Strain Fitness in Shewanella sp. ANA-3 around Shewana3_3265

Experiment: L-Isoleucine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_3264 and Shewana3_3265 are separated by 154 nucleotidesShewana3_3265 and Shewana3_3266 are separated by 256 nucleotides Shewana3_3264: Shewana3_3264 - hypothetical protein (RefSeq), at 3,906,464 to 3,907,510 _3264 Shewana3_3265: Shewana3_3265 - hypothetical protein (RefSeq), at 3,907,665 to 3,908,021 _3265 Shewana3_3266: Shewana3_3266 - hypothetical protein (RefSeq), at 3,908,278 to 3,908,571 _3266 Position (kb) 3907 3908 3909Strain fitness (log2 ratio) -3 -2 -1 0 1at 3906.691 kb on + strand, within Shewana3_3264at 3907.030 kb on - strand, within Shewana3_3264at 3907.123 kb on - strand, within Shewana3_3264at 3907.125 kb on + strand, within Shewana3_3264at 3907.552 kb on + strandat 3907.689 kb on + strandat 3907.695 kb on + strandat 3907.728 kb on - strand, within Shewana3_3265at 3907.792 kb on + strand, within Shewana3_3265at 3907.933 kb on - strand, within Shewana3_3265at 3907.948 kb on + strand, within Shewana3_3265at 3908.006 kb on - strandat 3908.087 kb on + strandat 3908.087 kb on + strandat 3908.171 kb on + strandat 3908.381 kb on - strand, within Shewana3_3266at 3908.391 kb on - strand, within Shewana3_3266at 3908.391 kb on - strand, within Shewana3_3266at 3908.498 kb on + strand, within Shewana3_3266at 3908.608 kb on - strandat 3908.652 kb on - strandat 3908.655 kb on + strandat 3908.722 kb on - strandat 3908.850 kb on - strandat 3908.893 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Isoleucine (N)
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3,906,691 + Shewana3_3264 0.22 -2.9
3,907,030 - Shewana3_3264 0.54 +0.2
3,907,123 - Shewana3_3264 0.63 +0.7
3,907,125 + Shewana3_3264 0.63 -1.5
3,907,552 + -0.4
3,907,689 + -1.9
3,907,695 + +1.1
3,907,728 - Shewana3_3265 0.18 -1.6
3,907,792 + Shewana3_3265 0.36 +0.6
3,907,933 - Shewana3_3265 0.75 -0.3
3,907,948 + Shewana3_3265 0.79 -0.6
3,908,006 - -2.7
3,908,087 + -0.1
3,908,087 + +0.6
3,908,171 + -1.1
3,908,381 - Shewana3_3266 0.35 +0.7
3,908,391 - Shewana3_3266 0.38 +0.6
3,908,391 - Shewana3_3266 0.38 +0.1
3,908,498 + Shewana3_3266 0.75 -1.0
3,908,608 - +0.9
3,908,652 - -1.7
3,908,655 + +0.4
3,908,722 - +0.5
3,908,850 - +0.4
3,908,893 - +0.3

Or see this region's nucleotide sequence