Experiment: L-Isoleucine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_3577 and Shewana3_3578 are separated by 327 nucleotides Shewana3_3578 and Shewana3_3579 are separated by 125 nucleotides
Shewana3_3577: Shewana3_3577 - sodium/hydrogen exchanger (RefSeq), at 4,291,309 to 4,292,952
_3577
Shewana3_3578: Shewana3_3578 - galactokinase (RefSeq), at 4,293,280 to 4,294,425
_3578
Shewana3_3579: Shewana3_3579 - Aldose 1-epimerase (EC 5.1.3.3) (from data) , at 4,294,551 to 4,295,582
_3579
Position (kb)
4293
4294
4295 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 4292.312 kb on + strand, within Shewana3_3577 at 4292.407 kb on + strand, within Shewana3_3577 at 4292.434 kb on - strand, within Shewana3_3577 at 4292.496 kb on - strand, within Shewana3_3577 at 4292.599 kb on - strand, within Shewana3_3577 at 4292.806 kb on + strand at 4292.809 kb on - strand at 4292.809 kb on - strand at 4292.914 kb on - strand at 4292.979 kb on - strand at 4293.004 kb on + strand at 4293.290 kb on - strand at 4293.616 kb on + strand, within Shewana3_3578 at 4293.616 kb on + strand, within Shewana3_3578 at 4293.616 kb on + strand, within Shewana3_3578 at 4293.624 kb on - strand, within Shewana3_3578 at 4293.624 kb on - strand, within Shewana3_3578 at 4293.663 kb on + strand, within Shewana3_3578 at 4293.715 kb on + strand, within Shewana3_3578 at 4293.731 kb on + strand, within Shewana3_3578 at 4293.805 kb on - strand, within Shewana3_3578 at 4293.832 kb on + strand, within Shewana3_3578 at 4293.885 kb on - strand, within Shewana3_3578 at 4294.636 kb on + strand at 4294.636 kb on + strand at 4294.816 kb on + strand, within Shewana3_3579 at 4294.914 kb on + strand, within Shewana3_3579 at 4294.945 kb on + strand, within Shewana3_3579 at 4294.981 kb on - strand, within Shewana3_3579 at 4295.056 kb on - strand, within Shewana3_3579 at 4295.143 kb on + strand, within Shewana3_3579 at 4295.175 kb on - strand, within Shewana3_3579 at 4295.291 kb on + strand, within Shewana3_3579 at 4295.351 kb on + strand, within Shewana3_3579
Per-strain Table
Position Strand Gene LocusTag Fraction L-Isoleucine (N) remove 4,292,312 + Shewana3_3577 0.61 -1.1 4,292,407 + Shewana3_3577 0.67 -0.4 4,292,434 - Shewana3_3577 0.68 -1.0 4,292,496 - Shewana3_3577 0.72 +0.8 4,292,599 - Shewana3_3577 0.78 -0.8 4,292,806 + -0.8 4,292,809 - -2.9 4,292,809 - -0.9 4,292,914 - -1.5 4,292,979 - -1.1 4,293,004 + -0.4 4,293,290 - -1.4 4,293,616 + Shewana3_3578 0.29 +1.3 4,293,616 + Shewana3_3578 0.29 +1.5 4,293,616 + Shewana3_3578 0.29 +1.4 4,293,624 - Shewana3_3578 0.30 +1.8 4,293,624 - Shewana3_3578 0.30 -1.2 4,293,663 + Shewana3_3578 0.33 +1.6 4,293,715 + Shewana3_3578 0.38 +0.1 4,293,731 + Shewana3_3578 0.39 +1.4 4,293,805 - Shewana3_3578 0.46 +0.3 4,293,832 + Shewana3_3578 0.48 -0.8 4,293,885 - Shewana3_3578 0.53 -0.3 4,294,636 + +1.0 4,294,636 + +0.7 4,294,816 + Shewana3_3579 0.26 -1.2 4,294,914 + Shewana3_3579 0.35 +0.8 4,294,945 + Shewana3_3579 0.38 +0.5 4,294,981 - Shewana3_3579 0.42 +0.8 4,295,056 - Shewana3_3579 0.49 -1.9 4,295,143 + Shewana3_3579 0.57 +0.2 4,295,175 - Shewana3_3579 0.60 -2.2 4,295,291 + Shewana3_3579 0.72 -1.3 4,295,351 + Shewana3_3579 0.78 +0.1
Or see this region's nucleotide sequence