Experiment: L-Isoleucine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_3230 and Shewana3_3231 are separated by 236 nucleotides Shewana3_3231 and Shewana3_3232 are separated by 102 nucleotides
Shewana3_3230: Shewana3_3230 - methionine aminopeptidase, type I (RefSeq), at 3,873,280 to 3,874,062
_3230
Shewana3_3231: Shewana3_3231 - AMP-dependent synthetase and ligase (RefSeq), at 3,874,299 to 3,875,903
_3231
Shewana3_3232: Shewana3_3232 - lipid ABC transporter ATPase/inner membrane protein (RefSeq), at 3,876,006 to 3,877,862
_3232
Position (kb)
3874
3875
3876 Strain fitness (log2 ratio)
-2
-1
0
1 at 3873.487 kb on - strand, within Shewana3_3230 at 3873.531 kb on - strand, within Shewana3_3230 at 3873.731 kb on - strand, within Shewana3_3230 at 3873.891 kb on - strand, within Shewana3_3230 at 3873.952 kb on + strand, within Shewana3_3230 at 3874.135 kb on + strand at 3874.231 kb on - strand at 3874.279 kb on + strand at 3874.379 kb on - strand at 3874.429 kb on + strand at 3874.530 kb on - strand, within Shewana3_3231 at 3874.592 kb on + strand, within Shewana3_3231 at 3874.643 kb on + strand, within Shewana3_3231 at 3874.889 kb on + strand, within Shewana3_3231 at 3875.067 kb on + strand, within Shewana3_3231 at 3875.105 kb on - strand, within Shewana3_3231 at 3875.230 kb on + strand, within Shewana3_3231 at 3875.238 kb on - strand, within Shewana3_3231 at 3875.238 kb on - strand, within Shewana3_3231 at 3875.238 kb on - strand, within Shewana3_3231 at 3875.261 kb on - strand, within Shewana3_3231 at 3875.303 kb on - strand, within Shewana3_3231 at 3875.304 kb on - strand, within Shewana3_3231 at 3875.718 kb on + strand, within Shewana3_3231 at 3876.039 kb on - strand at 3876.049 kb on - strand at 3876.063 kb on + strand at 3876.131 kb on + strand at 3876.283 kb on - strand, within Shewana3_3232 at 3876.479 kb on - strand, within Shewana3_3232 at 3876.572 kb on + strand, within Shewana3_3232 at 3876.674 kb on + strand, within Shewana3_3232 at 3876.676 kb on + strand, within Shewana3_3232 at 3876.684 kb on - strand, within Shewana3_3232 at 3876.686 kb on + strand, within Shewana3_3232 at 3876.686 kb on + strand, within Shewana3_3232 at 3876.686 kb on + strand, within Shewana3_3232 at 3876.754 kb on - strand, within Shewana3_3232
Per-strain Table
Position Strand Gene LocusTag Fraction L-Isoleucine (N) remove 3,873,487 - Shewana3_3230 0.26 +0.9 3,873,531 - Shewana3_3230 0.32 -0.9 3,873,731 - Shewana3_3230 0.58 -2.0 3,873,891 - Shewana3_3230 0.78 +0.6 3,873,952 + Shewana3_3230 0.86 +0.4 3,874,135 + -0.6 3,874,231 - +1.0 3,874,279 + +1.1 3,874,379 - +0.5 3,874,429 + +1.3 3,874,530 - Shewana3_3231 0.14 -2.6 3,874,592 + Shewana3_3231 0.18 +0.4 3,874,643 + Shewana3_3231 0.21 -1.3 3,874,889 + Shewana3_3231 0.37 -1.5 3,875,067 + Shewana3_3231 0.48 -1.5 3,875,105 - Shewana3_3231 0.50 +0.8 3,875,230 + Shewana3_3231 0.58 -1.4 3,875,238 - Shewana3_3231 0.59 -1.6 3,875,238 - Shewana3_3231 0.59 -0.7 3,875,238 - Shewana3_3231 0.59 +0.3 3,875,261 - Shewana3_3231 0.60 -2.3 3,875,303 - Shewana3_3231 0.63 +0.4 3,875,304 - Shewana3_3231 0.63 +0.4 3,875,718 + Shewana3_3231 0.88 +0.5 3,876,039 - +0.4 3,876,049 - -1.1 3,876,063 + +0.6 3,876,131 + -1.6 3,876,283 - Shewana3_3232 0.15 +0.3 3,876,479 - Shewana3_3232 0.25 +0.2 3,876,572 + Shewana3_3232 0.30 -1.8 3,876,674 + Shewana3_3232 0.36 +0.8 3,876,676 + Shewana3_3232 0.36 +0.4 3,876,684 - Shewana3_3232 0.37 +0.3 3,876,686 + Shewana3_3232 0.37 +0.9 3,876,686 + Shewana3_3232 0.37 +0.5 3,876,686 + Shewana3_3232 0.37 -1.6 3,876,754 - Shewana3_3232 0.40 +0.4
Or see this region's nucleotide sequence