Strain Fitness in Shewanella sp. ANA-3 around Shewana3_3633

Experiment: L-Isoleucine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_3631 and Shewana3_3632 are separated by 175 nucleotidesShewana3_3632 and Shewana3_3633 are separated by 28 nucleotidesShewana3_3633 and Shewana3_3634 are separated by 53 nucleotides Shewana3_3631: Shewana3_3631 - microcin-processing peptidase 1 (RefSeq), at 4,359,965 to 4,361,308 _3631 Shewana3_3632: Shewana3_3632 - hypothetical protein (RefSeq), at 4,361,484 to 4,362,017 _3632 Shewana3_3633: Shewana3_3633 - Ig domain-containing protein (RefSeq), at 4,362,046 to 4,364,535 _3633 Shewana3_3634: Shewana3_3634 - amino acid permease-associated region (RefSeq), at 4,364,589 to 4,365,920 _3634 Position (kb) 4362 4363 4364 4365Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 4361.418 kb on + strandat 4361.546 kb on - strand, within Shewana3_3632at 4361.681 kb on - strand, within Shewana3_3632at 4361.767 kb on - strand, within Shewana3_3632at 4361.861 kb on - strand, within Shewana3_3632at 4361.868 kb on + strand, within Shewana3_3632at 4361.913 kb on - strand, within Shewana3_3632at 4362.183 kb on + strandat 4362.291 kb on + strandat 4362.541 kb on + strand, within Shewana3_3633at 4362.541 kb on + strand, within Shewana3_3633at 4362.549 kb on - strand, within Shewana3_3633at 4362.695 kb on + strand, within Shewana3_3633at 4362.722 kb on + strand, within Shewana3_3633at 4362.764 kb on - strand, within Shewana3_3633at 4362.822 kb on + strand, within Shewana3_3633at 4363.175 kb on + strand, within Shewana3_3633at 4363.298 kb on - strand, within Shewana3_3633at 4363.325 kb on + strand, within Shewana3_3633at 4363.438 kb on + strand, within Shewana3_3633at 4363.479 kb on + strand, within Shewana3_3633at 4363.497 kb on - strand, within Shewana3_3633at 4363.847 kb on - strand, within Shewana3_3633at 4364.160 kb on - strand, within Shewana3_3633at 4364.212 kb on + strand, within Shewana3_3633at 4364.316 kb on - strandat 4364.343 kb on + strandat 4364.683 kb on - strandat 4364.690 kb on + strandat 4364.826 kb on + strand, within Shewana3_3634at 4364.898 kb on - strand, within Shewana3_3634at 4365.035 kb on + strand, within Shewana3_3634at 4365.043 kb on - strand, within Shewana3_3634at 4365.071 kb on + strand, within Shewana3_3634at 4365.291 kb on + strand, within Shewana3_3634at 4365.350 kb on + strand, within Shewana3_3634at 4365.350 kb on + strand, within Shewana3_3634at 4365.489 kb on + strand, within Shewana3_3634at 4365.512 kb on - strand, within Shewana3_3634

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Isoleucine (N)
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4,361,418 + -0.7
4,361,546 - Shewana3_3632 0.12 +0.7
4,361,681 - Shewana3_3632 0.37 +1.2
4,361,767 - Shewana3_3632 0.53 -0.4
4,361,861 - Shewana3_3632 0.71 +1.1
4,361,868 + Shewana3_3632 0.72 +0.5
4,361,913 - Shewana3_3632 0.80 -0.7
4,362,183 + +0.6
4,362,291 + +0.9
4,362,541 + Shewana3_3633 0.20 +0.2
4,362,541 + Shewana3_3633 0.20 +0.3
4,362,549 - Shewana3_3633 0.20 +0.0
4,362,695 + Shewana3_3633 0.26 +0.9
4,362,722 + Shewana3_3633 0.27 -2.8
4,362,764 - Shewana3_3633 0.29 -1.8
4,362,822 + Shewana3_3633 0.31 +0.8
4,363,175 + Shewana3_3633 0.45 +1.2
4,363,298 - Shewana3_3633 0.50 +0.3
4,363,325 + Shewana3_3633 0.51 +0.6
4,363,438 + Shewana3_3633 0.56 +0.7
4,363,479 + Shewana3_3633 0.58 +0.2
4,363,497 - Shewana3_3633 0.58 +0.5
4,363,847 - Shewana3_3633 0.72 +0.0
4,364,160 - Shewana3_3633 0.85 +0.4
4,364,212 + Shewana3_3633 0.87 -3.5
4,364,316 - +0.2
4,364,343 + -1.7
4,364,683 - +0.1
4,364,690 + -2.4
4,364,826 + Shewana3_3634 0.18 +0.5
4,364,898 - Shewana3_3634 0.23 +1.6
4,365,035 + Shewana3_3634 0.33 +0.5
4,365,043 - Shewana3_3634 0.34 +0.7
4,365,071 + Shewana3_3634 0.36 +2.1
4,365,291 + Shewana3_3634 0.53 +1.2
4,365,350 + Shewana3_3634 0.57 -1.3
4,365,350 + Shewana3_3634 0.57 -1.1
4,365,489 + Shewana3_3634 0.68 +0.8
4,365,512 - Shewana3_3634 0.69 -0.4

Or see this region's nucleotide sequence