Strain Fitness in Shewanella sp. ANA-3 around Shewana3_3231

Experiment: L-Isoleucine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_3230 and Shewana3_3231 are separated by 236 nucleotidesShewana3_3231 and Shewana3_3232 are separated by 102 nucleotides Shewana3_3230: Shewana3_3230 - methionine aminopeptidase, type I (RefSeq), at 3,873,280 to 3,874,062 _3230 Shewana3_3231: Shewana3_3231 - AMP-dependent synthetase and ligase (RefSeq), at 3,874,299 to 3,875,903 _3231 Shewana3_3232: Shewana3_3232 - lipid ABC transporter ATPase/inner membrane protein (RefSeq), at 3,876,006 to 3,877,862 _3232 Position (kb) 3874 3875 3876Strain fitness (log2 ratio) -2 -1 0 1at 3873.487 kb on - strand, within Shewana3_3230at 3873.531 kb on - strand, within Shewana3_3230at 3873.731 kb on - strand, within Shewana3_3230at 3873.891 kb on - strand, within Shewana3_3230at 3873.952 kb on + strand, within Shewana3_3230at 3874.135 kb on + strandat 3874.231 kb on - strandat 3874.279 kb on + strandat 3874.379 kb on - strandat 3874.429 kb on + strandat 3874.530 kb on - strand, within Shewana3_3231at 3874.592 kb on + strand, within Shewana3_3231at 3874.643 kb on + strand, within Shewana3_3231at 3874.889 kb on + strand, within Shewana3_3231at 3875.067 kb on + strand, within Shewana3_3231at 3875.105 kb on - strand, within Shewana3_3231at 3875.230 kb on + strand, within Shewana3_3231at 3875.238 kb on - strand, within Shewana3_3231at 3875.238 kb on - strand, within Shewana3_3231at 3875.238 kb on - strand, within Shewana3_3231at 3875.261 kb on - strand, within Shewana3_3231at 3875.303 kb on - strand, within Shewana3_3231at 3875.304 kb on - strand, within Shewana3_3231at 3875.718 kb on + strand, within Shewana3_3231at 3876.039 kb on - strandat 3876.049 kb on - strandat 3876.063 kb on + strandat 3876.131 kb on + strandat 3876.283 kb on - strand, within Shewana3_3232at 3876.479 kb on - strand, within Shewana3_3232at 3876.572 kb on + strand, within Shewana3_3232at 3876.674 kb on + strand, within Shewana3_3232at 3876.676 kb on + strand, within Shewana3_3232at 3876.684 kb on - strand, within Shewana3_3232at 3876.686 kb on + strand, within Shewana3_3232at 3876.686 kb on + strand, within Shewana3_3232at 3876.686 kb on + strand, within Shewana3_3232at 3876.754 kb on - strand, within Shewana3_3232

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Isoleucine (N)
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3,873,487 - Shewana3_3230 0.26 +0.9
3,873,531 - Shewana3_3230 0.32 -0.9
3,873,731 - Shewana3_3230 0.58 -2.0
3,873,891 - Shewana3_3230 0.78 +0.6
3,873,952 + Shewana3_3230 0.86 +0.4
3,874,135 + -0.6
3,874,231 - +1.0
3,874,279 + +1.1
3,874,379 - +0.5
3,874,429 + +1.3
3,874,530 - Shewana3_3231 0.14 -2.6
3,874,592 + Shewana3_3231 0.18 +0.4
3,874,643 + Shewana3_3231 0.21 -1.3
3,874,889 + Shewana3_3231 0.37 -1.5
3,875,067 + Shewana3_3231 0.48 -1.5
3,875,105 - Shewana3_3231 0.50 +0.8
3,875,230 + Shewana3_3231 0.58 -1.4
3,875,238 - Shewana3_3231 0.59 -1.6
3,875,238 - Shewana3_3231 0.59 -0.7
3,875,238 - Shewana3_3231 0.59 +0.3
3,875,261 - Shewana3_3231 0.60 -2.3
3,875,303 - Shewana3_3231 0.63 +0.4
3,875,304 - Shewana3_3231 0.63 +0.4
3,875,718 + Shewana3_3231 0.88 +0.5
3,876,039 - +0.4
3,876,049 - -1.1
3,876,063 + +0.6
3,876,131 + -1.6
3,876,283 - Shewana3_3232 0.15 +0.3
3,876,479 - Shewana3_3232 0.25 +0.2
3,876,572 + Shewana3_3232 0.30 -1.8
3,876,674 + Shewana3_3232 0.36 +0.8
3,876,676 + Shewana3_3232 0.36 +0.4
3,876,684 - Shewana3_3232 0.37 +0.3
3,876,686 + Shewana3_3232 0.37 +0.9
3,876,686 + Shewana3_3232 0.37 +0.5
3,876,686 + Shewana3_3232 0.37 -1.6
3,876,754 - Shewana3_3232 0.40 +0.4

Or see this region's nucleotide sequence