Experiment: L-Isoleucine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_3631 and Shewana3_3632 are separated by 175 nucleotides Shewana3_3632 and Shewana3_3633 are separated by 28 nucleotides Shewana3_3633 and Shewana3_3634 are separated by 53 nucleotides
Shewana3_3631: Shewana3_3631 - microcin-processing peptidase 1 (RefSeq), at 4,359,965 to 4,361,308
_3631
Shewana3_3632: Shewana3_3632 - hypothetical protein (RefSeq), at 4,361,484 to 4,362,017
_3632
Shewana3_3633: Shewana3_3633 - Ig domain-containing protein (RefSeq), at 4,362,046 to 4,364,535
_3633
Shewana3_3634: Shewana3_3634 - amino acid permease-associated region (RefSeq), at 4,364,589 to 4,365,920
_3634
Position (kb)
4362
4363
4364
4365 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 4361.418 kb on + strand at 4361.546 kb on - strand, within Shewana3_3632 at 4361.681 kb on - strand, within Shewana3_3632 at 4361.767 kb on - strand, within Shewana3_3632 at 4361.861 kb on - strand, within Shewana3_3632 at 4361.868 kb on + strand, within Shewana3_3632 at 4361.913 kb on - strand, within Shewana3_3632 at 4362.183 kb on + strand at 4362.291 kb on + strand at 4362.541 kb on + strand, within Shewana3_3633 at 4362.541 kb on + strand, within Shewana3_3633 at 4362.549 kb on - strand, within Shewana3_3633 at 4362.695 kb on + strand, within Shewana3_3633 at 4362.722 kb on + strand, within Shewana3_3633 at 4362.764 kb on - strand, within Shewana3_3633 at 4362.822 kb on + strand, within Shewana3_3633 at 4363.175 kb on + strand, within Shewana3_3633 at 4363.298 kb on - strand, within Shewana3_3633 at 4363.325 kb on + strand, within Shewana3_3633 at 4363.438 kb on + strand, within Shewana3_3633 at 4363.479 kb on + strand, within Shewana3_3633 at 4363.497 kb on - strand, within Shewana3_3633 at 4363.847 kb on - strand, within Shewana3_3633 at 4364.160 kb on - strand, within Shewana3_3633 at 4364.212 kb on + strand, within Shewana3_3633 at 4364.316 kb on - strand at 4364.343 kb on + strand at 4364.683 kb on - strand at 4364.690 kb on + strand at 4364.826 kb on + strand, within Shewana3_3634 at 4364.898 kb on - strand, within Shewana3_3634 at 4365.035 kb on + strand, within Shewana3_3634 at 4365.043 kb on - strand, within Shewana3_3634 at 4365.071 kb on + strand, within Shewana3_3634 at 4365.291 kb on + strand, within Shewana3_3634 at 4365.350 kb on + strand, within Shewana3_3634 at 4365.350 kb on + strand, within Shewana3_3634 at 4365.489 kb on + strand, within Shewana3_3634 at 4365.512 kb on - strand, within Shewana3_3634
Per-strain Table
Position Strand Gene LocusTag Fraction L-Isoleucine (N) remove 4,361,418 + -0.7 4,361,546 - Shewana3_3632 0.12 +0.7 4,361,681 - Shewana3_3632 0.37 +1.2 4,361,767 - Shewana3_3632 0.53 -0.4 4,361,861 - Shewana3_3632 0.71 +1.1 4,361,868 + Shewana3_3632 0.72 +0.5 4,361,913 - Shewana3_3632 0.80 -0.7 4,362,183 + +0.6 4,362,291 + +0.9 4,362,541 + Shewana3_3633 0.20 +0.2 4,362,541 + Shewana3_3633 0.20 +0.3 4,362,549 - Shewana3_3633 0.20 +0.0 4,362,695 + Shewana3_3633 0.26 +0.9 4,362,722 + Shewana3_3633 0.27 -2.8 4,362,764 - Shewana3_3633 0.29 -1.8 4,362,822 + Shewana3_3633 0.31 +0.8 4,363,175 + Shewana3_3633 0.45 +1.2 4,363,298 - Shewana3_3633 0.50 +0.3 4,363,325 + Shewana3_3633 0.51 +0.6 4,363,438 + Shewana3_3633 0.56 +0.7 4,363,479 + Shewana3_3633 0.58 +0.2 4,363,497 - Shewana3_3633 0.58 +0.5 4,363,847 - Shewana3_3633 0.72 +0.0 4,364,160 - Shewana3_3633 0.85 +0.4 4,364,212 + Shewana3_3633 0.87 -3.5 4,364,316 - +0.2 4,364,343 + -1.7 4,364,683 - +0.1 4,364,690 + -2.4 4,364,826 + Shewana3_3634 0.18 +0.5 4,364,898 - Shewana3_3634 0.23 +1.6 4,365,035 + Shewana3_3634 0.33 +0.5 4,365,043 - Shewana3_3634 0.34 +0.7 4,365,071 + Shewana3_3634 0.36 +2.1 4,365,291 + Shewana3_3634 0.53 +1.2 4,365,350 + Shewana3_3634 0.57 -1.3 4,365,350 + Shewana3_3634 0.57 -1.1 4,365,489 + Shewana3_3634 0.68 +0.8 4,365,512 - Shewana3_3634 0.69 -0.4
Or see this region's nucleotide sequence