Experiment: L-Isoleucine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_3346 and Shewana3_3347 overlap by 8 nucleotides Shewana3_3347 and Shewana3_3348 are separated by 166 nucleotides Shewana3_3348 and Shewana3_3349 are separated by 240 nucleotides
Shewana3_3346: Shewana3_3346 - hypothetical protein (RefSeq), at 4,014,861 to 4,015,409
_3346
Shewana3_3347: Shewana3_3347 - transcriptional regulator (RefSeq), at 4,015,402 to 4,016,151
_3347
Shewana3_3348: Shewana3_3348 - Na+/H+ antiporter (RefSeq), at 4,016,318 to 4,017,787
_3348
Shewana3_3349: Shewana3_3349 - hypothetical protein (RefSeq), at 4,018,028 to 4,018,765
_3349
Position (kb)
4016
4017
4018 Strain fitness (log2 ratio)
-1
0
1 at 4015.327 kb on - strand, within Shewana3_3346 at 4015.589 kb on + strand, within Shewana3_3347 at 4015.601 kb on + strand, within Shewana3_3347 at 4015.756 kb on - strand, within Shewana3_3347 at 4015.999 kb on + strand, within Shewana3_3347 at 4016.007 kb on - strand, within Shewana3_3347 at 4016.426 kb on + strand at 4016.534 kb on + strand, within Shewana3_3348 at 4016.670 kb on - strand, within Shewana3_3348 at 4016.685 kb on + strand, within Shewana3_3348 at 4016.716 kb on - strand, within Shewana3_3348 at 4016.749 kb on + strand, within Shewana3_3348 at 4016.844 kb on + strand, within Shewana3_3348 at 4017.240 kb on - strand, within Shewana3_3348 at 4017.278 kb on + strand, within Shewana3_3348 at 4017.278 kb on + strand, within Shewana3_3348 at 4017.327 kb on + strand, within Shewana3_3348 at 4017.761 kb on - strand at 4017.808 kb on - strand at 4018.035 kb on + strand at 4018.035 kb on + strand at 4018.282 kb on + strand, within Shewana3_3349 at 4018.282 kb on + strand, within Shewana3_3349 at 4018.309 kb on - strand, within Shewana3_3349 at 4018.731 kb on + strand at 4018.731 kb on + strand at 4018.733 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Isoleucine (N) remove 4,015,327 - Shewana3_3346 0.85 -0.7 4,015,589 + Shewana3_3347 0.25 -1.4 4,015,601 + Shewana3_3347 0.27 -0.4 4,015,756 - Shewana3_3347 0.47 +0.5 4,015,999 + Shewana3_3347 0.80 +0.4 4,016,007 - Shewana3_3347 0.81 +0.3 4,016,426 + +0.4 4,016,534 + Shewana3_3348 0.15 +1.3 4,016,670 - Shewana3_3348 0.24 +1.3 4,016,685 + Shewana3_3348 0.25 -0.7 4,016,716 - Shewana3_3348 0.27 +0.3 4,016,749 + Shewana3_3348 0.29 +0.4 4,016,844 + Shewana3_3348 0.36 +0.5 4,017,240 - Shewana3_3348 0.63 -1.5 4,017,278 + Shewana3_3348 0.65 +0.1 4,017,278 + Shewana3_3348 0.65 +1.0 4,017,327 + Shewana3_3348 0.69 +0.1 4,017,761 - +0.2 4,017,808 - +0.1 4,018,035 + +0.2 4,018,035 + +0.4 4,018,282 + Shewana3_3349 0.34 +0.8 4,018,282 + Shewana3_3349 0.34 -1.7 4,018,309 - Shewana3_3349 0.38 +0.4 4,018,731 + +0.2 4,018,731 + -0.7 4,018,733 + +0.8
Or see this region's nucleotide sequence