Experiment: L-Isoleucine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_3683 and Shewana3_3684 are separated by 168 nucleotides Shewana3_3684 and Shewana3_3685 are separated by 117 nucleotides
Shewana3_3683: Shewana3_3683 - hypothetical protein (RefSeq), at 4,422,269 to 4,422,748
_3683
Shewana3_3684: Shewana3_3684 - MscS mechanosensitive ion channel (RefSeq), at 4,422,917 to 4,423,753
_3684
Shewana3_3685: Shewana3_3685 - Sel1 domain-containing protein (RefSeq), at 4,423,871 to 4,425,409
_3685
Position (kb)
4422
4423
4424 Strain fitness (log2 ratio)
-2
-1
0
1 at 4421.983 kb on + strand at 4422.027 kb on + strand at 4422.118 kb on - strand at 4422.132 kb on + strand at 4422.140 kb on - strand at 4422.169 kb on + strand at 4422.169 kb on + strand at 4422.169 kb on + strand at 4422.202 kb on + strand at 4422.213 kb on + strand at 4422.219 kb on - strand at 4422.296 kb on + strand at 4422.302 kb on + strand at 4422.310 kb on - strand at 4422.310 kb on - strand at 4422.419 kb on + strand, within Shewana3_3683 at 4422.427 kb on - strand, within Shewana3_3683 at 4422.622 kb on - strand, within Shewana3_3683 at 4422.850 kb on + strand at 4423.455 kb on + strand, within Shewana3_3684 at 4423.524 kb on + strand, within Shewana3_3684 at 4423.689 kb on + strand at 4423.765 kb on - strand at 4423.858 kb on - strand at 4424.038 kb on - strand, within Shewana3_3685 at 4424.038 kb on - strand, within Shewana3_3685 at 4424.040 kb on + strand, within Shewana3_3685 at 4424.469 kb on + strand, within Shewana3_3685 at 4424.546 kb on + strand, within Shewana3_3685 at 4424.554 kb on - strand, within Shewana3_3685 at 4424.564 kb on - strand, within Shewana3_3685 at 4424.590 kb on - strand, within Shewana3_3685 at 4424.746 kb on + strand, within Shewana3_3685 at 4424.746 kb on + strand, within Shewana3_3685 at 4424.746 kb on + strand, within Shewana3_3685 at 4424.746 kb on + strand, within Shewana3_3685
Per-strain Table
Position Strand Gene LocusTag Fraction L-Isoleucine (N) remove 4,421,983 + +1.2 4,422,027 + -1.6 4,422,118 - +0.5 4,422,132 + -1.2 4,422,140 - -1.5 4,422,169 + -1.4 4,422,169 + -0.8 4,422,169 + +0.5 4,422,202 + +0.5 4,422,213 + +0.2 4,422,219 - -2.2 4,422,296 + +0.6 4,422,302 + +0.4 4,422,310 - +0.4 4,422,310 - +0.6 4,422,419 + Shewana3_3683 0.31 +0.5 4,422,427 - Shewana3_3683 0.33 -1.3 4,422,622 - Shewana3_3683 0.74 -1.8 4,422,850 + -1.4 4,423,455 + Shewana3_3684 0.64 +0.7 4,423,524 + Shewana3_3684 0.73 +0.6 4,423,689 + +0.9 4,423,765 - -0.0 4,423,858 - +1.2 4,424,038 - Shewana3_3685 0.11 -0.5 4,424,038 - Shewana3_3685 0.11 -0.9 4,424,040 + Shewana3_3685 0.11 +0.6 4,424,469 + Shewana3_3685 0.39 +0.3 4,424,546 + Shewana3_3685 0.44 -1.8 4,424,554 - Shewana3_3685 0.44 -2.0 4,424,564 - Shewana3_3685 0.45 -1.9 4,424,590 - Shewana3_3685 0.47 +0.3 4,424,746 + Shewana3_3685 0.57 +0.9 4,424,746 + Shewana3_3685 0.57 +0.2 4,424,746 + Shewana3_3685 0.57 +0.1 4,424,746 + Shewana3_3685 0.57 +0.4
Or see this region's nucleotide sequence