Experiment: L-Isoleucine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_3606 and Shewana3_3607 are separated by 10 nucleotides Shewana3_3607 and Shewana3_3608 are separated by 189 nucleotides
Shewana3_3606: Shewana3_3606 - cytochrome c family protein (RefSeq), at 4,330,531 to 4,331,589
_3606
Shewana3_3607: Shewana3_3607 - cytochrome c family protein (RefSeq), at 4,331,600 to 4,332,226
_3607
Shewana3_3608: Shewana3_3608 - response regulator receiver protein (RefSeq), at 4,332,416 to 4,333,444
_3608
Position (kb) 4331
4332
4333 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 4330.606 kb on - strand at 4330.657 kb on - strand, within Shewana3_3606 at 4330.657 kb on - strand, within Shewana3_3606 at 4330.733 kb on - strand, within Shewana3_3606 at 4330.783 kb on - strand, within Shewana3_3606 at 4330.786 kb on + strand, within Shewana3_3606 at 4330.803 kb on + strand, within Shewana3_3606 at 4330.811 kb on - strand, within Shewana3_3606 at 4330.812 kb on - strand, within Shewana3_3606 at 4330.861 kb on + strand, within Shewana3_3606 at 4330.861 kb on + strand, within Shewana3_3606 at 4330.869 kb on - strand, within Shewana3_3606 at 4330.894 kb on - strand, within Shewana3_3606 at 4330.903 kb on + strand, within Shewana3_3606 at 4330.918 kb on - strand, within Shewana3_3606 at 4330.997 kb on - strand, within Shewana3_3606 at 4331.011 kb on - strand, within Shewana3_3606 at 4331.056 kb on - strand, within Shewana3_3606 at 4331.087 kb on + strand, within Shewana3_3606 at 4331.092 kb on - strand, within Shewana3_3606 at 4331.129 kb on - strand, within Shewana3_3606 at 4331.129 kb on - strand, within Shewana3_3606 at 4331.129 kb on - strand, within Shewana3_3606 at 4331.164 kb on - strand, within Shewana3_3606 at 4331.165 kb on - strand, within Shewana3_3606 at 4331.165 kb on - strand, within Shewana3_3606 at 4331.211 kb on + strand, within Shewana3_3606 at 4331.219 kb on - strand, within Shewana3_3606 at 4331.338 kb on + strand, within Shewana3_3606 at 4331.346 kb on - strand, within Shewana3_3606 at 4331.492 kb on - strand at 4331.689 kb on - strand, within Shewana3_3607 at 4331.818 kb on - strand, within Shewana3_3607 at 4331.828 kb on - strand, within Shewana3_3607 at 4331.907 kb on + strand, within Shewana3_3607 at 4332.035 kb on + strand, within Shewana3_3607 at 4332.164 kb on + strand at 4332.164 kb on + strand at 4332.172 kb on - strand at 4332.172 kb on - strand at 4332.291 kb on - strand at 4332.381 kb on - strand at 4332.455 kb on + strand at 4332.599 kb on + strand, within Shewana3_3608 at 4332.604 kb on + strand, within Shewana3_3608 at 4332.632 kb on + strand, within Shewana3_3608 at 4332.651 kb on + strand, within Shewana3_3608 at 4332.691 kb on - strand, within Shewana3_3608 at 4332.696 kb on - strand, within Shewana3_3608 at 4332.798 kb on + strand, within Shewana3_3608 at 4332.801 kb on - strand, within Shewana3_3608
Per-strain Table
Position Strand Gene LocusTag Fraction L-Isoleucine (N) remove 4,330,606 - +1.0 4,330,657 - Shewana3_3606 0.12 +0.5 4,330,657 - Shewana3_3606 0.12 +0.9 4,330,733 - Shewana3_3606 0.19 +0.4 4,330,783 - Shewana3_3606 0.24 +0.8 4,330,786 + Shewana3_3606 0.24 +0.2 4,330,803 + Shewana3_3606 0.26 +1.8 4,330,811 - Shewana3_3606 0.26 +1.4 4,330,812 - Shewana3_3606 0.27 +0.1 4,330,861 + Shewana3_3606 0.31 -1.4 4,330,861 + Shewana3_3606 0.31 +0.7 4,330,869 - Shewana3_3606 0.32 -0.3 4,330,894 - Shewana3_3606 0.34 -0.4 4,330,903 + Shewana3_3606 0.35 -0.6 4,330,918 - Shewana3_3606 0.37 +0.6 4,330,997 - Shewana3_3606 0.44 -2.3 4,331,011 - Shewana3_3606 0.45 +0.4 4,331,056 - Shewana3_3606 0.50 -1.9 4,331,087 + Shewana3_3606 0.53 -1.4 4,331,092 - Shewana3_3606 0.53 +0.9 4,331,129 - Shewana3_3606 0.56 -0.1 4,331,129 - Shewana3_3606 0.56 +0.5 4,331,129 - Shewana3_3606 0.56 +0.1 4,331,164 - Shewana3_3606 0.60 -0.3 4,331,165 - Shewana3_3606 0.60 +0.3 4,331,165 - Shewana3_3606 0.60 +0.3 4,331,211 + Shewana3_3606 0.64 -2.2 4,331,219 - Shewana3_3606 0.65 +0.4 4,331,338 + Shewana3_3606 0.76 +0.6 4,331,346 - Shewana3_3606 0.77 +0.4 4,331,492 - +0.4 4,331,689 - Shewana3_3607 0.14 +0.8 4,331,818 - Shewana3_3607 0.35 -2.2 4,331,828 - Shewana3_3607 0.36 -2.4 4,331,907 + Shewana3_3607 0.49 -0.9 4,332,035 + Shewana3_3607 0.69 +0.3 4,332,164 + +0.2 4,332,164 + -2.5 4,332,172 - -2.8 4,332,172 - +1.3 4,332,291 - +0.4 4,332,381 - -0.0 4,332,455 + -2.0 4,332,599 + Shewana3_3608 0.18 -1.1 4,332,604 + Shewana3_3608 0.18 +0.5 4,332,632 + Shewana3_3608 0.21 -0.9 4,332,651 + Shewana3_3608 0.23 +1.0 4,332,691 - Shewana3_3608 0.27 -1.3 4,332,696 - Shewana3_3608 0.27 +0.6 4,332,798 + Shewana3_3608 0.37 -3.1 4,332,801 - Shewana3_3608 0.37 -0.9
Or see this region's nucleotide sequence