Strain Fitness in Shewanella sp. ANA-3 around Shewana3_3636

Experiment: L-Isoleucine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_3635 and Shewana3_3636 are separated by 145 nucleotidesShewana3_3636 and Shewana3_3637 are separated by 168 nucleotides Shewana3_3635: Shewana3_3635 - hypothetical protein (RefSeq), at 4,366,444 to 4,366,983 _3635 Shewana3_3636: Shewana3_3636 - hypothetical protein (RefSeq), at 4,367,129 to 4,367,530 _3636 Shewana3_3637: Shewana3_3637 - hypothetical protein (RefSeq), at 4,367,699 to 4,368,850 _3637 Position (kb) 4367 4368Strain fitness (log2 ratio) -2 -1 0 1at 4366.217 kb on - strandat 4366.355 kb on - strandat 4366.361 kb on - strandat 4366.361 kb on - strandat 4366.499 kb on - strand, within Shewana3_3635at 4366.560 kb on + strand, within Shewana3_3635at 4366.615 kb on + strand, within Shewana3_3635at 4366.726 kb on - strand, within Shewana3_3635at 4366.765 kb on - strand, within Shewana3_3635at 4366.914 kb on - strand, within Shewana3_3635at 4366.914 kb on - strand, within Shewana3_3635at 4366.961 kb on - strandat 4366.964 kb on + strandat 4367.254 kb on - strand, within Shewana3_3636at 4367.270 kb on - strand, within Shewana3_3636at 4367.272 kb on + strand, within Shewana3_3636at 4367.283 kb on + strand, within Shewana3_3636at 4367.464 kb on + strand, within Shewana3_3636at 4367.789 kb on - strandat 4367.817 kb on - strand, within Shewana3_3637at 4367.958 kb on - strand, within Shewana3_3637at 4368.018 kb on - strand, within Shewana3_3637at 4368.186 kb on + strand, within Shewana3_3637at 4368.281 kb on - strand, within Shewana3_3637at 4368.294 kb on + strand, within Shewana3_3637at 4368.321 kb on - strand, within Shewana3_3637at 4368.499 kb on + strand, within Shewana3_3637

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Isoleucine (N)
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4,366,217 - -1.9
4,366,355 - -1.7
4,366,361 - +0.3
4,366,361 - -0.0
4,366,499 - Shewana3_3635 0.10 -0.3
4,366,560 + Shewana3_3635 0.21 +0.2
4,366,615 + Shewana3_3635 0.32 -2.3
4,366,726 - Shewana3_3635 0.52 -0.2
4,366,765 - Shewana3_3635 0.59 +0.7
4,366,914 - Shewana3_3635 0.87 -0.5
4,366,914 - Shewana3_3635 0.87 -2.4
4,366,961 - -1.7
4,366,964 + -1.5
4,367,254 - Shewana3_3636 0.31 -0.1
4,367,270 - Shewana3_3636 0.35 -1.2
4,367,272 + Shewana3_3636 0.36 -1.7
4,367,283 + Shewana3_3636 0.38 -1.1
4,367,464 + Shewana3_3636 0.83 -1.3
4,367,789 - -1.7
4,367,817 - Shewana3_3637 0.10 +0.6
4,367,958 - Shewana3_3637 0.22 -1.6
4,368,018 - Shewana3_3637 0.28 +0.3
4,368,186 + Shewana3_3637 0.42 -0.3
4,368,281 - Shewana3_3637 0.51 +0.3
4,368,294 + Shewana3_3637 0.52 +1.2
4,368,321 - Shewana3_3637 0.54 +0.2
4,368,499 + Shewana3_3637 0.69 -1.3

Or see this region's nucleotide sequence