Strain Fitness in Shewanella sp. ANA-3 around Shewana3_3578

Experiment: L-Isoleucine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_3577 and Shewana3_3578 are separated by 327 nucleotidesShewana3_3578 and Shewana3_3579 are separated by 125 nucleotides Shewana3_3577: Shewana3_3577 - sodium/hydrogen exchanger (RefSeq), at 4,291,309 to 4,292,952 _3577 Shewana3_3578: Shewana3_3578 - galactokinase (RefSeq), at 4,293,280 to 4,294,425 _3578 Shewana3_3579: Shewana3_3579 - Aldose 1-epimerase (EC 5.1.3.3) (from data), at 4,294,551 to 4,295,582 _3579 Position (kb) 4293 4294 4295Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 4292.312 kb on + strand, within Shewana3_3577at 4292.407 kb on + strand, within Shewana3_3577at 4292.434 kb on - strand, within Shewana3_3577at 4292.496 kb on - strand, within Shewana3_3577at 4292.599 kb on - strand, within Shewana3_3577at 4292.806 kb on + strandat 4292.809 kb on - strandat 4292.809 kb on - strandat 4292.914 kb on - strandat 4292.979 kb on - strandat 4293.004 kb on + strandat 4293.290 kb on - strandat 4293.616 kb on + strand, within Shewana3_3578at 4293.616 kb on + strand, within Shewana3_3578at 4293.616 kb on + strand, within Shewana3_3578at 4293.624 kb on - strand, within Shewana3_3578at 4293.624 kb on - strand, within Shewana3_3578at 4293.663 kb on + strand, within Shewana3_3578at 4293.715 kb on + strand, within Shewana3_3578at 4293.731 kb on + strand, within Shewana3_3578at 4293.805 kb on - strand, within Shewana3_3578at 4293.832 kb on + strand, within Shewana3_3578at 4293.885 kb on - strand, within Shewana3_3578at 4294.636 kb on + strandat 4294.636 kb on + strandat 4294.816 kb on + strand, within Shewana3_3579at 4294.914 kb on + strand, within Shewana3_3579at 4294.945 kb on + strand, within Shewana3_3579at 4294.981 kb on - strand, within Shewana3_3579at 4295.056 kb on - strand, within Shewana3_3579at 4295.143 kb on + strand, within Shewana3_3579at 4295.175 kb on - strand, within Shewana3_3579at 4295.291 kb on + strand, within Shewana3_3579at 4295.351 kb on + strand, within Shewana3_3579

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Isoleucine (N)
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4,292,312 + Shewana3_3577 0.61 -1.1
4,292,407 + Shewana3_3577 0.67 -0.4
4,292,434 - Shewana3_3577 0.68 -1.0
4,292,496 - Shewana3_3577 0.72 +0.8
4,292,599 - Shewana3_3577 0.78 -0.8
4,292,806 + -0.8
4,292,809 - -2.9
4,292,809 - -0.9
4,292,914 - -1.5
4,292,979 - -1.1
4,293,004 + -0.4
4,293,290 - -1.4
4,293,616 + Shewana3_3578 0.29 +1.3
4,293,616 + Shewana3_3578 0.29 +1.5
4,293,616 + Shewana3_3578 0.29 +1.4
4,293,624 - Shewana3_3578 0.30 +1.8
4,293,624 - Shewana3_3578 0.30 -1.2
4,293,663 + Shewana3_3578 0.33 +1.6
4,293,715 + Shewana3_3578 0.38 +0.1
4,293,731 + Shewana3_3578 0.39 +1.4
4,293,805 - Shewana3_3578 0.46 +0.3
4,293,832 + Shewana3_3578 0.48 -0.8
4,293,885 - Shewana3_3578 0.53 -0.3
4,294,636 + +1.0
4,294,636 + +0.7
4,294,816 + Shewana3_3579 0.26 -1.2
4,294,914 + Shewana3_3579 0.35 +0.8
4,294,945 + Shewana3_3579 0.38 +0.5
4,294,981 - Shewana3_3579 0.42 +0.8
4,295,056 - Shewana3_3579 0.49 -1.9
4,295,143 + Shewana3_3579 0.57 +0.2
4,295,175 - Shewana3_3579 0.60 -2.2
4,295,291 + Shewana3_3579 0.72 -1.3
4,295,351 + Shewana3_3579 0.78 +0.1

Or see this region's nucleotide sequence