806,618	-				-0.0
4,806,618	-				-4.0
4,806,625	-				-4.6
4,807,230	+				+0.4
4,807,230	+				-2.7
4,807,453	-				-1.9
4,807,457	+				+0.6
4,807,464	+				+0.3
4,807,466	-				+0.7
4,807,466	-				-0.1
4,807,478	-				+0.2
4,807,548	-				-1.9
4,807,549	-		Shewana3_4004	0.10	+0.6
4,807,552	+		Shewana3_4004	0.10	-3.5
4,807,573	-		Shewana3_4004	0.11	-2.5
4,807,627	-		Shewana3_4004	0.14	-1.1
4,807,745	-		Shewana3_4004	0.21	+1.0
4,807,786	+		Shewana3_4004	0.24	-0.8
4,807,831	+		Shewana3_4004	0.26	+1.3
4,807,846	-		Shewana3_4004	0.27	+0.9
4,807,863	+		Shewana3_4004	0.28	-2.7
4,807,871	-		Shewana3_4004	0.28	+0.7
4,807,871	-		Shewana3_4004	0.28	+0.2
4,807,871	-		Shewana3_4004	0.28	+1.8
4,807,987	-		Shewana3_4004	0.35	+0.4
4,807,987	-		Shewana3_4004	0.35	+0.1
4,807,987	-		Shewana3_4004	0.35	+1.2
4,808,077	-		Shewana3_4004	0.40	-0.9
4,808,103	+		Shewana3_4004	0.42	-1.6
4,808,111	-		Shewana3_4004	0.42	-0.9
4,808,119	+		Shewana3_4004	0.43	+0.5
4,808,179	-		Shewana3_4004	0.46	+0.8
4,808,269	+		Shewana3_4004	0.51	+0.2
4,808,269	+		Shewana3_4004	0.51	+0.8
4,808,341	-		Shewana3_4004	0.55	-1.8
4,808,352	-		Shewana3_4004	0.56	-0.3
4,808,374	+		Shewana3_4004	0.57	-1.2
4,808,407	+		Shewana3_4004	0.59	-1.5
4,808,407	+		Shewana3_4004	0.59	+1.6
4,808,432	+		Shewana3_4004	0.60	+1.3
4,808,472	+		Shewana3_4004	0.63	+1.1
4,808,509	+		Shewana3_4004	0.65	+0.8
4,808,698	-		Shewana3_4004	0.76	+0.7
4,808,749	-		Shewana3_4004	0.79	-0.5
4,808,860	-		Shewana3_4004	0.85	+0.5
4,808,860	-		Shewana3_4004	0.85	+0.8
4,808,878	-		Shewana3_4004	0.86	-0.6
4,808,994	+				-0.7
4,809,010	+				+0.6
4,809,010	+				+0.2
4,809,010	+				-1.7
4,809,010	+				+0.6
4,809,010	+				-0.6
4,809,010	+				+0.8
4,809,010	+				+1.8
4,809,010	+				+0.8
4,809,010	+				-0.9
4,809,010	+				+0.5
4,809,010	+				-0.9
4,809,010	+				-0.0
4,809,018	-				+0.7
4,809,018	-				-1.0
4,809,018	-				+0.6
4,809,018	-				-0.2
4,809,018	-				-0.6
4,809,018	-				-0.9
4,809,018	-				-1.2
4,809,018	-				-0.6
4,809,018	-				+0.3
4,809,018	-				+0.6
4,809,018	-				-1.1
4,809,018	-				-1.2
4,809,018	-				+1.4
4,809,018	-				+0.9
4,809,018	-				+0.9
4,809,018	-				+1.3
4,809,018	-				+0.3
4,809,020	+				-2.4
4,809,020	+				+2.3
4,809,023	-				+0.8
4,809,023	-				+0.8
4,809,041	-				+0.7
4,809,052	+				-1.3
4,809,052	+				+0.5
4,809,052	+				-1.5
4,809,061	-				+0.4
4,809,061	-				-0.5
4,809,063	+				-1.5
4,809,063	+				-1.4
4,809,070	+				-1.7
4,809,070	+				+0.5
4,809,070	+				-1.5
4,809,071	-				-2.3
4,809,075	+				-1.3
4,809,078	-				+0.6
4,809,078	-				+1.6
4,809,086	-				+0.3
4,809,097	-				+0.2
4,809,097	-				-3.3
4,809,110	+				+0.5
4,809,110	+				+0.9
4,809,118	-				-3.0
4,809,119	+				-1.6
4,809,122	+				+0.6
4,809,130	-				+1.0
4,809,143	-				+0.3
4,809,199	+				+0.7
4,809,225	+				-3.0
4,809,225	+				+0.9
4,809,225	+				+0.6
4,809,225	+				+0.7
4,809,225	+				+0.4
4,809,233	-				-0.1
4,809,233	-				-1.3
4,809,233	-				+0.5
4,809,233	-				+0.7
4,809,233	-				+0.5
4,809,233	-				-1.9
4,809,235	-				+1.2
4,809,244	-				+0.1
4,809,249	+				+0.6
4,809,283	-				+0.1
4,809,291	-		Shewana3_4005	0.10	-1.4
4,809,291	-		Shewana3_4005	0.10	+0.3
4,809,297	-		Shewana3_4005	0.11	-1.1
4,809,297	-		Shewana3_4005	0.11	+0.4
4,809,302	-		Shewana3_4005	0.12	+0.5
4,809,304	+		Shewana3_4005	0.12	+0.3
4,809,324	-		Shewana3_4005	0.15	+0.6
4,809,357	-		Shewana3_4005	0.19	+0.5
4,809,358	-		Shewana3_4005	0.19	-1.5
4,809,359	-		Shewana3_4005	0.19	-0.3
4,809,384	+		Shewana3_4005	0.22	-0.3
4,809,384	+		Shewana3_4005	0.22	+0.7
4,809,384	+		Shewana3_4005	0.22	-2.1
4,809,384	+		Shewana3_4005	0.22	-2.8
4,809,384	+		Shewana3_4005	0.22	-1.5
4,809,384	+		Shewana3_4005	0.22	+0.5
4,809,384	+		Shewana3_4005	0.22	+0.7
4,809,392	-		Shewana3_4005	0.24	-1.5
4,809,392	-		Shewana3_4005	0.24	-1.4
4,809,392	-		Shewana3_4005	0.24	+1.7
4,809,392	-		Shewana3_4005	0.24	-0.9
4,809,392	-		Shewana3_4005	0.24	+2.0
4,809,392	-		Shewana3_4005	0.24	-2.3
4,809,392	-		Shewana3_4005	0.24	+0.1
4,809,392	-		Shewana3_4005	0.24	-1.6
4,809,392	-		Shewana3_4005	0.24	-1.6
4,809,398	+		Shewana3_4005	0.24	-1.5
4,809,398	+		Shewana3_4005	0.24	+0.5
4,809,407	-		Shewana3_4005	0.25	+0.5
4,809,416	-		Shewana3_4005	0.27	-1.0
4,809,426	-		Shewana3_4005	0.28	+0.4
4,809,430	+		Shewana3_4005	0.28	+0.4
4,809,430	+		Shewana3_4005	0.28	-0.7
4,809,430	+		Shewana3_4005	0.28	+0.5
4,809,430	+		Shewana3_4005	0.28	-2.3
4,809,437	+		Shewana3_4005	0.29	+0.9
4,809,438	-		Shewana3_4005	0.30	+0.5
4,809,438	-		Shewana3_4005	0.30	+0.4
4,809,438	-		Shewana3_4005	0.30	-1.3
4,809,438	-		Shewana3_4005	0.30	-2.0
4,809,438	-		Shewana3_4005	0.30	+0.1
4,809,438	-		Shewana3_4005	0.30	+0.9
4,809,438	-		Shewana3_4005	0.30	-1.9
4,809,438	-		Shewana3_4005	0.30	+0.1
4,809,453	-		Shewana3_4005	0.32	-1.2
4,809,460	-		Shewana3_4005	0.32	+1.7
4,809,475	-		Shewana3_4005	0.34	+0.6
4,809,477	-		Shewana3_4005	0.35	-1.7
4,809,530	+		Shewana3_4005	0.42	+0.9
4,809,530	+		Shewana3_4005	0.42	+0.4
4,809,537	-		Shewana3_4005	0.42	-0.5
4,809,537	-		Shewana3_4005	0.42	+0.2
4,809,538	-		Shewana3_4005	0.43	+0.9
4,809,538	-		Shewana3_4005	0.43	+1.2
4,809,539	-		Shewana3_4005	0.43	-2.0
4,809,586	+		Shewana3_4005	0.49	-1.4
4,809,586	+		Shewana3_4005	0.49	+2.0
4,809,594	-		Shewana3_4005	0.50	-1.3
4,809,594	-		Shewana3_4005	0.50	-0.0
4,809,597	+		Shewana3_4005	0.50	+0.9
4,809,619	+		Shewana3_4005	0.53	-3.5
4,809,627	-		Shewana3_4005	0.54	-1.3
4,809,628	-		Shewana3_4005	0.54	+0.6
4,809,628	-		Shewana3_4005	0.54	-1.6
4,809,649	-		Shewana3_4005	0.57	+1.4
4,809,740	+				-0.2
4,809,745	+		Shewana3_4005	0.70	+0.7
4,809,745	+		Shewana3_4005	0.70	+0.4
4,809,745	+		Shewana3_4005	0.70	-1.9
4,809,745	+		Shewana3_4005	0.70	-0.8
4,809,753	-		Shewana3_4005	0.71	+1.1
4,809,788	-		Shewana3_4005	0.75	+1.7
4,809,809	+		Shewana3_4005	0.78	-1.5
4,809,838	+		Shewana3_4005	0.82	-0.9
4,809,838	+		Shewana3_4005	0.82	+0.5
4,809,838	+		Shewana3_4005	0.82	-1.2
4,809,840	+		Shewana3_4005	0.82	-0.6
4,809,844	+		Shewana3_4005	0.83	-0.5
4,809,845	+		Shewana3_4005	0.83	+0.1
4,809,846	-		Shewana3_4005	0.83	+0.3
4,809,853	+		Shewana3_4005	0.84	+0.9
4,809,853	-		Shewana3_4005	0.84	-1.3
4,809,853	-		Shewana3_4005	0.84	+0.8
4,809,858	+		Shewana3_4005	0.84	+0.8
4,809,858	+		Shewana3_4005	0.84	+1.8
4,809,858	+		Shewana3_4005	0.84	+0.6
4,809,858	+		Shewana3_4005	0.84	+0.9
4,809,867	+		Shewana3_4005	0.86	+0.7
4,809,867	+		Shewana3_4005	0.86	-1.0
4,809,904	-				+0.2
4,809,905	-				-0.3
4,809,905	-				-0.4
4,809,924	-				-0.7
4,809,925	-				-0.0
4,809,929	+				-0.8
4,809,934	+				+0.4
4,809,934	+				+0.6
4,809,939	+				+1.0
4,809,939	+				-2.3
4,809,939	+				+1.3
4,809,939	+				+1.0
4,809,939	+				-0.8
4,809,942	-				+0.8
4,809,947	-				+0.5
4,809,947	-				-0.4
4,809,958	+				-2.6
4,809,965	-				+0.5
4,809,971	+				+0.4
4,809,974	+				+0.7
4,809,989	+				-1.9
4,809,991	-				-1.1
4,809,997	-				-2.7
4,810,002	+				+0.4
4,810,017	-				-0.5
4,810,038	-				-0.0
4,810,084	+				-0.8
4,810,115	+				+0.5